Wall clock time and date at job start Tue Mar 31 2020 18:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34478 * 125.57164 * 2 1 4 4 C 1.46685 * 106.33276 * 179.86807 * 3 2 1 5 5 C 1.47268 * 126.94418 * 180.11724 * 4 3 2 6 6 O 1.21622 * 119.99996 * 180.33323 * 5 4 3 7 7 N 1.34777 * 119.99799 * 0.33107 * 5 4 3 8 8 C 1.46497 * 119.99920 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47364 * 180.02562 * 8 7 5 10 10 H 1.09008 * 109.46765 * 59.99901 * 9 8 7 11 11 O 1.42900 * 109.47069 * 300.00020 * 9 8 7 12 12 C 1.52999 * 109.47455 * 179.97438 * 9 8 7 13 13 N 1.46497 * 109.47371 * 184.99801 * 12 9 8 14 14 C 1.36936 * 119.99900 * 180.02562 * 13 12 9 15 15 H 1.07990 * 120.00311 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99600 * 180.02562 * 14 13 12 17 17 N 1.31618 * 119.99959 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00295 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47349 * 89.99856 * 18 16 14 20 20 H 1.48501 * 109.47196 * 210.00067 * 18 16 14 21 21 H 1.48502 * 109.47277 * 329.99738 * 18 16 14 22 22 C 1.36770 * 106.11727 * 0.39597 * 4 3 2 23 23 C 1.50694 * 125.80485 * 179.79616 * 22 4 3 24 24 N 1.34659 * 108.39128 * 359.76227 * 22 4 3 25 25 C 1.46506 * 124.84664 * 180.02562 * 24 22 4 26 26 C 1.52995 * 109.46944 * 270.01855 * 25 24 22 27 27 C 1.53001 * 117.49823 * 243.61929 * 26 25 24 28 28 C 1.52997 * 60.00407 * 252.51493 * 27 26 25 29 29 H 1.09001 * 109.46953 * 269.68908 * 1 2 3 30 30 H 1.09000 * 109.47318 * 29.68506 * 1 2 3 31 31 H 1.09000 * 109.47161 * 149.69136 * 1 2 3 32 32 H 1.08005 * 126.83402 * 0.02562 * 3 2 1 33 33 H 0.97002 * 120.00258 * 0.02562 * 7 5 4 34 34 H 1.09003 * 109.47507 * 300.00379 * 8 7 5 35 35 H 1.09000 * 109.47413 * 60.00171 * 8 7 5 36 36 H 0.96696 * 114.00258 * 299.99723 * 11 9 8 37 37 H 1.09004 * 109.47186 * 305.00304 * 12 9 8 38 38 H 1.09008 * 109.46850 * 65.00201 * 12 9 8 39 39 H 0.96999 * 119.99656 * 0.02562 * 13 12 9 40 40 H 0.97004 * 120.00661 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.47191 * 269.95462 * 23 22 4 42 42 H 1.08998 * 109.47497 * 29.95781 * 23 22 4 43 43 H 1.09004 * 109.47368 * 149.95765 * 23 22 4 44 44 H 1.08997 * 109.47268 * 30.02469 * 25 24 22 45 45 H 1.09007 * 109.46612 * 150.02253 * 25 24 22 46 46 H 1.08999 * 115.55120 * 29.33329 * 26 25 24 47 47 H 1.09002 * 117.50206 * 0.02562 * 27 26 25 48 48 H 1.09010 * 117.49210 * 145.02390 * 27 26 25 49 49 H 1.08996 * 117.49874 * 252.51475 * 28 27 26 50 50 H 1.08997 * 117.49766 * 107.48961 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2893 1.0938 0.0000 4 6 3.6743 0.6105 0.0032 5 6 4.8978 1.4301 0.0068 6 8 5.9892 0.8935 0.0032 7 7 4.8080 2.7749 0.0142 8 6 6.0251 3.5902 0.0183 9 6 5.6461 5.0724 0.0271 10 1 5.0586 5.2919 0.9187 11 8 4.8749 5.3738 -1.1376 12 6 6.9172 5.9240 0.0321 13 7 6.5571 7.3382 0.1608 14 6 7.5369 8.2944 0.1876 15 1 8.5750 8.0062 0.1135 16 6 7.1957 9.6344 0.3101 17 7 8.1374 10.5536 0.3354 18 14 5.4001 10.1330 0.4390 19 1 4.9939 10.1554 1.8671 20 1 5.2183 11.4847 -0.1487 21 1 4.5607 9.1554 -0.2992 22 6 3.5998 -0.7552 -0.0041 23 6 4.7722 -1.7020 -0.0085 24 7 2.3008 -1.1098 -0.0061 25 6 1.8099 -2.4902 -0.0130 26 6 1.6397 -2.9636 -1.4579 27 6 0.2249 -3.3115 -1.9252 28 6 1.2451 -4.4251 -1.6805 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3634 0.8928 -0.5089 31 1 -0.3633 -0.8872 -0.5186 32 1 1.9629 2.1234 0.0004 33 1 3.9375 3.2029 0.0174 34 1 6.6133 3.3607 0.9069 35 1 6.6128 3.3704 -0.8730 36 1 5.3361 5.2022 -1.9700 37 1 7.5472 5.6315 0.8721 38 1 7.4607 5.7709 -0.9004 39 1 5.6247 7.5971 0.2269 40 1 7.8990 11.4900 0.4207 41 1 5.0549 -1.9254 -1.0372 42 1 5.6140 -1.2404 0.5076 43 1 4.4956 -2.6251 0.5008 44 1 2.5264 -3.1332 0.4981 45 1 0.8493 -2.5367 0.5002 46 1 2.3122 -2.5076 -2.1844 47 1 -0.5846 -3.2027 -1.2035 48 1 -0.0335 -3.0841 -2.9596 49 1 1.6579 -4.9303 -2.5537 50 1 1.1069 -5.0492 -0.7977 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320296224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:55 Heat of formation + Delta-G solvation = -10.719148 kcal Electronic energy + Delta-G solvation = -28327.110666 eV Core-core repulsion = 24356.025209 eV Total energy + Delta-G solvation = -3971.085457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.80555 -39.30820 -37.98890 -37.53331 -34.40103 -34.03231 -32.98169 -32.69157 -31.43011 -29.63458 -29.29253 -27.35559 -25.69217 -24.72913 -23.04827 -22.56326 -21.74850 -21.48233 -21.34442 -20.05750 -19.07020 -17.69498 -17.21621 -16.63775 -16.19167 -15.94108 -15.84998 -15.54464 -15.14092 -14.68097 -14.51441 -14.22912 -14.15850 -13.71921 -13.58754 -13.48408 -13.34989 -13.09493 -13.04751 -12.75760 -12.73265 -12.55441 -12.49912 -12.32981 -12.15413 -11.94108 -11.82060 -11.62647 -11.25918 -11.07567 -10.83663 -10.72183 -10.70055 -10.12907 -9.92075 -9.64384 -9.49068 -9.03730 -8.89276 -8.76023 -8.17916 -7.21853 -5.74449 -3.10291 1.61769 2.14679 2.38887 3.10273 3.39475 3.42393 3.48501 3.49610 3.57992 3.97214 4.13570 4.22933 4.41025 4.50204 4.55980 4.62522 4.63810 4.66148 4.80950 4.83805 4.88029 4.99505 5.04188 5.14155 5.18592 5.24441 5.24691 5.36010 5.42304 5.45356 5.48764 5.55351 5.55413 5.55866 5.66550 5.77020 5.82101 5.87140 5.96004 6.08359 6.47895 6.54589 6.61127 6.62814 6.86860 6.99772 7.69368 7.86334 8.02078 8.41981 8.44269 9.23884 9.95948 10.15921 11.43633 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024346 B = 0.001921 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.811280 B =14569.544430 C =15357.932880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.013 3.987 3 C -0.164 4.164 4 C -0.232 4.232 5 C 0.590 3.410 6 O -0.556 6.556 7 N -0.718 5.718 8 C 0.093 3.907 9 C 0.085 3.915 10 H 0.104 0.896 11 O -0.556 6.556 12 C 0.131 3.869 13 N -0.750 5.750 14 C -0.247 4.247 15 H 0.090 0.910 16 C 0.005 3.995 17 N -0.934 5.934 18 Si 0.884 3.116 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.272 1.272 22 C 0.106 3.894 23 C -0.092 4.092 24 N -0.435 5.435 25 C 0.131 3.869 26 C -0.176 4.176 27 C -0.175 4.175 28 C -0.169 4.169 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.145 0.855 33 H 0.404 0.596 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.375 0.625 37 H 0.038 0.962 38 H 0.032 0.968 39 H 0.365 0.635 40 H 0.259 0.741 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.112 0.888 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.099 0.901 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.065 -33.329 -2.278 38.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C -0.188 4.188 4 C -0.242 4.242 5 C 0.379 3.621 6 O -0.436 6.436 7 N -0.369 5.369 8 C -0.032 4.032 9 C 0.025 3.975 10 H 0.121 0.879 11 O -0.362 6.362 12 C 0.003 3.997 13 N -0.396 5.396 14 C -0.377 4.377 15 H 0.107 0.893 16 C -0.191 4.191 17 N -0.582 5.582 18 Si 0.714 3.286 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.198 1.198 22 C -0.010 4.010 23 C -0.149 4.149 24 N -0.112 5.112 25 C 0.009 3.991 26 C -0.195 4.195 27 C -0.212 4.212 28 C -0.207 4.207 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.163 0.837 33 H 0.239 0.761 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.223 0.777 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.199 0.801 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.079 0.921 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.130 0.870 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.118 0.882 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.637 -33.718 -1.829 38.570 hybrid contribution -1.205 0.628 -0.338 1.401 sum -19.843 -33.090 -2.167 38.644 Atomic orbital electron populations 1.20341 0.88015 1.03373 1.02498 1.20153 0.93461 0.85415 1.10355 1.21806 0.90901 0.97669 1.08442 1.20075 0.92899 0.92125 1.19080 1.17340 0.87693 0.81604 0.75472 1.90723 1.28706 1.72500 1.51706 1.45659 1.10030 1.05681 1.75551 1.22010 0.87269 0.90656 1.03234 1.22448 0.94457 0.91055 0.89517 0.87861 1.86541 1.44225 1.89494 1.15913 1.21185 0.93601 0.85347 0.99585 1.42576 1.05644 1.01061 1.90282 1.19055 0.89475 0.86304 1.42824 0.89256 1.24668 0.97008 0.95566 1.01832 1.69707 1.31067 1.00272 1.57119 0.86536 0.86378 0.77784 0.77901 1.21124 1.21777 1.19834 1.20251 0.84584 0.94013 1.02153 1.20555 0.94725 0.96348 1.03308 1.43513 1.05001 1.05840 1.56865 1.21433 1.01380 0.80573 0.95723 1.22671 1.00069 0.99382 0.97338 1.23089 0.92118 1.03082 1.02879 1.22979 1.03282 0.90652 1.03785 0.91199 0.90009 0.91737 0.83736 0.76135 0.90428 0.91052 0.77727 0.94439 0.95051 0.80126 0.93062 0.90611 0.88036 0.92139 0.88655 0.88982 0.87009 0.88496 0.88429 0.88241 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 9.81 36.01 0.35 -0.13 16 2 C 0.01 0.12 6.85 -81.87 -0.56 -0.44 16 3 C -0.16 -1.72 10.45 -37.50 -0.39 -2.11 16 4 C -0.23 -2.89 6.29 -103.35 -0.65 -3.54 16 5 C 0.59 8.48 7.81 -12.59 -0.10 8.39 16 6 O -0.56 -9.43 14.81 5.26 0.08 -9.35 16 7 N -0.72 -9.28 5.44 -61.44 -0.33 -9.62 16 8 C 0.09 1.26 5.34 -4.04 -0.02 1.24 16 9 C 0.09 1.27 3.08 -26.73 -0.08 1.19 16 10 H 0.10 1.57 8.14 -51.92 -0.42 1.14 16 11 O -0.56 -8.44 13.03 -35.23 -0.46 -8.90 16 12 C 0.13 2.48 5.90 -4.04 -0.02 2.46 16 13 N -0.75 -18.08 5.35 -59.91 -0.32 -18.40 16 14 C -0.25 -7.12 10.47 -15.06 -0.16 -7.28 16 15 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 16 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 17 N -0.93 -29.76 13.97 55.49 0.78 -28.98 16 18 Si 0.88 22.60 27.74 -169.99 -4.71 17.88 16 19 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 20 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 21 H -0.27 -6.67 6.52 56.52 0.37 -6.30 16 22 C 0.11 1.14 6.89 -81.89 -0.56 0.58 16 23 C -0.09 -0.85 9.52 36.00 0.34 -0.51 16 24 N -0.44 -3.69 2.69 -107.96 -0.29 -3.98 16 25 C 0.13 0.69 5.65 -4.04 -0.02 0.67 16 26 C -0.18 -0.88 6.01 -90.62 -0.54 -1.43 16 27 C -0.17 -0.69 10.02 -26.73 -0.27 -0.96 16 28 C -0.17 -0.61 10.25 -26.73 -0.27 -0.88 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.29 7.44 -51.93 -0.39 -0.09 16 32 H 0.14 1.31 7.70 -52.48 -0.40 0.91 16 33 H 0.40 4.70 7.47 -40.82 -0.30 4.39 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.38 4.74 9.05 45.56 0.41 5.15 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.37 8.78 5.53 -40.82 -0.23 8.55 16 40 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.10 1.15 6.47 -51.93 -0.34 0.82 16 43 H 0.06 0.40 6.92 -51.93 -0.36 0.04 16 44 H 0.10 0.42 6.88 -51.93 -0.36 0.06 16 45 H 0.09 0.36 7.25 -51.93 -0.38 -0.01 16 46 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.10 0.30 8.03 -51.93 -0.42 -0.12 16 48 H 0.10 0.39 8.14 -51.92 -0.42 -0.03 16 49 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 410.40 15.07 6.18 6.18 Total: -1.00 -35.95 410.40 -9.56 -45.52 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -7.42 Total: 12.36 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -3.06 Total: -2.70 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -0.17 Total: -60.99 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.38 Total: -18.25 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.71 Total: 17.88 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.95 -9.56 -45.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320296224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.796 kcal (2) G-P(sol) polarization free energy of solvation -35.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds