Wall clock time and date at job start Tue Mar 31 2020 18:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34478 * 125.57164 * 2 1 4 4 C 1.46685 * 106.33276 * 179.86807 * 3 2 1 5 5 C 1.47268 * 126.94418 * 180.11724 * 4 3 2 6 6 O 1.21622 * 119.99996 * 180.33323 * 5 4 3 7 7 N 1.34777 * 119.99799 * 0.33107 * 5 4 3 8 8 C 1.46497 * 119.99920 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47364 * 180.02562 * 8 7 5 10 10 H 1.09008 * 109.46765 * 59.99901 * 9 8 7 11 11 O 1.42900 * 109.47069 * 300.00020 * 9 8 7 12 12 C 1.52999 * 109.47455 * 179.97438 * 9 8 7 13 13 N 1.46497 * 109.47371 * 184.99801 * 12 9 8 14 14 C 1.36936 * 119.99900 * 180.02562 * 13 12 9 15 15 H 1.07990 * 120.00311 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99600 * 180.02562 * 14 13 12 17 17 N 1.31618 * 119.99959 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00295 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47349 * 89.99856 * 18 16 14 20 20 H 1.48501 * 109.47196 * 210.00067 * 18 16 14 21 21 H 1.48502 * 109.47277 * 329.99738 * 18 16 14 22 22 C 1.36770 * 106.11727 * 0.39597 * 4 3 2 23 23 C 1.50694 * 125.80485 * 179.79616 * 22 4 3 24 24 N 1.34659 * 108.39128 * 359.76227 * 22 4 3 25 25 C 1.46506 * 124.84664 * 180.02562 * 24 22 4 26 26 C 1.52995 * 109.46944 * 270.01855 * 25 24 22 27 27 C 1.53001 * 117.49823 * 243.61929 * 26 25 24 28 28 C 1.52997 * 60.00407 * 252.51493 * 27 26 25 29 29 H 1.09001 * 109.46953 * 269.68908 * 1 2 3 30 30 H 1.09000 * 109.47318 * 29.68506 * 1 2 3 31 31 H 1.09000 * 109.47161 * 149.69136 * 1 2 3 32 32 H 1.08005 * 126.83402 * 0.02562 * 3 2 1 33 33 H 0.97002 * 120.00258 * 0.02562 * 7 5 4 34 34 H 1.09003 * 109.47507 * 300.00379 * 8 7 5 35 35 H 1.09000 * 109.47413 * 60.00171 * 8 7 5 36 36 H 0.96696 * 114.00258 * 299.99723 * 11 9 8 37 37 H 1.09004 * 109.47186 * 305.00304 * 12 9 8 38 38 H 1.09008 * 109.46850 * 65.00201 * 12 9 8 39 39 H 0.96999 * 119.99656 * 0.02562 * 13 12 9 40 40 H 0.97004 * 120.00661 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.47191 * 269.95462 * 23 22 4 42 42 H 1.08998 * 109.47497 * 29.95781 * 23 22 4 43 43 H 1.09004 * 109.47368 * 149.95765 * 23 22 4 44 44 H 1.08997 * 109.47268 * 30.02469 * 25 24 22 45 45 H 1.09007 * 109.46612 * 150.02253 * 25 24 22 46 46 H 1.08999 * 115.55120 * 29.33329 * 26 25 24 47 47 H 1.09002 * 117.50206 * 0.02562 * 27 26 25 48 48 H 1.09010 * 117.49210 * 145.02390 * 27 26 25 49 49 H 1.08996 * 117.49874 * 252.51475 * 28 27 26 50 50 H 1.08997 * 117.49766 * 107.48961 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2893 1.0938 0.0000 4 6 3.6743 0.6105 0.0032 5 6 4.8978 1.4301 0.0068 6 8 5.9892 0.8935 0.0032 7 7 4.8080 2.7749 0.0142 8 6 6.0251 3.5902 0.0183 9 6 5.6461 5.0724 0.0271 10 1 5.0586 5.2919 0.9187 11 8 4.8749 5.3738 -1.1376 12 6 6.9172 5.9240 0.0321 13 7 6.5571 7.3382 0.1608 14 6 7.5369 8.2944 0.1876 15 1 8.5750 8.0062 0.1135 16 6 7.1957 9.6344 0.3101 17 7 8.1374 10.5536 0.3354 18 14 5.4001 10.1330 0.4390 19 1 4.9939 10.1554 1.8671 20 1 5.2183 11.4847 -0.1487 21 1 4.5607 9.1554 -0.2992 22 6 3.5998 -0.7552 -0.0041 23 6 4.7722 -1.7020 -0.0085 24 7 2.3008 -1.1098 -0.0061 25 6 1.8099 -2.4902 -0.0130 26 6 1.6397 -2.9636 -1.4579 27 6 0.2249 -3.3115 -1.9252 28 6 1.2451 -4.4251 -1.6805 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3634 0.8928 -0.5089 31 1 -0.3633 -0.8872 -0.5186 32 1 1.9629 2.1234 0.0004 33 1 3.9375 3.2029 0.0174 34 1 6.6133 3.3607 0.9069 35 1 6.6128 3.3704 -0.8730 36 1 5.3361 5.2022 -1.9700 37 1 7.5472 5.6315 0.8721 38 1 7.4607 5.7709 -0.9004 39 1 5.6247 7.5971 0.2269 40 1 7.8990 11.4900 0.4207 41 1 5.0549 -1.9254 -1.0372 42 1 5.6140 -1.2404 0.5076 43 1 4.4956 -2.6251 0.5008 44 1 2.5264 -3.1332 0.4981 45 1 0.8493 -2.5367 0.5002 46 1 2.3122 -2.5076 -2.1844 47 1 -0.5846 -3.2027 -1.2035 48 1 -0.0335 -3.0841 -2.9596 49 1 1.6579 -4.9303 -2.5537 50 1 1.1069 -5.0492 -0.7977 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320296224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:54 Heat of formation + Delta-G solvation = -36.561971 kcal Electronic energy + Delta-G solvation = -28328.231295 eV Core-core repulsion = 24356.025209 eV Total energy + Delta-G solvation = -3972.206086 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.50528 -40.39647 -38.91184 -38.27878 -36.19665 -35.24839 -33.64544 -33.50413 -33.32330 -30.96711 -29.98860 -28.22835 -26.90017 -25.67042 -24.11193 -23.30724 -22.89020 -22.70441 -21.89880 -20.95400 -19.94605 -19.67527 -18.04583 -17.72986 -17.19524 -16.81708 -16.65227 -16.50905 -16.25768 -16.03874 -15.63356 -15.39739 -15.09877 -14.88806 -14.75183 -14.33070 -14.24770 -14.13418 -14.01720 -13.89316 -13.58597 -13.41565 -13.34711 -13.20801 -13.16478 -13.02129 -12.80383 -12.44404 -12.36800 -12.25830 -12.23429 -11.87936 -11.82505 -11.40202 -11.15345 -11.01123 -11.00840 -10.78654 -10.11597 -9.53009 -9.31767 -8.92402 -8.03494 -5.37340 0.74104 1.40234 1.42608 1.42782 1.51162 1.76131 2.35761 2.48951 2.57974 2.80096 3.26555 3.40026 3.54056 3.59157 3.78600 3.79909 3.87739 3.98538 3.99696 4.03604 4.10103 4.17057 4.21269 4.28020 4.41882 4.47315 4.57786 4.61734 4.68356 4.72790 4.75953 4.77037 4.81606 4.92216 4.92894 4.98988 5.03883 5.12353 5.18347 5.19428 5.22372 5.32282 5.48588 5.73567 5.84599 6.14417 6.19814 6.35930 6.66929 6.76685 7.07182 7.35940 7.82388 8.02174 9.17705 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024346 B = 0.001921 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.811280 B =14569.544430 C =15357.932880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.019 3.981 3 C -0.184 4.184 4 C -0.265 4.265 5 C 0.585 3.415 6 O -0.591 6.591 7 N -0.710 5.710 8 C 0.103 3.897 9 C 0.107 3.893 10 H 0.108 0.892 11 O -0.563 6.563 12 C 0.125 3.875 13 N -0.752 5.752 14 C -0.239 4.239 15 H 0.057 0.943 16 C -0.063 4.063 17 N -0.983 5.983 18 Si 0.957 3.043 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.252 1.252 22 C 0.099 3.901 23 C -0.087 4.087 24 N -0.429 5.429 25 C 0.126 3.874 26 C -0.186 4.186 27 C -0.173 4.173 28 C -0.161 4.161 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.153 0.847 33 H 0.411 0.589 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.387 0.613 37 H 0.039 0.961 38 H 0.035 0.965 39 H 0.369 0.631 40 H 0.258 0.742 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.113 0.887 46 H 0.089 0.911 47 H 0.111 0.889 48 H 0.093 0.907 49 H 0.099 0.901 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.642 -35.515 -2.118 42.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.208 4.208 4 C -0.275 4.275 5 C 0.376 3.624 6 O -0.474 6.474 7 N -0.361 5.361 8 C -0.022 4.022 9 C 0.047 3.953 10 H 0.126 0.874 11 O -0.369 6.369 12 C -0.002 4.002 13 N -0.398 5.398 14 C -0.370 4.370 15 H 0.075 0.925 16 C -0.255 4.255 17 N -0.633 5.633 18 Si 0.784 3.216 19 H -0.203 1.203 20 H -0.222 1.222 21 H -0.177 1.177 22 C -0.019 4.019 23 C -0.145 4.145 24 N -0.105 5.105 25 C 0.006 3.994 26 C -0.205 4.205 27 C -0.209 4.209 28 C -0.198 4.198 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.171 0.829 33 H 0.248 0.752 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.236 0.764 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.202 0.798 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.124 0.876 45 H 0.131 0.869 46 H 0.107 0.893 47 H 0.129 0.871 48 H 0.112 0.888 49 H 0.117 0.883 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.255 -35.960 -1.684 42.323 hybrid contribution -0.036 1.181 -0.429 1.257 sum -22.291 -34.779 -2.113 41.363 Atomic orbital electron populations 1.20444 0.85502 1.04429 1.03617 1.20670 0.94943 0.85000 1.08334 1.21982 0.90227 0.98801 1.09759 1.20119 0.92970 0.92952 1.21493 1.17713 0.88025 0.81914 0.74798 1.90696 1.30075 1.73100 1.53521 1.45546 1.10076 1.05350 1.75146 1.21801 0.87530 0.89761 1.03068 1.22131 0.92409 0.90873 0.89884 0.87398 1.86519 1.44400 1.89541 1.16485 1.21390 0.95862 0.83366 0.99588 1.42545 1.04776 1.02290 1.90196 1.19051 0.89196 0.87499 1.41246 0.92527 1.25522 1.01946 0.95583 1.02409 1.69887 1.33668 1.00591 1.59150 0.85368 0.80594 0.77328 0.78279 1.20306 1.22182 1.17668 1.20441 0.85920 0.93825 1.01714 1.20493 0.93580 0.97022 1.03358 1.43730 1.04155 1.07173 1.55416 1.21716 1.02597 0.78854 0.96226 1.22514 1.00646 1.00649 0.96654 1.23175 0.91902 1.02805 1.03053 1.23061 1.02399 0.90026 1.04333 0.89924 0.89403 0.90264 0.82924 0.75236 0.90818 0.91151 0.76377 0.94328 0.94735 0.79765 0.93278 0.90528 0.90459 0.89435 0.87603 0.86929 0.89259 0.87079 0.88830 0.88301 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 9.81 71.24 0.70 0.02 16 2 C 0.02 0.29 6.85 40.98 0.28 0.57 16 3 C -0.18 -3.67 10.45 23.62 0.25 -3.43 16 4 C -0.27 -6.58 6.29 -19.04 -0.12 -6.70 16 5 C 0.58 17.02 7.81 86.62 0.68 17.70 16 6 O -0.59 -20.64 14.81 -4.10 -0.06 -20.70 16 7 N -0.71 -18.02 5.44 -466.53 -2.54 -20.55 16 8 C 0.10 2.73 5.34 86.38 0.46 3.19 16 9 C 0.11 3.05 3.08 30.59 0.09 3.14 16 10 H 0.11 3.05 8.14 -2.38 -0.02 3.03 16 11 O -0.56 -15.91 13.03 -148.98 -1.94 -17.85 16 12 C 0.13 4.64 5.90 86.38 0.51 5.15 16 13 N -0.75 -35.60 5.35 -343.45 -1.84 -37.44 16 14 C -0.24 -13.94 10.47 84.03 0.88 -13.06 16 15 H 0.06 3.60 8.06 -2.92 -0.02 3.58 16 16 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 17 N -0.98 -63.95 13.97 21.65 0.30 -63.65 16 18 Si 0.96 46.50 27.74 68.60 1.90 48.41 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 21 H -0.25 -11.27 6.52 99.48 0.65 -10.62 16 22 C 0.10 2.07 6.89 41.78 0.29 2.36 16 23 C -0.09 -1.60 9.52 71.23 0.68 -0.92 16 24 N -0.43 -6.53 2.69 -495.48 -1.33 -7.86 16 25 C 0.13 1.00 5.65 86.38 0.49 1.49 16 26 C -0.19 -1.50 6.01 -10.79 -0.06 -1.56 16 27 C -0.17 -0.91 10.02 30.59 0.31 -0.61 16 28 C -0.16 -0.76 10.25 30.60 0.31 -0.44 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.43 7.44 -2.39 -0.02 0.42 16 32 H 0.15 2.59 7.70 -2.91 -0.02 2.57 16 33 H 0.41 9.15 7.47 -92.71 -0.69 8.46 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.39 9.04 9.05 -74.06 -0.67 8.37 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.37 16.93 5.53 -92.71 -0.51 16.41 16 40 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 41 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.08 1.82 6.47 -2.39 -0.02 1.81 16 43 H 0.09 1.05 6.92 -2.39 -0.02 1.03 16 44 H 0.11 0.62 6.88 -2.39 -0.02 0.60 16 45 H 0.11 0.46 7.25 -2.38 -0.02 0.44 16 46 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.11 0.28 8.03 -2.39 -0.02 0.26 16 48 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 49 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 Total: -1.00 -78.89 410.40 -0.27 -79.16 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: -0.97 Total: 36.90 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 6.20 Total: 3.59 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -5.41 Total: -129.50 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -2.00 Total: -38.55 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.90 Total: 48.41 kcal Total: -78.89 -0.27 -79.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320296224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.593 kcal (2) G-P(sol) polarization free energy of solvation -78.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds