Wall clock time and date at job start Tue Mar 31 2020 19:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34508 * 125.78698 * 2 1 4 4 C 1.41384 * 106.84247 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.58413 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47135 * 145.01956 * 5 4 3 7 7 C 1.52999 * 109.47103 * 265.02188 * 5 4 3 8 8 N 1.46499 * 109.47180 * 25.01771 * 5 4 3 9 9 C 1.34775 * 120.00466 * 155.00413 * 8 5 4 10 10 O 1.21594 * 119.99486 * 359.97438 * 9 8 5 11 11 N 1.34768 * 120.00410 * 180.02562 * 9 8 5 12 12 C 1.46501 * 120.00049 * 180.02562 * 11 9 8 13 13 C 1.53046 * 109.45737 * 275.02011 * 12 11 9 14 14 C 1.53188 * 109.31407 * 178.60329 * 13 12 11 15 15 N 1.46923 * 108.76490 * 54.65175 * 14 13 12 16 16 C 1.36941 * 120.62941 * 126.36545 * 15 14 13 17 17 H 1.08004 * 119.99900 * 331.86594 * 16 15 14 18 18 C 1.38809 * 120.00237 * 151.85630 * 16 15 14 19 19 N 1.31618 * 120.00375 * 343.07418 * 18 16 15 20 20 Si 1.86803 * 119.99907 * 163.06626 * 18 16 15 21 21 H 1.48503 * 109.47181 * 90.00512 * 20 18 16 22 22 H 1.48499 * 109.47205 * 210.00389 * 20 18 16 23 23 H 1.48507 * 109.47045 * 330.00581 * 20 18 16 24 24 C 1.46921 * 118.74295 * 306.38347 * 15 14 13 25 25 C 1.53048 * 109.46179 * 154.96869 * 12 11 9 26 26 C 1.34518 * 106.83572 * 0.21977 * 4 3 2 27 27 C 1.50696 * 125.78636 * 179.77312 * 26 4 3 28 28 O 1.34296 * 125.78798 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47321 * 90.00291 * 1 2 3 30 30 H 1.09006 * 109.47048 * 210.00402 * 1 2 3 31 31 H 1.08997 * 109.47319 * 329.99749 * 1 2 3 32 32 H 1.08007 * 126.58439 * 0.05321 * 3 2 1 33 33 H 1.08991 * 109.47452 * 179.97438 * 7 5 4 34 34 H 1.09009 * 109.46698 * 300.00045 * 7 5 4 35 35 H 1.09008 * 109.47054 * 59.99458 * 7 5 4 36 36 H 0.97009 * 120.00083 * 335.00286 * 8 5 4 37 37 H 0.97004 * 120.00402 * 359.97438 * 11 9 8 38 38 H 1.08995 * 109.46327 * 34.99432 * 12 11 9 39 39 H 1.09006 * 109.49503 * 298.56586 * 13 12 11 40 40 H 1.09003 * 109.49359 * 58.65975 * 13 12 11 41 41 H 1.09004 * 109.59412 * 294.86840 * 14 13 12 42 42 H 1.08997 * 109.70310 * 174.50876 * 14 13 12 43 43 H 0.97001 * 120.00447 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.59223 * 293.82220 * 24 15 14 45 45 H 1.08999 * 109.70446 * 173.46399 * 24 15 14 46 46 H 1.08994 * 109.49111 * 301.33396 * 25 12 11 47 47 H 1.08997 * 109.49591 * 61.39712 * 25 12 11 48 48 H 1.09005 * 109.47234 * 90.00356 * 27 26 4 49 49 H 1.09001 * 109.47431 * 210.00303 * 27 26 4 50 50 H 1.09002 * 109.47629 * 330.00275 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 4.8732 1.4851 -0.0014 6 1 5.6496 0.9966 0.5875 7 6 5.3638 1.6703 -1.4387 8 7 4.5677 2.7934 0.5827 9 6 5.5484 3.5245 1.1486 10 8 6.6867 3.0978 1.1747 11 7 5.2672 4.7278 1.6863 12 6 6.3334 5.5226 2.3009 13 6 6.5255 5.0813 3.7537 14 6 7.6643 5.8902 4.3826 15 7 7.3732 7.3211 4.2204 16 6 7.3715 8.1599 5.3028 17 1 7.1307 7.7759 6.2831 18 6 7.6793 9.5036 5.1402 19 7 8.2872 9.9119 4.0466 20 14 7.2305 10.7326 6.4736 21 1 8.3532 10.8480 7.4387 22 1 6.9693 12.0582 5.8573 23 1 6.0121 10.2686 7.1847 24 6 7.0838 7.8351 2.8747 25 6 5.9516 7.0042 2.2626 26 6 3.5813 -0.7121 -0.0059 27 6 4.7705 -1.6377 -0.0133 28 8 2.2924 -1.0894 -0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.9665 2.1205 0.0008 33 1 6.2620 2.2875 -1.4394 34 1 5.5911 0.6968 -1.8733 35 1 4.5872 2.1587 -2.0276 36 1 3.6595 3.1336 0.5621 37 1 4.3591 5.0680 1.6658 38 1 7.2619 5.3726 1.7500 39 1 5.6049 5.2545 4.3112 40 1 6.7743 4.0204 3.7817 41 1 8.6028 5.6493 3.8834 42 1 7.7427 5.6511 5.4432 43 1 8.5020 10.8510 3.9328 44 1 7.9750 7.7528 2.2526 45 1 6.7776 8.8792 2.9381 46 1 5.7920 7.3121 1.2293 47 1 5.0363 7.1589 2.8338 48 1 5.0604 -1.8651 1.0126 49 1 4.5091 -2.5611 -0.5301 50 1 5.6024 -1.1565 -0.5277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322567216.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:45 Heat of formation + Delta-G solvation = -6.203969 kcal Electronic energy + Delta-G solvation = -29082.203584 eV Core-core repulsion = 25111.313920 eV Total energy + Delta-G solvation = -3970.889664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.97651 -39.96949 -37.64805 -36.13293 -34.28622 -33.35680 -33.03572 -31.98931 -30.39390 -29.87478 -29.77558 -28.93189 -25.29560 -24.94160 -23.58074 -22.31533 -22.07512 -21.40056 -20.28145 -19.85731 -19.29637 -17.87552 -17.06247 -16.64714 -16.57946 -15.90696 -15.21778 -14.89231 -14.68643 -14.48186 -14.12968 -13.82369 -13.72479 -13.67244 -13.55819 -13.49305 -13.11441 -13.02412 -13.00965 -12.89235 -12.73259 -12.48060 -12.31691 -12.13568 -11.91050 -11.41860 -11.27810 -11.08980 -10.81926 -10.68734 -10.46741 -10.23682 -10.01027 -9.96817 -9.94102 -9.71372 -9.50115 -9.15301 -8.57777 -8.45723 -8.39610 -6.65371 -5.77475 -3.19293 1.38490 2.21773 2.57506 2.87004 3.38441 3.43220 3.45351 3.47701 4.26448 4.38794 4.43345 4.51346 4.60323 4.84793 4.96670 5.04387 5.10035 5.13640 5.20435 5.25491 5.36957 5.38847 5.39901 5.45280 5.54382 5.55398 5.66120 5.67034 5.83383 5.91007 5.95164 6.05266 6.12879 6.23007 6.33616 6.40879 6.51729 6.55221 6.62806 6.65934 6.84719 6.87893 6.96650 7.03422 7.17642 7.35210 7.64852 7.81331 8.20927 8.46993 8.81805 9.23134 9.86561 10.43855 11.31508 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023115 B = 0.002084 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.059098 B =13432.270247 C =13862.559822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.015 4.015 3 C -0.201 4.201 4 C -0.181 4.181 5 C 0.235 3.765 6 H 0.094 0.906 7 C -0.158 4.158 8 N -0.744 5.744 9 C 0.703 3.297 10 O -0.591 6.591 11 N -0.739 5.739 12 C 0.169 3.831 13 C -0.139 4.139 14 C 0.148 3.852 15 N -0.593 5.593 16 C -0.251 4.251 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.175 3.825 25 C -0.146 4.146 26 C -0.004 4.004 27 C -0.077 4.077 28 O -0.173 6.173 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.146 0.854 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.392 0.608 37 H 0.390 0.610 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.254 0.746 44 H 0.021 0.979 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.083 0.917 49 H 0.077 0.923 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.980 -20.615 -11.988 28.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.220 4.220 4 C -0.183 4.183 5 C 0.129 3.871 6 H 0.112 0.888 7 C -0.216 4.216 8 N -0.400 5.400 9 C 0.403 3.597 10 O -0.469 6.469 11 N -0.392 5.392 12 C 0.066 3.934 13 C -0.179 4.179 14 C 0.021 3.979 15 N -0.316 5.316 16 C -0.380 4.380 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.048 3.952 25 C -0.186 4.186 26 C -0.054 4.054 27 C -0.134 4.134 28 O -0.070 6.070 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.163 0.837 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.226 0.774 37 H 0.223 0.777 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.102 0.898 49 H 0.095 0.905 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.932 -21.115 -11.982 27.991 hybrid contribution -1.166 1.230 0.597 1.797 sum -15.098 -19.885 -11.384 27.440 Atomic orbital electron populations 1.20299 0.85058 1.04099 1.03471 1.22336 0.93933 0.84017 1.06228 1.21275 0.91910 0.99355 1.09445 1.20235 0.95359 0.93319 1.09338 1.18879 0.92443 0.81310 0.94443 0.88763 1.22180 1.01868 1.02186 0.95415 1.45157 1.10858 1.20005 1.63992 1.15987 0.84669 0.80941 0.78069 1.90911 1.19748 1.71615 1.64621 1.45540 1.12687 1.18481 1.62543 1.20901 0.89521 0.89820 0.93206 1.22389 1.00808 0.99261 0.95487 1.20877 0.93708 0.85225 0.98123 1.44092 1.80481 1.02682 1.04319 1.19177 1.40288 0.89942 0.88626 0.91710 1.25051 0.98610 0.98556 0.97519 1.70025 1.42005 1.15119 1.27651 0.86312 0.78389 0.80851 0.81308 1.21398 1.21587 1.20539 1.20732 0.92252 0.97606 0.84588 1.22542 1.02192 0.93774 1.00090 1.22089 0.83328 0.93837 1.06162 1.20378 0.91352 0.97742 1.03883 1.83961 1.16192 1.34976 1.71919 0.90136 0.90611 0.89292 0.83661 0.91336 0.91868 0.92512 0.77377 0.77720 0.90076 0.92526 0.92719 0.96165 0.92636 0.93628 0.96098 0.89075 0.92813 0.92284 0.89815 0.90456 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.42 36.01 0.38 0.00 16 2 C -0.02 -0.13 7.32 -35.63 -0.26 -0.40 16 3 C -0.20 -1.82 9.97 -39.70 -0.40 -2.21 16 4 C -0.18 -1.82 5.26 -104.74 -0.55 -2.37 16 5 C 0.23 2.59 2.57 -69.08 -0.18 2.41 16 6 H 0.09 1.18 7.46 -51.93 -0.39 0.80 16 7 C -0.16 -1.59 9.47 37.16 0.35 -1.24 16 8 N -0.74 -8.65 5.06 -59.82 -0.30 -8.95 16 9 C 0.70 10.83 8.50 -86.93 -0.74 10.09 16 10 O -0.59 -11.44 15.67 5.28 0.08 -11.36 16 11 N -0.74 -10.79 5.08 -58.63 -0.30 -11.09 16 12 C 0.17 3.03 2.42 -67.88 -0.16 2.87 16 13 C -0.14 -2.63 5.65 -26.61 -0.15 -2.78 16 14 C 0.15 3.25 6.52 -3.71 -0.02 3.22 16 15 N -0.59 -15.00 2.99 -172.33 -0.52 -15.51 16 16 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 17 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 18 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 19 N -0.90 -26.21 11.19 55.49 0.62 -25.59 16 20 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 25 C -0.15 -2.71 5.55 -26.61 -0.15 -2.86 16 26 C 0.00 -0.04 7.32 -35.63 -0.26 -0.30 16 27 C -0.08 -0.52 10.12 36.00 0.36 -0.15 16 28 O -0.17 -1.76 10.65 5.72 0.06 -1.70 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.15 1.04 7.24 -52.48 -0.38 0.66 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.53 7.73 -51.92 -0.40 0.13 16 35 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.39 3.61 7.14 -40.82 -0.29 3.32 16 37 H 0.39 4.57 8.62 -40.82 -0.35 4.22 16 38 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 0.54 7.46 -51.93 -0.39 0.15 16 LS Contribution 401.68 15.07 6.05 6.05 Total: -1.00 -33.42 401.68 -9.72 -43.14 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -8.36 Total: 5.09 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -2.03 Total: 3.31 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.49 Total: -61.14 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.14 Total: -13.06 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.42 -9.72 -43.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322567216.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.938 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds