Wall clock time and date at job start Tue Mar 31 2020 19:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34508 * 125.78698 * 2 1 4 4 C 1.41384 * 106.84247 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.58413 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47135 * 145.01956 * 5 4 3 7 7 C 1.52999 * 109.47103 * 265.02188 * 5 4 3 8 8 N 1.46499 * 109.47180 * 25.01771 * 5 4 3 9 9 C 1.34775 * 120.00466 * 155.00413 * 8 5 4 10 10 O 1.21594 * 119.99486 * 359.97438 * 9 8 5 11 11 N 1.34768 * 120.00410 * 180.02562 * 9 8 5 12 12 C 1.46501 * 120.00049 * 180.02562 * 11 9 8 13 13 C 1.53046 * 109.45737 * 275.02011 * 12 11 9 14 14 C 1.53188 * 109.31407 * 178.60329 * 13 12 11 15 15 N 1.46923 * 108.76490 * 54.65175 * 14 13 12 16 16 C 1.36941 * 120.62941 * 126.36545 * 15 14 13 17 17 H 1.08004 * 119.99900 * 331.86594 * 16 15 14 18 18 C 1.38809 * 120.00237 * 151.85630 * 16 15 14 19 19 N 1.31618 * 120.00375 * 343.07418 * 18 16 15 20 20 Si 1.86803 * 119.99907 * 163.06626 * 18 16 15 21 21 H 1.48503 * 109.47181 * 90.00512 * 20 18 16 22 22 H 1.48499 * 109.47205 * 210.00389 * 20 18 16 23 23 H 1.48507 * 109.47045 * 330.00581 * 20 18 16 24 24 C 1.46921 * 118.74295 * 306.38347 * 15 14 13 25 25 C 1.53048 * 109.46179 * 154.96869 * 12 11 9 26 26 C 1.34518 * 106.83572 * 0.21977 * 4 3 2 27 27 C 1.50696 * 125.78636 * 179.77312 * 26 4 3 28 28 O 1.34296 * 125.78798 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47321 * 90.00291 * 1 2 3 30 30 H 1.09006 * 109.47048 * 210.00402 * 1 2 3 31 31 H 1.08997 * 109.47319 * 329.99749 * 1 2 3 32 32 H 1.08007 * 126.58439 * 0.05321 * 3 2 1 33 33 H 1.08991 * 109.47452 * 179.97438 * 7 5 4 34 34 H 1.09009 * 109.46698 * 300.00045 * 7 5 4 35 35 H 1.09008 * 109.47054 * 59.99458 * 7 5 4 36 36 H 0.97009 * 120.00083 * 335.00286 * 8 5 4 37 37 H 0.97004 * 120.00402 * 359.97438 * 11 9 8 38 38 H 1.08995 * 109.46327 * 34.99432 * 12 11 9 39 39 H 1.09006 * 109.49503 * 298.56586 * 13 12 11 40 40 H 1.09003 * 109.49359 * 58.65975 * 13 12 11 41 41 H 1.09004 * 109.59412 * 294.86840 * 14 13 12 42 42 H 1.08997 * 109.70310 * 174.50876 * 14 13 12 43 43 H 0.97001 * 120.00447 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.59223 * 293.82220 * 24 15 14 45 45 H 1.08999 * 109.70446 * 173.46399 * 24 15 14 46 46 H 1.08994 * 109.49111 * 301.33396 * 25 12 11 47 47 H 1.08997 * 109.49591 * 61.39712 * 25 12 11 48 48 H 1.09005 * 109.47234 * 90.00356 * 27 26 4 49 49 H 1.09001 * 109.47431 * 210.00303 * 27 26 4 50 50 H 1.09002 * 109.47629 * 330.00275 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 4.8732 1.4851 -0.0014 6 1 5.6496 0.9966 0.5875 7 6 5.3638 1.6703 -1.4387 8 7 4.5677 2.7934 0.5827 9 6 5.5484 3.5245 1.1486 10 8 6.6867 3.0978 1.1747 11 7 5.2672 4.7278 1.6863 12 6 6.3334 5.5226 2.3009 13 6 6.5255 5.0813 3.7537 14 6 7.6643 5.8902 4.3826 15 7 7.3732 7.3211 4.2204 16 6 7.3715 8.1599 5.3028 17 1 7.1307 7.7759 6.2831 18 6 7.6793 9.5036 5.1402 19 7 8.2872 9.9119 4.0466 20 14 7.2305 10.7326 6.4736 21 1 8.3532 10.8480 7.4387 22 1 6.9693 12.0582 5.8573 23 1 6.0121 10.2686 7.1847 24 6 7.0838 7.8351 2.8747 25 6 5.9516 7.0042 2.2626 26 6 3.5813 -0.7121 -0.0059 27 6 4.7705 -1.6377 -0.0133 28 8 2.2924 -1.0894 -0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.9665 2.1205 0.0008 33 1 6.2620 2.2875 -1.4394 34 1 5.5911 0.6968 -1.8733 35 1 4.5872 2.1587 -2.0276 36 1 3.6595 3.1336 0.5621 37 1 4.3591 5.0680 1.6658 38 1 7.2619 5.3726 1.7500 39 1 5.6049 5.2545 4.3112 40 1 6.7743 4.0204 3.7817 41 1 8.6028 5.6493 3.8834 42 1 7.7427 5.6511 5.4432 43 1 8.5020 10.8510 3.9328 44 1 7.9750 7.7528 2.2526 45 1 6.7776 8.8792 2.9381 46 1 5.7920 7.3121 1.2293 47 1 5.0363 7.1589 2.8338 48 1 5.0604 -1.8651 1.0126 49 1 4.5091 -2.5611 -0.5301 50 1 5.6024 -1.1565 -0.5277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322567216.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:43 Heat of formation + Delta-G solvation = -27.274258 kcal Electronic energy + Delta-G solvation = -29083.117260 eV Core-core repulsion = 25111.313920 eV Total energy + Delta-G solvation = -3971.803340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.65680 -41.22312 -39.21178 -37.24211 -35.88637 -34.23862 -33.88885 -33.52253 -31.85647 -31.36996 -30.34783 -30.28693 -26.90648 -25.83512 -24.57771 -23.91371 -23.53131 -22.47855 -21.38925 -20.99143 -20.68903 -19.14949 -18.52575 -17.78286 -17.32736 -17.04734 -16.73329 -16.38379 -15.92093 -15.51876 -15.40691 -15.32790 -15.06927 -14.75363 -14.63172 -14.31127 -14.21069 -14.11334 -14.03260 -13.72122 -13.62745 -13.45973 -13.26992 -13.18985 -13.00575 -12.84660 -12.60392 -12.55012 -12.50595 -12.22762 -12.10086 -12.01027 -11.86257 -11.54823 -11.37312 -11.19175 -10.68870 -10.55061 -10.29355 -9.76978 -9.10932 -8.69994 -7.87146 -5.32751 0.71863 1.48342 1.49758 1.49979 1.60043 1.74240 1.99983 2.19885 2.52662 3.24753 3.32781 3.61241 3.67621 3.76046 3.91712 3.98513 4.07890 4.27770 4.33777 4.36053 4.37336 4.47235 4.47420 4.64975 4.66168 4.70219 4.72219 4.73874 4.82015 4.83491 4.86436 4.94947 5.02116 5.03829 5.07836 5.08083 5.17149 5.22402 5.30689 5.35462 5.47820 5.55992 5.59011 5.62804 5.65374 5.71244 6.05310 6.20817 6.39776 7.13622 7.15173 7.62745 7.84611 8.37847 9.20094 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023115 B = 0.002084 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.059098 B =13432.270247 C =13862.559822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.022 4.022 3 C -0.213 4.213 4 C -0.194 4.194 5 C 0.238 3.762 6 H 0.076 0.924 7 C -0.151 4.151 8 N -0.726 5.726 9 C 0.702 3.298 10 O -0.632 6.632 11 N -0.727 5.727 12 C 0.182 3.818 13 C -0.123 4.123 14 C 0.145 3.855 15 N -0.609 5.609 16 C -0.263 4.263 17 H 0.067 0.933 18 C -0.050 4.050 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.269 1.269 24 C 0.179 3.821 25 C -0.127 4.127 26 C -0.013 4.013 27 C -0.079 4.079 28 O -0.187 6.187 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.163 0.837 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.407 0.593 37 H 0.409 0.591 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.007 0.993 42 H 0.057 0.943 43 H 0.251 0.749 44 H -0.006 1.006 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.087 0.913 49 H 0.091 0.909 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.603 -21.442 -12.144 30.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 C -0.232 4.232 4 C -0.196 4.196 5 C 0.132 3.868 6 H 0.094 0.906 7 C -0.210 4.210 8 N -0.383 5.383 9 C 0.402 3.598 10 O -0.514 6.514 11 N -0.381 5.381 12 C 0.077 3.923 13 C -0.163 4.163 14 C 0.019 3.981 15 N -0.333 5.333 16 C -0.393 4.393 17 H 0.085 0.915 18 C -0.246 4.246 19 N -0.581 5.581 20 Si 0.797 3.203 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.194 1.194 24 C 0.053 3.947 25 C -0.167 4.167 26 C -0.064 4.064 27 C -0.135 4.135 28 O -0.084 6.084 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.180 0.820 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.244 0.756 37 H 0.245 0.755 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.025 0.975 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.012 0.988 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.089 0.911 48 H 0.105 0.895 49 H 0.109 0.891 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.628 -21.974 -12.154 30.117 hybrid contribution -0.326 1.402 0.623 1.568 sum -16.954 -20.572 -11.531 29.045 Atomic orbital electron populations 1.20466 0.82681 1.05105 1.04617 1.23023 0.95368 0.83564 1.05183 1.21528 0.91444 1.00426 1.09815 1.20186 0.95324 0.93515 1.10571 1.18837 0.92650 0.80800 0.94468 0.90595 1.22112 1.00982 1.02833 0.95062 1.44990 1.10822 1.19762 1.62711 1.16087 0.84600 0.81042 0.78047 1.90893 1.21760 1.72548 1.66158 1.45129 1.12801 1.18062 1.62128 1.20483 0.89580 0.89812 0.92446 1.22180 0.99648 0.98587 0.95927 1.20959 0.94481 0.84193 0.98489 1.44351 1.80901 1.03649 1.04360 1.19506 1.39803 0.90631 0.89398 0.91543 1.25826 0.98777 1.00209 0.99757 1.70184 1.43262 1.15134 1.29568 0.85259 0.78219 0.78221 0.78607 1.21365 1.21714 1.19386 1.20563 0.92948 0.97185 0.84053 1.22254 1.00182 0.93144 1.01092 1.22549 0.83832 0.94293 1.05701 1.20494 0.90588 0.98012 1.04423 1.83976 1.16530 1.35817 1.72123 0.88824 0.90107 0.87770 0.81953 0.93513 0.90185 0.91743 0.75623 0.75540 0.92585 0.91677 0.92488 0.97511 0.92457 0.93997 0.98751 0.91776 0.90512 0.91129 0.89451 0.89051 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.42 71.24 0.74 0.18 16 2 C -0.02 -0.34 7.32 24.83 0.18 -0.16 16 3 C -0.21 -3.42 9.97 22.19 0.22 -3.20 16 4 C -0.19 -3.63 5.26 -19.94 -0.10 -3.74 16 5 C 0.24 5.00 2.57 44.24 0.11 5.11 16 6 H 0.08 1.90 7.46 -2.39 -0.02 1.88 16 7 C -0.15 -2.91 9.47 71.98 0.68 -2.23 16 8 N -0.73 -15.70 5.06 -461.42 -2.33 -18.03 16 9 C 0.70 20.79 8.50 179.06 1.52 22.31 16 10 O -0.63 -24.47 15.67 -4.01 -0.06 -24.53 16 11 N -0.73 -19.78 5.08 -457.67 -2.33 -22.11 16 12 C 0.18 6.36 2.42 45.02 0.11 6.47 16 13 C -0.12 -4.55 5.65 30.67 0.17 -4.37 16 14 C 0.14 6.43 6.52 86.36 0.56 7.00 16 15 N -0.61 -31.15 2.99 -699.12 -2.09 -33.25 16 16 C -0.26 -14.57 9.58 84.03 0.81 -13.77 16 17 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 18 C -0.05 -2.81 4.92 84.86 0.42 -2.40 16 19 N -0.94 -55.41 11.19 21.65 0.24 -55.16 16 20 Si 0.97 44.64 29.59 68.60 2.03 46.67 16 21 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 C 0.18 8.62 5.30 86.36 0.46 9.08 16 25 C -0.13 -4.56 5.55 30.67 0.17 -4.39 16 26 C -0.01 -0.24 7.32 24.83 0.18 -0.06 16 27 C -0.08 -0.97 10.12 71.23 0.72 -0.25 16 28 O -0.19 -3.55 10.65 -2.44 -0.03 -3.57 16 29 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.10 0.48 8.14 -2.39 -0.02 0.47 16 32 H 0.16 1.87 7.24 -2.91 -0.02 1.85 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.24 7.73 -2.38 -0.02 1.22 16 35 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.41 6.44 7.14 -92.70 -0.66 5.78 16 37 H 0.41 8.29 8.62 -92.71 -0.80 7.50 16 38 H 0.06 2.28 7.58 -2.39 -0.02 2.27 16 39 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 42 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 43 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 44 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.06 3.44 6.06 -2.39 -0.01 3.42 16 46 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 48 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.10 1.06 7.46 -2.39 -0.02 1.04 16 Total: -1.00 -73.27 401.68 1.87 -71.40 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -0.51 Total: 23.00 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 6.95 Total: 15.59 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -6.51 Total: -128.55 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.09 Total: -28.10 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -73.27 1.87 -71.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322567216.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.121 kcal (2) G-P(sol) polarization free energy of solvation -73.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds