Wall clock time and date at job start Tue Mar 31 2020 19:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34518 * 125.79328 * 2 1 4 4 C 1.41377 * 106.84218 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.57877 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47233 * 219.99332 * 5 4 3 7 7 C 1.53002 * 109.47432 * 99.99408 * 5 4 3 8 8 N 1.46504 * 109.47224 * 339.99099 * 5 4 3 9 9 C 1.34777 * 120.00241 * 205.00018 * 8 5 4 10 10 O 1.21587 * 119.99720 * 0.02562 * 9 8 5 11 11 N 1.34768 * 119.99894 * 179.97438 * 9 8 5 12 12 C 1.46504 * 119.99993 * 180.02562 * 11 9 8 13 13 C 1.53039 * 109.45745 * 275.02863 * 12 11 9 14 14 C 1.53201 * 109.31212 * 178.60020 * 13 12 11 15 15 N 1.46925 * 108.76392 * 54.65528 * 14 13 12 16 16 C 1.36932 * 120.62962 * 126.36323 * 15 14 13 17 17 H 1.07996 * 120.00351 * 331.86050 * 16 15 14 18 18 C 1.38811 * 119.99987 * 151.86182 * 16 15 14 19 19 N 1.31624 * 120.00226 * 343.06485 * 18 16 15 20 20 Si 1.86801 * 120.00088 * 163.06448 * 18 16 15 21 21 H 1.48507 * 109.46725 * 90.00163 * 20 18 16 22 22 H 1.48502 * 109.47085 * 209.99668 * 20 18 16 23 23 H 1.48493 * 109.47489 * 330.00267 * 20 18 16 24 24 C 1.46932 * 118.73716 * 306.38722 * 15 14 13 25 25 C 1.53038 * 109.46103 * 154.97568 * 12 11 9 26 26 C 1.34511 * 106.84310 * 359.97438 * 4 3 2 27 27 C 1.50700 * 125.79215 * 180.26587 * 26 4 3 28 28 O 1.34302 * 108.42221 * 0.02562 * 26 4 3 29 29 H 1.08994 * 109.47088 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47134 * 300.01071 * 1 2 3 31 31 H 1.09003 * 109.46724 * 60.00333 * 1 2 3 32 32 H 1.08001 * 126.57621 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46884 * 59.99907 * 7 5 4 34 34 H 1.09000 * 109.47121 * 179.97438 * 7 5 4 35 35 H 1.08991 * 109.46998 * 299.99865 * 7 5 4 36 36 H 0.96999 * 119.99843 * 25.00668 * 8 5 4 37 37 H 0.96999 * 120.00190 * 0.02562 * 11 9 8 38 38 H 1.08994 * 109.45806 * 35.00197 * 12 11 9 39 39 H 1.08994 * 109.50209 * 298.56169 * 13 12 11 40 40 H 1.08998 * 109.50010 * 58.66653 * 13 12 11 41 41 H 1.08996 * 109.59484 * 294.86842 * 14 13 12 42 42 H 1.08997 * 109.70287 * 174.50968 * 14 13 12 43 43 H 0.96998 * 120.00209 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.58364 * 293.81817 * 24 15 14 45 45 H 1.08999 * 109.70237 * 173.46725 * 24 15 14 46 46 H 1.09000 * 109.49536 * 301.33766 * 25 12 11 47 47 H 1.09001 * 109.49627 * 61.40361 * 25 12 11 48 48 H 1.09005 * 109.47357 * 179.71974 * 27 26 4 49 49 H 1.09004 * 109.47346 * 299.72048 * 27 26 4 50 50 H 1.09004 * 109.47298 * 59.71936 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 0.0006 5 6 4.8732 1.4849 0.0014 6 1 5.6188 1.0415 -0.6588 7 6 5.4347 1.5670 1.4223 8 7 4.5415 2.8314 -0.4712 9 6 5.4944 3.6030 -1.0308 10 8 6.6292 3.1814 -1.1439 11 7 5.1891 4.8414 -1.4660 12 6 6.2247 5.6799 -2.0748 13 6 6.9969 6.4144 -0.9765 14 6 8.1013 7.2630 -1.6145 15 7 7.4967 8.1466 -2.6208 16 6 7.7100 9.4986 -2.5805 17 1 7.9088 9.9860 -1.6375 18 6 7.6706 10.2426 -3.7516 19 7 7.7634 9.6396 -4.9179 20 14 7.4859 12.0998 -3.6726 21 1 8.8298 12.7287 -3.6116 22 1 6.7701 12.5780 -4.8826 23 1 6.7112 12.4691 -2.4608 24 6 6.6585 7.5518 -3.6708 25 6 5.5705 6.6998 -3.0097 26 6 3.5814 -0.7122 0.0015 27 6 4.7705 -1.6379 0.0081 28 8 2.2924 -1.0895 0.0009 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.9666 2.1204 0.0004 33 1 5.6816 0.5652 1.7738 34 1 6.3336 2.1835 1.4227 35 1 4.6894 2.0103 2.0824 36 1 3.6362 3.1676 -0.3812 37 1 4.2837 5.1775 -1.3761 38 1 6.9110 5.0532 -2.6443 39 1 6.3157 7.0603 -0.4226 40 1 7.4431 5.6879 -0.2974 41 1 8.8328 6.6115 -2.0925 42 1 8.5921 7.8635 -0.8486 43 1 7.7355 10.1595 -5.7363 44 1 7.2724 6.9240 -4.3165 45 1 6.1952 8.3414 -4.2624 46 1 5.0014 6.1764 -3.7779 47 1 4.9025 7.3426 -2.4365 48 1 4.4260 -2.6721 0.0123 49 1 5.3746 -1.4599 -0.8817 50 1 5.3713 -1.4515 0.8983 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322567217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:49 Heat of formation + Delta-G solvation = -5.967339 kcal Electronic energy + Delta-G solvation = -29068.487991 eV Core-core repulsion = 25097.608588 eV Total energy + Delta-G solvation = -3970.879403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.97566 -39.97093 -37.64781 -36.13206 -34.28740 -33.36127 -33.03013 -31.98903 -30.38213 -29.87142 -29.79858 -28.92540 -25.29564 -24.94551 -23.58058 -22.30706 -22.07918 -21.40448 -20.29230 -19.85459 -19.28681 -17.87549 -17.06483 -16.64503 -16.58536 -15.93114 -15.11643 -14.83704 -14.69885 -14.59087 -14.13566 -13.84485 -13.74782 -13.69892 -13.53054 -13.45416 -13.12987 -13.06913 -13.01100 -12.89134 -12.69504 -12.49039 -12.31161 -12.10205 -11.93164 -11.41641 -11.28271 -11.09191 -10.81506 -10.68787 -10.46474 -10.24037 -10.00874 -9.97924 -9.92883 -9.71514 -9.50159 -9.15585 -8.57716 -8.45340 -8.39507 -6.65408 -5.77470 -3.19300 1.38790 2.22612 2.57815 2.85856 3.38414 3.43257 3.45331 3.47669 4.26103 4.38664 4.43720 4.51326 4.61151 4.83388 4.96151 5.05025 5.10799 5.11470 5.20703 5.25351 5.36681 5.37914 5.41018 5.45409 5.54543 5.55689 5.65807 5.68001 5.83913 5.91034 5.95053 6.05786 6.12782 6.23147 6.33543 6.40865 6.51650 6.55209 6.62661 6.65891 6.84539 6.88159 6.96561 7.03378 7.17607 7.35218 7.64914 7.81316 8.20888 8.46961 8.81799 9.23079 9.86526 10.43868 11.31513 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024856 B = 0.002062 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.198351 B =13576.331672 C =14121.604643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.015 4.015 3 C -0.201 4.201 4 C -0.180 4.180 5 C 0.236 3.764 6 H 0.094 0.906 7 C -0.158 4.158 8 N -0.744 5.744 9 C 0.703 3.297 10 O -0.591 6.591 11 N -0.739 5.739 12 C 0.169 3.831 13 C -0.139 4.139 14 C 0.148 3.852 15 N -0.593 5.593 16 C -0.251 4.251 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.175 3.825 25 C -0.146 4.146 26 C -0.005 4.005 27 C -0.077 4.077 28 O -0.173 6.173 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.146 0.854 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.392 0.608 37 H 0.390 0.610 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.254 0.746 44 H 0.021 0.979 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.076 0.924 49 H 0.088 0.912 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.403 -21.459 11.221 28.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 C -0.220 4.220 4 C -0.182 4.182 5 C 0.130 3.870 6 H 0.112 0.888 7 C -0.216 4.216 8 N -0.401 5.401 9 C 0.403 3.597 10 O -0.469 6.469 11 N -0.393 5.393 12 C 0.065 3.935 13 C -0.179 4.179 14 C 0.021 3.979 15 N -0.316 5.316 16 C -0.380 4.380 17 H 0.083 0.917 18 C -0.198 4.198 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.048 3.952 25 C -0.186 4.186 26 C -0.055 4.055 27 C -0.133 4.133 28 O -0.070 6.070 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.163 0.837 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.226 0.774 37 H 0.223 0.777 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.095 0.905 49 H 0.106 0.894 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.412 -22.045 10.931 28.024 hybrid contribution -1.052 1.499 0.078 1.833 sum -14.464 -20.546 11.009 27.432 Atomic orbital electron populations 1.20302 0.85060 1.03946 1.03655 1.22338 0.93931 0.84014 1.06224 1.21250 0.91900 0.99375 1.09510 1.20234 0.95351 0.93346 1.09290 1.18870 0.92051 0.80250 0.95835 0.88770 1.22163 1.01632 1.02212 0.95614 1.45160 1.12292 1.16077 1.66530 1.15984 0.84601 0.80941 0.78131 1.90909 1.19620 1.73646 1.62709 1.45539 1.13837 1.14402 1.65477 1.20898 0.88506 0.90397 0.93655 1.22385 0.99310 0.98503 0.97720 1.20880 0.92580 0.92254 0.92231 1.44092 1.54121 1.03073 1.30285 1.19173 1.44021 0.82472 0.92358 0.91706 1.25055 1.01072 0.98037 0.95592 1.70028 1.53462 1.34522 0.96788 0.86309 0.77841 0.85708 0.76988 1.21402 1.21591 1.20539 1.20734 0.89471 0.95136 0.89845 1.22540 1.00580 0.97321 0.98159 1.22060 0.83330 0.93820 1.06328 1.20376 0.91323 0.97582 1.04006 1.83978 1.16196 1.34975 1.71872 0.90668 0.89675 0.89626 0.83675 0.91880 0.91312 0.92530 0.77375 0.77723 0.90089 0.92520 0.92710 0.96171 0.92632 0.93629 0.96101 0.89071 0.92821 0.92278 0.90544 0.89352 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.42 36.00 0.38 0.00 16 2 C -0.02 -0.13 7.32 -35.62 -0.26 -0.39 16 3 C -0.20 -1.83 9.97 -39.70 -0.40 -2.22 16 4 C -0.18 -1.81 5.30 -104.75 -0.55 -2.37 16 5 C 0.24 2.60 2.75 -69.08 -0.19 2.41 16 6 H 0.09 1.19 7.57 -51.92 -0.39 0.79 16 7 C -0.16 -1.60 9.47 37.16 0.35 -1.25 16 8 N -0.74 -8.66 5.04 -59.81 -0.30 -8.96 16 9 C 0.70 10.84 8.49 -86.93 -0.74 10.10 16 10 O -0.59 -11.45 15.67 5.29 0.08 -11.36 16 11 N -0.74 -10.79 5.08 -58.64 -0.30 -11.08 16 12 C 0.17 3.03 2.42 -67.89 -0.16 2.87 16 13 C -0.14 -2.61 5.65 -26.61 -0.15 -2.76 16 14 C 0.15 3.24 6.52 -3.71 -0.02 3.21 16 15 N -0.59 -14.98 2.99 -172.32 -0.52 -15.50 16 16 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 17 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 18 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 19 N -0.90 -26.22 11.20 55.49 0.62 -25.60 16 20 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 25 C -0.15 -2.71 5.55 -26.61 -0.15 -2.86 16 26 C -0.01 -0.05 7.32 -35.63 -0.26 -0.31 16 27 C -0.08 -0.50 10.12 36.01 0.36 -0.14 16 28 O -0.17 -1.75 10.65 5.69 0.06 -1.69 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.15 1.05 7.11 -52.49 -0.37 0.68 16 33 H 0.06 0.52 7.46 -51.93 -0.39 0.14 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.39 3.61 7.02 -40.82 -0.29 3.33 16 37 H 0.39 4.57 8.62 -40.82 -0.35 4.22 16 38 H 0.08 1.65 7.57 -51.93 -0.39 1.25 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.09 0.47 7.46 -51.93 -0.39 0.08 16 LS Contribution 401.48 15.07 6.05 6.05 Total: -1.00 -33.43 401.48 -9.72 -43.15 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -8.34 Total: 5.08 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -2.05 Total: 3.31 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.49 Total: -61.14 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.14 Total: -13.05 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.43 -9.72 -43.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322567217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.182 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds