Wall clock time and date at job start Tue Mar 31 2020 19:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34518 * 125.79328 * 2 1 4 4 C 1.41377 * 106.84218 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.57877 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47233 * 219.99332 * 5 4 3 7 7 C 1.53002 * 109.47432 * 99.99408 * 5 4 3 8 8 N 1.46504 * 109.47224 * 339.99099 * 5 4 3 9 9 C 1.34777 * 120.00241 * 205.00018 * 8 5 4 10 10 O 1.21587 * 119.99720 * 0.02562 * 9 8 5 11 11 N 1.34768 * 119.99894 * 179.97438 * 9 8 5 12 12 C 1.46504 * 119.99993 * 180.02562 * 11 9 8 13 13 C 1.53039 * 109.45745 * 275.02863 * 12 11 9 14 14 C 1.53201 * 109.31212 * 178.60020 * 13 12 11 15 15 N 1.46925 * 108.76392 * 54.65528 * 14 13 12 16 16 C 1.36932 * 120.62962 * 126.36323 * 15 14 13 17 17 H 1.07996 * 120.00351 * 331.86050 * 16 15 14 18 18 C 1.38811 * 119.99987 * 151.86182 * 16 15 14 19 19 N 1.31624 * 120.00226 * 343.06485 * 18 16 15 20 20 Si 1.86801 * 120.00088 * 163.06448 * 18 16 15 21 21 H 1.48507 * 109.46725 * 90.00163 * 20 18 16 22 22 H 1.48502 * 109.47085 * 209.99668 * 20 18 16 23 23 H 1.48493 * 109.47489 * 330.00267 * 20 18 16 24 24 C 1.46932 * 118.73716 * 306.38722 * 15 14 13 25 25 C 1.53038 * 109.46103 * 154.97568 * 12 11 9 26 26 C 1.34511 * 106.84310 * 359.97438 * 4 3 2 27 27 C 1.50700 * 125.79215 * 180.26587 * 26 4 3 28 28 O 1.34302 * 108.42221 * 0.02562 * 26 4 3 29 29 H 1.08994 * 109.47088 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47134 * 300.01071 * 1 2 3 31 31 H 1.09003 * 109.46724 * 60.00333 * 1 2 3 32 32 H 1.08001 * 126.57621 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46884 * 59.99907 * 7 5 4 34 34 H 1.09000 * 109.47121 * 179.97438 * 7 5 4 35 35 H 1.08991 * 109.46998 * 299.99865 * 7 5 4 36 36 H 0.96999 * 119.99843 * 25.00668 * 8 5 4 37 37 H 0.96999 * 120.00190 * 0.02562 * 11 9 8 38 38 H 1.08994 * 109.45806 * 35.00197 * 12 11 9 39 39 H 1.08994 * 109.50209 * 298.56169 * 13 12 11 40 40 H 1.08998 * 109.50010 * 58.66653 * 13 12 11 41 41 H 1.08996 * 109.59484 * 294.86842 * 14 13 12 42 42 H 1.08997 * 109.70287 * 174.50968 * 14 13 12 43 43 H 0.96998 * 120.00209 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.58364 * 293.81817 * 24 15 14 45 45 H 1.08999 * 109.70237 * 173.46725 * 24 15 14 46 46 H 1.09000 * 109.49536 * 301.33766 * 25 12 11 47 47 H 1.09001 * 109.49627 * 61.40361 * 25 12 11 48 48 H 1.09005 * 109.47357 * 179.71974 * 27 26 4 49 49 H 1.09004 * 109.47346 * 299.72048 * 27 26 4 50 50 H 1.09004 * 109.47298 * 59.71936 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 0.0006 5 6 4.8732 1.4849 0.0014 6 1 5.6188 1.0415 -0.6588 7 6 5.4347 1.5670 1.4223 8 7 4.5415 2.8314 -0.4712 9 6 5.4944 3.6030 -1.0308 10 8 6.6292 3.1814 -1.1439 11 7 5.1891 4.8414 -1.4660 12 6 6.2247 5.6799 -2.0748 13 6 6.9969 6.4144 -0.9765 14 6 8.1013 7.2630 -1.6145 15 7 7.4967 8.1466 -2.6208 16 6 7.7100 9.4986 -2.5805 17 1 7.9088 9.9860 -1.6375 18 6 7.6706 10.2426 -3.7516 19 7 7.7634 9.6396 -4.9179 20 14 7.4859 12.0998 -3.6726 21 1 8.8298 12.7287 -3.6116 22 1 6.7701 12.5780 -4.8826 23 1 6.7112 12.4691 -2.4608 24 6 6.6585 7.5518 -3.6708 25 6 5.5705 6.6998 -3.0097 26 6 3.5814 -0.7122 0.0015 27 6 4.7705 -1.6379 0.0081 28 8 2.2924 -1.0895 0.0009 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.9666 2.1204 0.0004 33 1 5.6816 0.5652 1.7738 34 1 6.3336 2.1835 1.4227 35 1 4.6894 2.0103 2.0824 36 1 3.6362 3.1676 -0.3812 37 1 4.2837 5.1775 -1.3761 38 1 6.9110 5.0532 -2.6443 39 1 6.3157 7.0603 -0.4226 40 1 7.4431 5.6879 -0.2974 41 1 8.8328 6.6115 -2.0925 42 1 8.5921 7.8635 -0.8486 43 1 7.7355 10.1595 -5.7363 44 1 7.2724 6.9240 -4.3165 45 1 6.1952 8.3414 -4.2624 46 1 5.0014 6.1764 -3.7779 47 1 4.9025 7.3426 -2.4365 48 1 4.4260 -2.6721 0.0123 49 1 5.3746 -1.4599 -0.8817 50 1 5.3713 -1.4515 0.8983 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322567217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:48 Heat of formation + Delta-G solvation = -27.041019 kcal Electronic energy + Delta-G solvation = -29069.401814 eV Core-core repulsion = 25097.608588 eV Total energy + Delta-G solvation = -3971.793226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.65437 -41.22499 -39.21097 -37.24038 -35.88758 -34.23876 -33.88725 -33.51926 -31.85199 -31.36836 -30.33128 -30.30238 -26.90531 -25.83687 -24.58384 -23.90104 -23.52662 -22.48687 -21.39925 -20.98278 -20.68605 -19.14411 -18.52518 -17.80114 -17.32652 -17.04278 -16.75980 -16.25767 -15.92681 -15.59964 -15.41236 -15.34051 -15.06093 -14.78934 -14.49825 -14.36969 -14.22703 -14.13061 -14.03428 -13.71763 -13.64016 -13.48694 -13.22159 -13.19606 -13.00400 -12.80291 -12.60510 -12.57405 -12.50388 -12.23472 -12.09158 -12.01157 -11.85877 -11.55311 -11.37710 -11.18433 -10.69047 -10.55068 -10.29319 -9.76645 -9.10354 -8.69956 -7.87058 -5.32652 0.72644 1.48681 1.49878 1.51398 1.60141 1.71790 2.00755 2.19882 2.52767 3.24518 3.32602 3.61439 3.67714 3.76376 3.91736 3.99591 4.08130 4.28165 4.32842 4.36036 4.37944 4.46276 4.47582 4.61417 4.66495 4.70856 4.74401 4.76498 4.82042 4.83845 4.86550 4.95340 5.02218 5.03995 5.08265 5.08795 5.17181 5.21911 5.31048 5.36611 5.47813 5.55956 5.59035 5.62780 5.65491 5.71091 6.05231 6.21191 6.39837 7.13513 7.15168 7.62667 7.84684 8.37994 9.20205 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024856 B = 0.002062 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.198351 B =13576.331672 C =14121.604643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.022 4.022 3 C -0.214 4.214 4 C -0.194 4.194 5 C 0.239 3.761 6 H 0.075 0.925 7 C -0.151 4.151 8 N -0.727 5.727 9 C 0.702 3.298 10 O -0.632 6.632 11 N -0.727 5.727 12 C 0.182 3.818 13 C -0.122 4.122 14 C 0.145 3.855 15 N -0.609 5.609 16 C -0.263 4.263 17 H 0.067 0.933 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.269 1.269 24 C 0.179 3.821 25 C -0.127 4.127 26 C -0.014 4.014 27 C -0.078 4.078 28 O -0.186 6.186 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.162 0.838 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.407 0.593 37 H 0.409 0.591 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.006 0.994 42 H 0.057 0.943 43 H 0.251 0.749 44 H -0.006 1.006 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.681 -21.803 12.736 30.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 C -0.234 4.234 4 C -0.196 4.196 5 C 0.133 3.867 6 H 0.093 0.907 7 C -0.210 4.210 8 N -0.383 5.383 9 C 0.402 3.598 10 O -0.514 6.514 11 N -0.381 5.381 12 C 0.077 3.923 13 C -0.163 4.163 14 C 0.018 3.982 15 N -0.333 5.333 16 C -0.393 4.393 17 H 0.085 0.915 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.797 3.203 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.194 1.194 24 C 0.052 3.948 25 C -0.167 4.167 26 C -0.064 4.064 27 C -0.135 4.135 28 O -0.084 6.084 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.180 0.820 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.244 0.756 37 H 0.245 0.755 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.024 0.976 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.012 0.988 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.106 0.894 49 H 0.107 0.893 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.755 -22.413 12.488 30.108 hybrid contribution -0.319 1.519 -0.381 1.599 sum -16.074 -20.893 12.107 29.008 Atomic orbital electron populations 1.20465 0.82681 1.04771 1.04962 1.23021 0.95368 0.83561 1.05167 1.21501 0.91479 1.00429 1.09940 1.20184 0.95293 0.93570 1.10579 1.18829 0.92315 0.79726 0.95820 0.90658 1.22097 1.00690 1.02970 0.95206 1.44994 1.12282 1.15879 1.65183 1.16083 0.84506 0.81096 0.78081 1.90891 1.21657 1.74495 1.64314 1.45128 1.13994 1.13928 1.65073 1.20481 0.88758 0.90013 0.93088 1.22173 0.98384 0.98061 0.97658 1.20967 0.93478 0.92076 0.91630 1.44351 1.54924 1.03018 1.30960 1.19506 1.43517 0.83730 0.92524 0.91491 1.25834 1.01235 1.02333 0.95229 1.70188 1.54745 1.35997 0.97262 0.85254 0.77598 0.80353 0.77075 1.21374 1.21750 1.19351 1.20561 0.90139 0.94461 0.89590 1.22252 0.98889 0.96904 0.98641 1.22531 0.83841 0.94263 1.05782 1.20499 0.90545 0.97822 1.04592 1.83994 1.16544 1.35792 1.72068 0.90119 0.88108 0.88427 0.82033 0.90088 0.93485 0.91821 0.75626 0.75540 0.92684 0.91590 0.92376 0.97560 0.92401 0.94015 0.98809 0.91779 0.90631 0.91068 0.89352 0.89269 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.42 71.24 0.74 0.18 16 2 C -0.02 -0.34 7.32 24.83 0.18 -0.16 16 3 C -0.21 -3.47 9.97 22.19 0.22 -3.25 16 4 C -0.19 -3.64 5.30 -19.95 -0.11 -3.75 16 5 C 0.24 5.02 2.75 44.24 0.12 5.14 16 6 H 0.08 1.89 7.57 -2.38 -0.02 1.88 16 7 C -0.15 -2.89 9.47 71.98 0.68 -2.21 16 8 N -0.73 -15.74 5.04 -461.40 -2.33 -18.07 16 9 C 0.70 20.82 8.49 179.06 1.52 22.34 16 10 O -0.63 -24.49 15.67 -3.99 -0.06 -24.56 16 11 N -0.73 -19.80 5.08 -457.70 -2.33 -22.12 16 12 C 0.18 6.35 2.42 45.02 0.11 6.46 16 13 C -0.12 -4.49 5.65 30.67 0.17 -4.32 16 14 C 0.14 6.40 6.52 86.37 0.56 6.96 16 15 N -0.61 -31.12 2.99 -699.10 -2.09 -33.21 16 16 C -0.26 -14.52 9.58 84.03 0.81 -13.71 16 17 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 18 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 19 N -0.94 -55.49 11.20 21.65 0.24 -55.25 16 20 Si 0.97 44.64 29.59 68.60 2.03 46.67 16 21 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 C 0.18 8.64 5.30 86.36 0.46 9.09 16 25 C -0.13 -4.58 5.55 30.67 0.17 -4.41 16 26 C -0.01 -0.25 7.32 24.83 0.18 -0.07 16 27 C -0.08 -0.94 10.12 71.24 0.72 -0.22 16 28 O -0.19 -3.52 10.65 -2.54 -0.03 -3.55 16 29 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.16 1.90 7.11 -2.91 -0.02 1.88 16 33 H 0.08 1.23 7.46 -2.39 -0.02 1.21 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.41 6.46 7.02 -92.71 -0.65 5.81 16 37 H 0.41 8.30 8.62 -92.71 -0.80 7.50 16 38 H 0.05 2.25 7.57 -2.39 -0.02 2.24 16 39 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 43 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 44 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 45 H 0.06 3.44 6.06 -2.39 -0.01 3.43 16 46 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 48 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 49 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 50 H 0.10 0.93 7.46 -2.38 -0.02 0.91 16 Total: -1.00 -73.37 401.48 1.90 -71.48 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -0.50 Total: 22.96 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 6.96 Total: 15.66 kcal Atomic # 7 Polarization: -122.15 SS G_CDS: -6.50 Total: -128.65 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.09 Total: -28.11 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -73.37 1.90 -71.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322567217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.435 kcal (2) G-P(sol) polarization free energy of solvation -73.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds