Wall clock time and date at job start Tue Mar 31 2020 18:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 110.43158 * 2 1 4 4 O 1.21280 * 119.99747 * 122.35701 * 3 2 1 5 5 N 1.34777 * 119.99867 * 302.34738 * 3 2 1 6 6 C 1.46503 * 119.99801 * 179.97438 * 5 3 2 7 7 H 1.08997 * 109.46797 * 35.00288 * 6 5 3 8 8 C 1.52994 * 109.47021 * 155.00613 * 6 5 3 9 9 N 1.46906 * 109.46965 * 304.99621 * 8 6 5 10 10 C 1.46899 * 110.99913 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.47338 * 180.02562 * 10 9 8 12 12 O 1.21295 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00365 * 180.02562 * 11 10 9 14 14 C 1.37098 * 119.99955 * 179.97438 * 13 11 10 15 15 H 1.08000 * 120.00467 * 0.02562 * 14 13 11 16 16 C 1.38952 * 119.99849 * 179.97438 * 14 13 11 17 17 N 1.31412 * 120.00236 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00033 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47306 * 60.00138 * 18 16 14 20 20 H 1.48499 * 109.46956 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47053 * 300.00272 * 18 16 14 22 22 C 1.53003 * 109.47192 * 275.00513 * 6 5 3 23 23 C 1.53002 * 117.50020 * 128.61931 * 22 6 5 24 24 C 1.53001 * 60.00237 * 252.51193 * 23 22 6 25 25 C 1.51168 * 110.38156 * 237.61447 * 2 1 3 26 26 C 1.30527 * 111.11827 * 257.59089 * 25 2 1 27 27 C 1.51103 * 111.10224 * 0.02639 * 26 25 2 28 28 C 1.54631 * 104.72830 * 343.56558 * 27 26 25 29 29 H 1.09007 * 109.47030 * 297.64645 * 1 2 3 30 30 H 1.08994 * 109.47402 * 57.64820 * 1 2 3 31 31 H 1.09002 * 109.46720 * 177.65822 * 1 2 3 32 32 H 0.96993 * 120.00338 * 0.02562 * 5 3 2 33 33 H 1.08996 * 109.47448 * 65.00032 * 8 6 5 34 34 H 1.09003 * 109.47031 * 184.99882 * 8 6 5 35 35 H 1.00893 * 111.00018 * 303.95704 * 9 8 6 36 36 H 1.09004 * 109.47466 * 300.00608 * 10 9 8 37 37 H 1.09010 * 109.46907 * 60.00514 * 10 9 8 38 38 H 0.96998 * 120.00169 * 0.02562 * 13 11 10 39 39 H 0.96993 * 120.00523 * 179.97438 * 17 16 14 40 40 H 1.09000 * 115.54753 * 274.33325 * 22 6 5 41 41 H 1.09001 * 117.49683 * 0.02562 * 23 22 6 42 42 H 1.08996 * 117.49404 * 145.01614 * 23 22 6 43 43 H 1.08995 * 117.49652 * 252.51165 * 24 23 22 44 44 H 1.08999 * 117.49954 * 107.48888 * 24 23 22 45 45 H 1.08005 * 124.43314 * 77.60207 * 25 2 1 46 46 H 1.08003 * 124.44761 * 180.02562 * 26 25 2 47 47 H 1.08999 * 110.38500 * 224.74921 * 27 26 25 48 48 H 1.09004 * 110.38702 * 102.37636 * 27 26 25 49 49 H 1.09002 * 111.03841 * 142.66675 * 28 27 26 50 50 H 1.09002 * 111.03772 * 266.56179 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4123 0.0000 4 8 2.7945 1.7842 0.8873 5 7 1.7061 2.2617 -0.9861 6 6 2.2171 3.6348 -0.9858 7 1 3.2325 3.6444 -0.5897 8 6 2.2223 4.1773 -2.4163 9 7 2.9858 3.2684 -3.2819 10 6 3.0118 3.7581 -4.6666 11 6 3.8014 2.8019 -5.5228 12 8 4.2936 1.8098 -5.0282 13 7 3.9607 3.0491 -6.8381 14 6 4.6795 2.1795 -7.6169 15 1 5.1177 1.2960 -7.1766 16 6 4.8433 2.4341 -8.9730 17 7 4.3096 3.5087 -9.5090 18 14 5.8220 1.2488 -10.0344 19 1 5.1851 -0.0921 -9.9956 20 1 5.8489 1.7442 -11.4340 21 1 7.2107 1.1522 -9.5172 22 6 1.3200 4.5126 -0.1107 23 6 1.9975 5.3636 0.9653 24 6 1.1822 4.1322 1.3649 25 6 2.0564 -0.7590 -1.1966 26 6 2.4655 -1.9505 -0.8550 27 6 2.2797 -2.1856 0.6260 28 6 2.0688 -0.7755 1.2245 29 1 -0.3633 0.4769 0.9104 30 1 -0.3634 0.5499 -0.8681 31 1 -0.3633 -1.0269 -0.0420 32 1 1.1153 1.9643 -1.6955 33 1 1.1977 4.2510 -2.7807 34 1 2.6843 5.1645 -2.4288 35 1 3.9209 3.1327 -2.9282 36 1 1.9925 3.8287 -5.0463 37 1 3.4791 4.7426 -4.6950 38 1 3.5675 3.8428 -7.2335 39 1 4.4243 3.6867 -10.4555 40 1 0.4442 4.9311 -0.6065 41 1 3.0823 5.2985 1.0495 42 1 1.5674 6.3425 1.1773 43 1 0.2158 4.3009 1.8399 44 1 1.7305 3.2565 1.7122 45 1 2.0899 -0.3666 -2.2023 46 1 2.8820 -2.6734 -1.5409 47 1 3.1697 -2.6495 1.0513 48 1 1.4034 -2.8089 0.8045 49 1 1.3330 -0.7977 2.0284 50 1 3.0116 -0.3527 1.5716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323046072.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:47 Heat of formation + Delta-G solvation = -33.676200 kcal Electronic energy + Delta-G solvation = -29414.782762 eV Core-core repulsion = 25442.701813 eV Total energy + Delta-G solvation = -3972.080949 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.69681 -38.76591 -38.18370 -36.96594 -35.58446 -34.03682 -33.57643 -31.44797 -31.21002 -29.44643 -28.77573 -26.33800 -25.56324 -24.14873 -22.64277 -22.23141 -21.98488 -20.45153 -19.89025 -19.26212 -18.82114 -17.91227 -17.17262 -16.58158 -16.20500 -15.78328 -15.43150 -15.17897 -14.93204 -14.59356 -14.40860 -14.25527 -13.80691 -13.46360 -13.39388 -13.23923 -13.09288 -12.95608 -12.57203 -12.15297 -12.06607 -11.90017 -11.76290 -11.57670 -11.52784 -11.51012 -11.42229 -11.28540 -11.19332 -11.03093 -10.90197 -10.45766 -10.43324 -10.29808 -10.22155 -9.69819 -9.51520 -8.96971 -8.88298 -8.49232 -8.11493 -7.97829 -6.43378 -3.84283 2.14606 2.77308 3.14953 3.18855 3.24668 3.29046 3.83113 3.89053 4.02466 4.24010 4.35455 4.48496 4.69765 4.81412 4.81735 4.88759 4.97924 5.01229 5.13620 5.17929 5.21144 5.22040 5.29071 5.35438 5.40773 5.52055 5.55719 5.58375 5.58884 5.71056 5.77017 5.80139 5.81415 5.87891 5.93249 5.93868 6.03595 6.07072 6.16696 6.23422 6.25938 6.49701 6.57711 6.80685 7.12965 7.53370 7.57757 7.64507 8.04289 8.34032 8.59462 9.16186 9.52509 10.03956 10.74297 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011485 B = 0.002824 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.284430 B = 9913.112092 C =11880.060755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.057 4.057 3 C 0.534 3.466 4 O -0.547 6.547 5 N -0.700 5.700 6 C 0.179 3.821 7 H 0.086 0.914 8 C 0.052 3.948 9 N -0.666 5.666 10 C 0.051 3.949 11 C 0.440 3.560 12 O -0.582 6.582 13 N -0.563 5.563 14 C -0.300 4.300 15 H 0.102 0.898 16 C 0.023 3.977 17 N -0.902 5.902 18 Si 0.930 3.070 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.274 1.274 22 C -0.168 4.168 23 C -0.172 4.172 24 C -0.181 4.181 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.102 4.102 28 C -0.106 4.106 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.405 0.595 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.351 0.649 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.119 0.881 45 H 0.136 0.864 46 H 0.128 0.872 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.073 0.927 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.459 -0.933 19.296 21.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.060 4.060 3 C 0.321 3.679 4 O -0.425 6.425 5 N -0.349 5.349 6 C 0.074 3.926 7 H 0.104 0.896 8 C -0.078 4.078 9 N -0.298 5.298 10 C -0.082 4.082 11 C 0.226 3.774 12 O -0.466 6.466 13 N -0.200 5.200 14 C -0.430 4.430 15 H 0.120 0.880 16 C -0.179 4.179 17 N -0.544 5.544 18 Si 0.757 3.243 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.188 4.188 23 C -0.210 4.210 24 C -0.218 4.218 25 C -0.171 4.171 26 C -0.176 4.176 27 C -0.139 4.139 28 C -0.144 4.144 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.240 0.760 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.170 0.830 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.137 0.863 45 H 0.154 0.846 46 H 0.146 0.854 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.092 0.908 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.118 -1.679 19.922 22.407 hybrid contribution 0.496 0.728 -1.408 1.660 sum -9.622 -0.951 18.514 20.887 Atomic orbital electron populations 1.21741 0.91916 1.02846 1.02316 1.20670 0.96902 0.92289 0.96176 1.20301 0.79901 0.86586 0.81142 1.90580 1.37029 1.77739 1.37166 1.45770 1.50659 1.11305 1.27162 1.20470 0.97349 0.80723 0.94057 0.89598 1.22236 0.99808 0.94373 0.91416 1.60052 1.21782 1.47198 1.00782 1.21677 1.00967 0.96199 0.89358 1.19794 0.85978 0.88462 0.83212 1.90531 1.53129 1.29960 1.72995 1.41853 1.47547 1.24062 1.06535 1.19650 1.28413 1.05047 0.89850 0.87995 1.25255 0.98034 0.97316 0.97271 1.69598 1.44972 1.26071 1.13716 0.85925 0.79970 0.80046 0.78333 1.19868 1.20970 1.19908 1.22644 1.01851 1.02985 0.91296 1.22909 0.99593 0.95350 1.03107 1.23263 1.01588 1.00598 0.96351 1.23182 0.99916 0.95751 0.98205 1.23305 0.99657 0.97752 0.96873 1.21400 1.01727 0.97370 0.93366 1.22487 1.02550 0.93924 0.95433 0.92033 0.91922 0.91449 0.76002 0.90471 0.93807 0.82991 0.89616 0.93860 0.77489 0.91809 0.87834 0.88770 0.89089 0.89710 0.86316 0.84575 0.85401 0.91021 0.90767 0.90817 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 8.39 37.16 0.31 -0.80 16 2 C -0.06 -0.62 0.74 -155.72 -0.12 -0.73 16 3 C 0.53 6.83 5.88 -10.98 -0.06 6.76 16 4 O -0.55 -8.46 12.51 5.56 0.07 -8.39 16 5 N -0.70 -8.01 4.64 -53.80 -0.25 -8.26 16 6 C 0.18 2.03 2.51 -67.93 -0.17 1.86 16 7 H 0.09 1.16 7.33 -51.93 -0.38 0.78 16 8 C 0.05 0.58 5.23 -3.82 -0.02 0.56 16 9 N -0.67 -10.00 5.85 -115.05 -0.67 -10.67 16 10 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 11 C 0.44 10.13 7.82 -10.99 -0.09 10.04 16 12 O -0.58 -15.48 15.78 5.54 0.09 -15.39 16 13 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 14 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 15 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 16 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 17 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 18 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 C -0.17 -1.67 5.36 -90.61 -0.49 -2.15 16 23 C -0.17 -1.68 10.18 -26.73 -0.27 -1.95 16 24 C -0.18 -1.92 9.73 -26.73 -0.26 -2.18 16 25 C -0.15 -1.81 9.37 -35.66 -0.33 -2.15 16 26 C -0.16 -1.74 10.78 -35.70 -0.38 -2.12 16 27 C -0.10 -0.95 6.81 -26.83 -0.18 -1.14 16 28 C -0.11 -1.11 6.01 -25.01 -0.15 -1.26 16 29 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.06 0.50 7.45 -51.93 -0.39 0.11 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.40 4.34 7.91 -40.82 -0.32 4.02 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.35 5.84 8.43 -39.30 -0.33 5.51 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 39 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.10 0.92 8.11 -51.93 -0.42 0.50 16 41 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.12 1.54 5.02 -51.93 -0.26 1.28 16 45 H 0.14 1.79 8.06 -52.48 -0.42 1.36 16 46 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.66 7.90 -51.93 -0.41 0.25 16 50 H 0.09 1.11 6.99 -51.93 -0.36 0.74 16 LS Contribution 406.25 15.07 6.12 6.12 Total: -1.00 -31.36 406.25 -9.69 -41.05 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: -8.20 Total: 19.73 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.49 Total: -2.37 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.26 Total: -56.69 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: 0.16 Total: -23.78 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.36 -9.69 -41.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323046072.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.375 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds