Wall clock time and date at job start Tue Mar 31 2020 18:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 110.43158 * 2 1 4 4 O 1.21280 * 119.99747 * 122.35701 * 3 2 1 5 5 N 1.34777 * 119.99867 * 302.34738 * 3 2 1 6 6 C 1.46503 * 119.99801 * 179.97438 * 5 3 2 7 7 H 1.08997 * 109.46797 * 35.00288 * 6 5 3 8 8 C 1.52994 * 109.47021 * 155.00613 * 6 5 3 9 9 N 1.46906 * 109.46965 * 304.99621 * 8 6 5 10 10 C 1.46899 * 110.99913 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.47338 * 180.02562 * 10 9 8 12 12 O 1.21295 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00365 * 180.02562 * 11 10 9 14 14 C 1.37098 * 119.99955 * 179.97438 * 13 11 10 15 15 H 1.08000 * 120.00467 * 0.02562 * 14 13 11 16 16 C 1.38952 * 119.99849 * 179.97438 * 14 13 11 17 17 N 1.31412 * 120.00236 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00033 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47306 * 60.00138 * 18 16 14 20 20 H 1.48499 * 109.46956 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47053 * 300.00272 * 18 16 14 22 22 C 1.53003 * 109.47192 * 275.00513 * 6 5 3 23 23 C 1.53002 * 117.50020 * 128.61931 * 22 6 5 24 24 C 1.53001 * 60.00237 * 252.51193 * 23 22 6 25 25 C 1.51168 * 110.38156 * 237.61447 * 2 1 3 26 26 C 1.30527 * 111.11827 * 257.59089 * 25 2 1 27 27 C 1.51103 * 111.10224 * 0.02639 * 26 25 2 28 28 C 1.54631 * 104.72830 * 343.56558 * 27 26 25 29 29 H 1.09007 * 109.47030 * 297.64645 * 1 2 3 30 30 H 1.08994 * 109.47402 * 57.64820 * 1 2 3 31 31 H 1.09002 * 109.46720 * 177.65822 * 1 2 3 32 32 H 0.96993 * 120.00338 * 0.02562 * 5 3 2 33 33 H 1.08996 * 109.47448 * 65.00032 * 8 6 5 34 34 H 1.09003 * 109.47031 * 184.99882 * 8 6 5 35 35 H 1.00893 * 111.00018 * 303.95704 * 9 8 6 36 36 H 1.09004 * 109.47466 * 300.00608 * 10 9 8 37 37 H 1.09010 * 109.46907 * 60.00514 * 10 9 8 38 38 H 0.96998 * 120.00169 * 0.02562 * 13 11 10 39 39 H 0.96993 * 120.00523 * 179.97438 * 17 16 14 40 40 H 1.09000 * 115.54753 * 274.33325 * 22 6 5 41 41 H 1.09001 * 117.49683 * 0.02562 * 23 22 6 42 42 H 1.08996 * 117.49404 * 145.01614 * 23 22 6 43 43 H 1.08995 * 117.49652 * 252.51165 * 24 23 22 44 44 H 1.08999 * 117.49954 * 107.48888 * 24 23 22 45 45 H 1.08005 * 124.43314 * 77.60207 * 25 2 1 46 46 H 1.08003 * 124.44761 * 180.02562 * 26 25 2 47 47 H 1.08999 * 110.38500 * 224.74921 * 27 26 25 48 48 H 1.09004 * 110.38702 * 102.37636 * 27 26 25 49 49 H 1.09002 * 111.03841 * 142.66675 * 28 27 26 50 50 H 1.09002 * 111.03772 * 266.56179 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4123 0.0000 4 8 2.7945 1.7842 0.8873 5 7 1.7061 2.2617 -0.9861 6 6 2.2171 3.6348 -0.9858 7 1 3.2325 3.6444 -0.5897 8 6 2.2223 4.1773 -2.4163 9 7 2.9858 3.2684 -3.2819 10 6 3.0118 3.7581 -4.6666 11 6 3.8014 2.8019 -5.5228 12 8 4.2936 1.8098 -5.0282 13 7 3.9607 3.0491 -6.8381 14 6 4.6795 2.1795 -7.6169 15 1 5.1177 1.2960 -7.1766 16 6 4.8433 2.4341 -8.9730 17 7 4.3096 3.5087 -9.5090 18 14 5.8220 1.2488 -10.0344 19 1 5.1851 -0.0921 -9.9956 20 1 5.8489 1.7442 -11.4340 21 1 7.2107 1.1522 -9.5172 22 6 1.3200 4.5126 -0.1107 23 6 1.9975 5.3636 0.9653 24 6 1.1822 4.1322 1.3649 25 6 2.0564 -0.7590 -1.1966 26 6 2.4655 -1.9505 -0.8550 27 6 2.2797 -2.1856 0.6260 28 6 2.0688 -0.7755 1.2245 29 1 -0.3633 0.4769 0.9104 30 1 -0.3634 0.5499 -0.8681 31 1 -0.3633 -1.0269 -0.0420 32 1 1.1153 1.9643 -1.6955 33 1 1.1977 4.2510 -2.7807 34 1 2.6843 5.1645 -2.4288 35 1 3.9209 3.1327 -2.9282 36 1 1.9925 3.8287 -5.0463 37 1 3.4791 4.7426 -4.6950 38 1 3.5675 3.8428 -7.2335 39 1 4.4243 3.6867 -10.4555 40 1 0.4442 4.9311 -0.6065 41 1 3.0823 5.2985 1.0495 42 1 1.5674 6.3425 1.1773 43 1 0.2158 4.3009 1.8399 44 1 1.7305 3.2565 1.7122 45 1 2.0899 -0.3666 -2.2023 46 1 2.8820 -2.6734 -1.5409 47 1 3.1697 -2.6495 1.0513 48 1 1.4034 -2.8089 0.8045 49 1 1.3330 -0.7977 2.0284 50 1 3.0116 -0.3527 1.5716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323046072.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:46 Heat of formation + Delta-G solvation = -54.926636 kcal Electronic energy + Delta-G solvation = -29415.704250 eV Core-core repulsion = 25442.701813 eV Total energy + Delta-G solvation = -3973.002437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.63265 -40.16846 -39.48339 -37.94425 -36.74469 -35.86940 -34.76758 -33.25886 -32.26003 -30.49810 -29.69827 -27.85221 -26.40854 -25.78390 -23.58703 -23.10473 -22.90720 -21.44360 -20.97514 -20.73534 -19.91625 -19.73986 -18.19749 -17.72199 -17.50217 -17.06140 -16.50592 -16.33988 -16.21429 -15.93878 -15.75363 -15.59288 -15.00595 -14.77371 -14.63692 -14.33253 -14.15172 -13.84214 -13.60834 -13.42821 -13.32116 -13.06614 -12.97753 -12.78111 -12.77030 -12.58203 -12.43449 -12.36762 -12.32612 -12.14953 -12.13201 -12.02762 -11.71648 -11.49954 -11.25303 -11.12171 -10.66360 -10.33861 -10.01043 -9.87787 -9.82345 -9.35370 -8.46706 -5.95164 1.23846 1.39202 1.41225 1.51790 1.79449 2.06766 2.23625 2.29130 2.85121 3.05004 3.20913 3.48562 3.51861 3.63929 3.74235 3.97357 4.00981 4.07018 4.14574 4.23951 4.28892 4.35042 4.37994 4.42375 4.47843 4.53862 4.61311 4.65017 4.71061 4.78708 4.82428 4.83219 4.93378 4.97831 5.01962 5.05027 5.20077 5.21842 5.28006 5.35630 5.40397 5.40612 5.60793 5.63407 5.86348 5.90253 6.08504 6.29431 6.60725 6.69031 7.13146 7.37558 7.57347 8.13025 8.70464 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011485 B = 0.002824 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.284430 B = 9913.112092 C =11880.060755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.053 4.053 3 C 0.528 3.472 4 O -0.579 6.579 5 N -0.694 5.694 6 C 0.182 3.818 7 H 0.059 0.941 8 C 0.058 3.942 9 N -0.675 5.675 10 C 0.066 3.934 11 C 0.437 3.563 12 O -0.623 6.623 13 N -0.573 5.573 14 C -0.334 4.334 15 H 0.077 0.923 16 C -0.011 4.011 17 N -0.920 5.920 18 Si 0.990 3.010 19 H -0.272 1.272 20 H -0.270 1.270 21 H -0.273 1.273 22 C -0.160 4.160 23 C -0.168 4.168 24 C -0.188 4.188 25 C -0.172 4.172 26 C -0.158 4.158 27 C -0.096 4.096 28 C -0.107 4.107 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.409 0.591 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.338 0.662 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.125 0.875 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.118 0.882 46 H 0.132 0.868 47 H 0.077 0.923 48 H 0.097 0.903 49 H 0.090 0.910 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.175 -0.410 19.350 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.056 4.056 3 C 0.315 3.685 4 O -0.459 6.459 5 N -0.343 5.343 6 C 0.076 3.924 7 H 0.077 0.923 8 C -0.071 4.071 9 N -0.307 5.307 10 C -0.066 4.066 11 C 0.225 3.775 12 O -0.509 6.509 13 N -0.210 5.210 14 C -0.464 4.464 15 H 0.095 0.905 16 C -0.211 4.211 17 N -0.561 5.561 18 Si 0.814 3.186 19 H -0.197 1.197 20 H -0.195 1.195 21 H -0.199 1.199 22 C -0.179 4.179 23 C -0.206 4.206 24 C -0.225 4.225 25 C -0.190 4.190 26 C -0.176 4.176 27 C -0.133 4.133 28 C -0.145 4.145 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.245 0.755 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.156 0.844 36 H 0.128 0.872 37 H 0.083 0.917 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.143 0.857 41 H 0.099 0.901 42 H 0.130 0.870 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.136 0.864 46 H 0.150 0.850 47 H 0.096 0.904 48 H 0.115 0.885 49 H 0.109 0.891 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.868 -1.126 19.964 23.252 hybrid contribution 1.061 0.562 -1.372 1.824 sum -10.806 -0.563 18.592 21.512 Atomic orbital electron populations 1.21736 0.89883 1.03797 1.02915 1.20684 0.98442 0.90754 0.95723 1.20711 0.79485 0.87455 0.80822 1.90570 1.38468 1.78471 1.38440 1.45761 1.50275 1.11358 1.26857 1.20422 0.96471 0.81050 0.94429 0.92328 1.22293 1.00317 0.94072 0.90381 1.60053 1.21331 1.48772 1.00512 1.21541 1.01096 0.94944 0.89023 1.20920 0.85007 0.88627 0.82966 1.90506 1.54629 1.32089 1.73689 1.41915 1.47868 1.23999 1.07265 1.19608 1.30261 1.05485 0.91021 0.90476 1.25995 0.98539 0.98798 0.97789 1.69654 1.45296 1.26894 1.14249 0.85033 0.78396 0.78067 0.77130 1.19681 1.19453 1.19859 1.22616 1.02062 1.02501 0.90769 1.22959 0.98957 0.96004 1.02655 1.23184 1.02159 1.00130 0.97009 1.23140 1.01459 0.96512 0.97890 1.23559 0.98484 0.97478 0.98085 1.21417 1.03023 0.97015 0.91854 1.22480 1.01774 0.94361 0.95845 0.91335 0.91405 0.90308 0.75451 0.88322 0.92377 0.84407 0.87154 0.91665 0.76960 0.91296 0.85681 0.90058 0.87029 0.88204 0.88883 0.86398 0.84995 0.90404 0.88485 0.89099 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.39 71.98 0.60 -1.36 16 2 C -0.05 -1.14 0.74 -52.97 -0.04 -1.18 16 3 C 0.53 13.77 5.88 87.66 0.52 14.29 16 4 O -0.58 -18.71 12.51 -3.03 -0.04 -18.75 16 5 N -0.69 -15.73 4.64 -442.53 -2.05 -17.78 16 6 C 0.18 3.99 2.51 44.99 0.11 4.10 16 7 H 0.06 1.63 7.33 -2.39 -0.02 1.61 16 8 C 0.06 1.20 5.23 86.30 0.45 1.65 16 9 N -0.68 -19.68 5.85 -517.92 -3.03 -22.71 16 10 C 0.07 2.11 6.17 85.56 0.53 2.64 16 11 C 0.44 20.26 7.82 87.66 0.69 20.94 16 12 O -0.62 -34.04 15.78 -3.08 -0.05 -34.09 16 13 N -0.57 -28.90 5.29 -306.99 -1.62 -30.52 16 14 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 15 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 16 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 17 N -0.92 -49.25 13.05 21.66 0.28 -48.97 16 18 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 C -0.16 -2.88 5.36 -10.79 -0.06 -2.94 16 23 C -0.17 -3.05 10.18 30.60 0.31 -2.74 16 24 C -0.19 -3.79 9.73 30.60 0.30 -3.49 16 25 C -0.17 -4.16 9.37 26.28 0.25 -3.91 16 26 C -0.16 -3.45 10.78 26.26 0.28 -3.16 16 27 C -0.10 -1.70 6.81 30.53 0.21 -1.49 16 28 C -0.11 -2.20 6.01 31.71 0.19 -2.01 16 29 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.07 0.98 7.45 -2.39 -0.02 0.96 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.41 8.49 7.91 -92.71 -0.73 7.76 16 33 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.34 11.39 8.43 -89.70 -0.76 10.64 16 36 H 0.11 3.03 8.14 -2.39 -0.02 3.02 16 37 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.40 18.91 7.90 -92.71 -0.73 18.17 16 39 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 40 H 0.13 1.77 8.11 -2.39 -0.02 1.75 16 41 H 0.08 1.68 8.05 -2.39 -0.02 1.66 16 42 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.09 2.45 5.02 -2.39 -0.01 2.44 16 45 H 0.12 3.25 8.06 -2.91 -0.02 3.23 16 46 H 0.13 2.70 8.06 -2.91 -0.02 2.67 16 47 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.09 1.52 7.90 -2.39 -0.02 1.50 16 50 H 0.06 1.63 6.99 -2.39 -0.02 1.61 16 Total: -1.00 -69.79 406.25 -0.12 -69.91 By element: Atomic # 1 Polarization: 56.21 SS G_CDS: -1.26 Total: 54.96 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 5.62 Total: 3.15 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -6.42 Total: -119.99 kcal Atomic # 8 Polarization: -52.76 SS G_CDS: -0.09 Total: -52.84 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -69.79 -0.12 -69.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323046072.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.981 kcal (2) G-P(sol) polarization free energy of solvation -69.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds