Wall clock time and date at job start Tue Mar 31 2020 18:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 110.34515 * 2 1 4 4 O 1.21287 * 120.00269 * 239.30036 * 3 2 1 5 5 N 1.34778 * 119.99804 * 59.30329 * 3 2 1 6 6 C 1.46501 * 120.00088 * 180.02562 * 5 3 2 7 7 H 1.09004 * 109.47213 * 34.99475 * 6 5 3 8 8 C 1.53002 * 109.47136 * 154.99824 * 6 5 3 9 9 N 1.46899 * 109.47024 * 304.99973 * 8 6 5 10 10 C 1.46899 * 110.99729 * 180.02562 * 9 8 6 11 11 C 1.50711 * 109.46797 * 179.97438 * 10 9 8 12 12 O 1.21289 * 119.99873 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99436 * 179.97438 * 11 10 9 14 14 C 1.37106 * 119.99519 * 180.02562 * 13 11 10 15 15 H 1.07997 * 119.99836 * 359.97438 * 14 13 11 16 16 C 1.38952 * 119.99742 * 179.97438 * 14 13 11 17 17 N 1.31415 * 119.99418 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00097 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.46954 * 90.00046 * 18 16 14 20 20 H 1.48500 * 109.47386 * 209.99654 * 18 16 14 21 21 H 1.48494 * 109.47283 * 329.99923 * 18 16 14 22 22 C 1.53001 * 109.46836 * 274.99635 * 6 5 3 23 23 C 1.53004 * 117.49622 * 128.62381 * 22 6 5 24 24 C 1.52996 * 117.49735 * 60.00336 * 22 6 5 25 25 C 1.51102 * 110.39125 * 122.29144 * 2 1 3 26 26 C 1.30521 * 111.10797 * 102.37234 * 25 2 1 27 27 C 1.51105 * 111.10139 * 0.02562 * 26 25 2 28 28 C 1.54634 * 104.72740 * 16.43836 * 27 26 25 29 29 H 1.09002 * 109.47153 * 299.16240 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.16431 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.16412 * 1 2 3 32 32 H 0.96996 * 119.99782 * 359.97438 * 5 3 2 33 33 H 1.08996 * 109.47180 * 65.00023 * 8 6 5 34 34 H 1.08999 * 109.46985 * 184.99870 * 8 6 5 35 35 H 1.00909 * 110.99828 * 303.95306 * 9 8 6 36 36 H 1.08999 * 109.46839 * 299.99422 * 10 9 8 37 37 H 1.09001 * 109.47489 * 60.00331 * 10 9 8 38 38 H 0.96996 * 120.00419 * 359.97438 * 13 11 10 39 39 H 0.97001 * 119.99231 * 179.97438 * 17 16 14 40 40 H 1.08998 * 115.55085 * 274.32871 * 22 6 5 41 41 H 1.08999 * 117.49956 * 359.97438 * 23 22 6 42 42 H 1.08992 * 117.49999 * 145.02224 * 23 22 6 43 43 H 1.09009 * 117.49897 * 214.97719 * 24 22 6 44 44 H 1.09004 * 117.50359 * 359.97438 * 24 22 6 45 45 H 1.08004 * 124.44272 * 282.35564 * 25 2 1 46 46 H 1.07991 * 124.45382 * 180.02562 * 26 25 2 47 47 H 1.09007 * 110.38467 * 135.24767 * 27 26 25 48 48 H 1.08998 * 110.38791 * 257.50894 * 27 26 25 49 49 H 1.08992 * 111.04002 * 217.33201 * 28 27 26 50 50 H 1.08996 * 111.03907 * 93.39406 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7676 1.7952 -0.9032 5 7 1.7295 2.2520 1.0037 6 6 2.2384 3.6258 1.0035 7 1 2.2921 3.9932 -0.0214 8 6 1.2983 4.5180 1.8166 9 7 -0.0676 4.3992 1.2891 10 6 -0.9999 5.2446 2.0469 11 6 -2.3876 5.0972 1.4778 12 8 -2.5807 4.3608 0.5336 13 7 -3.4138 5.7837 2.0181 14 6 -4.6763 5.6492 1.5007 15 1 -4.8483 4.9935 0.6600 16 6 -5.7345 6.3565 2.0581 17 7 -6.9445 6.2280 1.5618 18 14 -5.4368 7.4912 3.5117 19 1 -5.1114 8.8533 3.0179 20 1 -6.6590 7.5487 4.3533 21 1 -4.3035 6.9736 4.3197 22 6 3.6346 3.6525 1.6287 23 6 4.7489 4.3425 0.8393 24 6 4.7258 2.8171 0.9563 25 6 2.0565 -0.7566 1.1973 26 6 2.4648 -1.9489 0.8575 27 6 2.2793 -2.1859 -0.6233 28 6 2.0696 -0.7765 -1.2238 29 1 -0.3633 0.5008 0.8974 30 1 -0.3633 -1.0276 -0.0150 31 1 -0.3634 0.5268 -0.8824 32 1 1.1585 1.9464 1.7258 33 1 1.3131 4.2052 2.8606 34 1 1.6273 5.5546 1.7432 35 1 -0.0959 4.6219 0.3053 36 1 -1.0011 4.9371 3.0926 37 1 -0.6867 6.2861 1.9746 38 1 -3.2594 6.3723 2.7734 39 1 -7.6833 6.7215 1.9511 40 1 3.6616 3.7351 2.7152 41 1 4.4875 4.7769 -0.1256 42 1 5.5094 4.8792 1.4064 43 1 5.4711 2.3503 1.6004 44 1 4.4490 2.2481 0.0687 45 1 2.0906 -0.3625 2.2023 46 1 2.8806 -2.6711 1.5443 47 1 3.1691 -2.6510 -1.0477 48 1 1.4038 -2.8105 -0.8011 49 1 1.3341 -0.7992 -2.0278 50 1 3.0129 -0.3546 -1.5705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323046080.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:00 Heat of formation + Delta-G solvation = -26.541685 kcal Electronic energy + Delta-G solvation = -29399.264469 eV Core-core repulsion = 25427.492895 eV Total energy + Delta-G solvation = -3971.771573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.73879 -38.85340 -38.35720 -37.02553 -35.67068 -34.08478 -33.63779 -31.69593 -31.39472 -29.57972 -28.88618 -26.47965 -25.51435 -24.01154 -22.68491 -22.25994 -22.01918 -20.48224 -19.98046 -19.40738 -18.94537 -18.36473 -17.25967 -16.59103 -16.19431 -15.90383 -15.55839 -15.08098 -15.03375 -14.89511 -14.59304 -14.15699 -13.72895 -13.56761 -13.37861 -13.19572 -13.03033 -12.92106 -12.48740 -12.40467 -12.22579 -12.10173 -11.86180 -11.82459 -11.71083 -11.52897 -11.49815 -11.31153 -11.28961 -11.18244 -10.91206 -10.61980 -10.46232 -10.32195 -9.99694 -9.74011 -9.59391 -9.10075 -8.92637 -8.62521 -8.24167 -8.18471 -6.33153 -3.84674 1.96427 2.72793 3.00255 3.04526 3.11338 3.13156 3.71617 3.80220 3.97509 4.08239 4.30024 4.41780 4.59570 4.73328 4.79207 4.82286 4.87197 4.94754 5.05930 5.12941 5.17012 5.19851 5.20996 5.30141 5.38143 5.48694 5.51714 5.55857 5.56276 5.59432 5.74571 5.77036 5.78928 5.80268 5.85400 5.89649 6.00499 6.03440 6.08181 6.16387 6.23980 6.26524 6.53584 6.62386 6.99646 7.48080 7.55967 7.61172 8.12329 8.31355 8.57511 8.92923 9.40250 9.80327 10.80007 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.002678 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.041670 B =10452.824034 C =11953.228471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.057 4.057 3 C 0.534 3.466 4 O -0.546 6.546 5 N -0.700 5.700 6 C 0.179 3.821 7 H 0.087 0.913 8 C 0.052 3.948 9 N -0.665 5.665 10 C 0.048 3.952 11 C 0.449 3.551 12 O -0.563 6.563 13 N -0.591 5.591 14 C -0.305 4.305 15 H 0.119 0.881 16 C 0.041 3.959 17 N -0.881 5.881 18 Si 0.880 3.120 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.168 4.168 23 C -0.172 4.172 24 C -0.180 4.180 25 C -0.154 4.154 26 C -0.155 4.155 27 C -0.103 4.103 28 C -0.106 4.106 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.405 0.595 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.352 0.648 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.119 0.881 45 H 0.127 0.873 46 H 0.126 0.874 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.762 -9.947 3.374 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.060 4.060 3 C 0.321 3.679 4 O -0.425 6.425 5 N -0.350 5.350 6 C 0.074 3.926 7 H 0.105 0.895 8 C -0.078 4.078 9 N -0.298 5.298 10 C -0.085 4.085 11 C 0.235 3.765 12 O -0.445 6.445 13 N -0.230 5.230 14 C -0.434 4.434 15 H 0.137 0.863 16 C -0.162 4.162 17 N -0.521 5.521 18 Si 0.707 3.293 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.195 1.195 22 C -0.188 4.188 23 C -0.210 4.210 24 C -0.217 4.217 25 C -0.172 4.172 26 C -0.173 4.173 27 C -0.140 4.140 28 C -0.144 4.144 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.240 0.760 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.172 0.828 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.137 0.863 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.089 0.911 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 22.722 -10.659 2.441 25.216 hybrid contribution -0.055 1.817 1.547 2.387 sum 22.667 -8.842 3.988 24.655 Atomic orbital electron populations 1.21752 0.90925 1.02712 1.03610 1.20679 0.97588 0.92033 0.95670 1.20315 0.79492 0.86865 0.81218 1.90585 1.38016 1.77414 1.36459 1.45769 1.51510 1.11575 1.26116 1.20465 0.89959 0.82198 0.99972 0.89537 1.22241 0.88549 0.97747 0.99287 1.60058 1.04098 1.57515 1.08127 1.21714 0.92599 0.95283 0.98895 1.19694 0.85504 0.84600 0.86695 1.90573 1.84251 1.40199 1.29450 1.42210 1.08456 1.41407 1.30951 1.19428 0.81534 1.26457 1.15943 0.86295 1.25044 0.95044 0.97944 0.98151 1.69626 0.99469 1.41811 1.41208 0.86666 0.78503 0.81529 0.82643 1.19678 1.20174 1.19496 1.22636 0.90674 1.06935 0.98576 1.22912 1.00645 0.95747 1.01677 1.23257 1.00319 0.94010 1.04072 1.23048 1.00213 0.96153 0.97822 1.23287 0.99537 0.97300 0.97216 1.21411 1.01874 0.97686 0.92999 1.22482 1.02598 0.93534 0.95747 0.91327 0.91672 0.91447 0.76014 0.90457 0.93758 0.82814 0.89488 0.93730 0.79721 0.91604 0.87891 0.88757 0.89106 0.89734 0.86295 0.85555 0.85642 0.91050 0.90499 0.90449 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 8.38 37.16 0.31 -1.15 16 2 C -0.06 -0.60 0.73 -155.75 -0.11 -0.72 16 3 C 0.53 6.67 5.88 -10.98 -0.06 6.61 16 4 O -0.55 -8.30 12.53 5.55 0.07 -8.23 16 5 N -0.70 -7.72 4.64 -53.80 -0.25 -7.97 16 6 C 0.18 1.94 2.51 -67.93 -0.17 1.77 16 7 H 0.09 1.12 7.33 -51.93 -0.38 0.74 16 8 C 0.05 0.54 5.22 -3.82 -0.02 0.52 16 9 N -0.67 -9.39 5.85 -115.05 -0.67 -10.07 16 10 C 0.05 0.74 6.17 -4.97 -0.03 0.71 16 11 C 0.45 9.86 7.82 -10.98 -0.09 9.77 16 12 O -0.56 -14.71 15.78 5.55 0.09 -14.62 16 13 N -0.59 -13.76 5.09 -10.96 -0.06 -13.82 16 14 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 15 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 16 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 17 N -0.88 -25.60 13.96 55.50 0.77 -24.82 16 18 Si 0.88 19.13 27.74 -169.99 -4.71 14.41 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.27 -5.30 6.52 56.52 0.37 -4.94 16 22 C -0.17 -1.61 5.36 -90.62 -0.49 -2.09 16 23 C -0.17 -1.63 10.18 -26.73 -0.27 -1.90 16 24 C -0.18 -1.88 9.73 -26.73 -0.26 -2.14 16 25 C -0.15 -1.40 9.34 -35.70 -0.33 -1.73 16 26 C -0.16 -1.28 10.78 -35.69 -0.38 -1.67 16 27 C -0.10 -0.84 6.81 -26.83 -0.18 -1.03 16 28 C -0.11 -1.09 6.00 -25.00 -0.15 -1.24 16 29 H 0.07 0.78 7.63 -51.93 -0.40 0.38 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.40 4.16 8.05 -40.82 -0.33 3.83 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.35 5.54 8.43 -39.29 -0.33 5.21 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.37 7.55 5.76 -40.82 -0.24 7.31 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.10 0.87 8.11 -51.93 -0.42 0.45 16 41 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 44 H 0.12 1.54 5.02 -51.93 -0.26 1.28 16 45 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 46 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.08 0.77 7.90 -51.93 -0.41 0.36 16 50 H 0.09 1.02 7.03 -51.93 -0.37 0.65 16 LS Contribution 403.42 15.07 6.08 6.08 Total: -1.00 -32.63 403.42 -9.35 -41.98 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: -8.18 Total: 19.00 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.49 Total: -1.94 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.20 Total: -56.68 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.16 Total: -22.85 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.63 -9.35 -41.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323046080.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.442 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds