Wall clock time and date at job start Tue Mar 31 2020 18:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 110.34515 * 2 1 4 4 O 1.21287 * 120.00269 * 239.30036 * 3 2 1 5 5 N 1.34778 * 119.99804 * 59.30329 * 3 2 1 6 6 C 1.46501 * 120.00088 * 180.02562 * 5 3 2 7 7 H 1.09004 * 109.47213 * 34.99475 * 6 5 3 8 8 C 1.53002 * 109.47136 * 154.99824 * 6 5 3 9 9 N 1.46899 * 109.47024 * 304.99973 * 8 6 5 10 10 C 1.46899 * 110.99729 * 180.02562 * 9 8 6 11 11 C 1.50711 * 109.46797 * 179.97438 * 10 9 8 12 12 O 1.21289 * 119.99873 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99436 * 179.97438 * 11 10 9 14 14 C 1.37106 * 119.99519 * 180.02562 * 13 11 10 15 15 H 1.07997 * 119.99836 * 359.97438 * 14 13 11 16 16 C 1.38952 * 119.99742 * 179.97438 * 14 13 11 17 17 N 1.31415 * 119.99418 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00097 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.46954 * 90.00046 * 18 16 14 20 20 H 1.48500 * 109.47386 * 209.99654 * 18 16 14 21 21 H 1.48494 * 109.47283 * 329.99923 * 18 16 14 22 22 C 1.53001 * 109.46836 * 274.99635 * 6 5 3 23 23 C 1.53004 * 117.49622 * 128.62381 * 22 6 5 24 24 C 1.52996 * 117.49735 * 60.00336 * 22 6 5 25 25 C 1.51102 * 110.39125 * 122.29144 * 2 1 3 26 26 C 1.30521 * 111.10797 * 102.37234 * 25 2 1 27 27 C 1.51105 * 111.10139 * 0.02562 * 26 25 2 28 28 C 1.54634 * 104.72740 * 16.43836 * 27 26 25 29 29 H 1.09002 * 109.47153 * 299.16240 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.16431 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.16412 * 1 2 3 32 32 H 0.96996 * 119.99782 * 359.97438 * 5 3 2 33 33 H 1.08996 * 109.47180 * 65.00023 * 8 6 5 34 34 H 1.08999 * 109.46985 * 184.99870 * 8 6 5 35 35 H 1.00909 * 110.99828 * 303.95306 * 9 8 6 36 36 H 1.08999 * 109.46839 * 299.99422 * 10 9 8 37 37 H 1.09001 * 109.47489 * 60.00331 * 10 9 8 38 38 H 0.96996 * 120.00419 * 359.97438 * 13 11 10 39 39 H 0.97001 * 119.99231 * 179.97438 * 17 16 14 40 40 H 1.08998 * 115.55085 * 274.32871 * 22 6 5 41 41 H 1.08999 * 117.49956 * 359.97438 * 23 22 6 42 42 H 1.08992 * 117.49999 * 145.02224 * 23 22 6 43 43 H 1.09009 * 117.49897 * 214.97719 * 24 22 6 44 44 H 1.09004 * 117.50359 * 359.97438 * 24 22 6 45 45 H 1.08004 * 124.44272 * 282.35564 * 25 2 1 46 46 H 1.07991 * 124.45382 * 180.02562 * 26 25 2 47 47 H 1.09007 * 110.38467 * 135.24767 * 27 26 25 48 48 H 1.08998 * 110.38791 * 257.50894 * 27 26 25 49 49 H 1.08992 * 111.04002 * 217.33201 * 28 27 26 50 50 H 1.08996 * 111.03907 * 93.39406 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7676 1.7952 -0.9032 5 7 1.7295 2.2520 1.0037 6 6 2.2384 3.6258 1.0035 7 1 2.2921 3.9932 -0.0214 8 6 1.2983 4.5180 1.8166 9 7 -0.0676 4.3992 1.2891 10 6 -0.9999 5.2446 2.0469 11 6 -2.3876 5.0972 1.4778 12 8 -2.5807 4.3608 0.5336 13 7 -3.4138 5.7837 2.0181 14 6 -4.6763 5.6492 1.5007 15 1 -4.8483 4.9935 0.6600 16 6 -5.7345 6.3565 2.0581 17 7 -6.9445 6.2280 1.5618 18 14 -5.4368 7.4912 3.5117 19 1 -5.1114 8.8533 3.0179 20 1 -6.6590 7.5487 4.3533 21 1 -4.3035 6.9736 4.3197 22 6 3.6346 3.6525 1.6287 23 6 4.7489 4.3425 0.8393 24 6 4.7258 2.8171 0.9563 25 6 2.0565 -0.7566 1.1973 26 6 2.4648 -1.9489 0.8575 27 6 2.2793 -2.1859 -0.6233 28 6 2.0696 -0.7765 -1.2238 29 1 -0.3633 0.5008 0.8974 30 1 -0.3633 -1.0276 -0.0150 31 1 -0.3634 0.5268 -0.8824 32 1 1.1585 1.9464 1.7258 33 1 1.3131 4.2052 2.8606 34 1 1.6273 5.5546 1.7432 35 1 -0.0959 4.6219 0.3053 36 1 -1.0011 4.9371 3.0926 37 1 -0.6867 6.2861 1.9746 38 1 -3.2594 6.3723 2.7734 39 1 -7.6833 6.7215 1.9511 40 1 3.6616 3.7351 2.7152 41 1 4.4875 4.7769 -0.1256 42 1 5.5094 4.8792 1.4064 43 1 5.4711 2.3503 1.6004 44 1 4.4490 2.2481 0.0687 45 1 2.0906 -0.3625 2.2023 46 1 2.8806 -2.6711 1.5443 47 1 3.1691 -2.6510 -1.0477 48 1 1.4038 -2.8105 -0.8011 49 1 1.3341 -0.7992 -2.0278 50 1 3.0129 -0.3546 -1.5705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323046080.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:58 Heat of formation + Delta-G solvation = -50.368496 kcal Electronic energy + Delta-G solvation = -29400.297677 eV Core-core repulsion = 25427.492895 eV Total energy + Delta-G solvation = -3972.804781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.63652 -40.29725 -39.49010 -37.95226 -36.75918 -35.90456 -34.77681 -33.72970 -32.26094 -30.56181 -29.71685 -27.95013 -26.41044 -25.61389 -23.57885 -23.09764 -22.89838 -21.44996 -21.16517 -20.75582 -20.25246 -19.72976 -18.18183 -17.70589 -17.46857 -17.10944 -16.67564 -16.52509 -16.02874 -15.87591 -15.70242 -15.48121 -14.98393 -14.78174 -14.66439 -14.36514 -14.25913 -14.15589 -13.84527 -13.48612 -13.36154 -13.11474 -12.98673 -12.80121 -12.77977 -12.58011 -12.40908 -12.33023 -12.31572 -12.13540 -12.10580 -11.97289 -11.73315 -11.50050 -11.25185 -11.12185 -10.66642 -10.41770 -10.23768 -9.85888 -9.82952 -9.34265 -8.40530 -6.01394 1.27237 1.30776 1.36480 1.45469 1.78019 1.98362 2.23873 2.24683 2.70031 3.04138 3.16397 3.35684 3.50765 3.66088 3.74622 3.92507 4.02999 4.06381 4.14619 4.17263 4.25096 4.33626 4.34794 4.41940 4.47364 4.50572 4.60789 4.64250 4.71509 4.77807 4.79295 4.82789 4.93599 4.97481 4.99155 5.04983 5.19990 5.22730 5.28034 5.31837 5.40179 5.53128 5.55619 5.63540 5.89987 5.96801 6.03285 6.29066 6.60835 6.69062 6.89677 7.37713 7.41524 7.98856 8.77328 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.002678 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.041670 B =10452.824034 C =11953.228471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.055 4.055 3 C 0.528 3.472 4 O -0.580 6.580 5 N -0.693 5.693 6 C 0.180 3.820 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.680 5.680 10 C 0.063 3.937 11 C 0.448 3.552 12 O -0.614 6.614 13 N -0.592 5.592 14 C -0.327 4.327 15 H 0.053 0.947 16 C -0.017 4.017 17 N -0.937 5.937 18 Si 0.966 3.034 19 H -0.259 1.259 20 H -0.277 1.277 21 H -0.228 1.228 22 C -0.157 4.157 23 C -0.167 4.167 24 C -0.190 4.190 25 C -0.168 4.168 26 C -0.146 4.146 27 C -0.101 4.101 28 C -0.111 4.111 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.410 0.590 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.339 0.661 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.127 0.873 41 H 0.081 0.919 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.140 0.860 46 H 0.150 0.850 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.072 0.928 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.182 -9.113 7.374 27.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.058 4.058 3 C 0.315 3.685 4 O -0.461 6.461 5 N -0.342 5.342 6 C 0.075 3.925 7 H 0.076 0.924 8 C -0.069 4.069 9 N -0.312 5.312 10 C -0.069 4.069 11 C 0.236 3.764 12 O -0.498 6.498 13 N -0.234 5.234 14 C -0.457 4.457 15 H 0.071 0.929 16 C -0.215 4.215 17 N -0.577 5.577 18 Si 0.786 3.214 19 H -0.183 1.183 20 H -0.202 1.202 21 H -0.151 1.151 22 C -0.177 4.177 23 C -0.205 4.205 24 C -0.227 4.227 25 C -0.186 4.186 26 C -0.164 4.164 27 C -0.138 4.138 28 C -0.148 4.148 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.246 0.754 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.157 0.843 36 H 0.138 0.862 37 H 0.095 0.905 38 H 0.226 0.774 39 H 0.088 0.912 40 H 0.145 0.855 41 H 0.099 0.901 42 H 0.130 0.870 43 H 0.115 0.885 44 H 0.109 0.891 45 H 0.158 0.842 46 H 0.167 0.833 47 H 0.101 0.899 48 H 0.106 0.894 49 H 0.090 0.910 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 25.173 -9.829 6.473 27.788 hybrid contribution -0.794 1.461 0.120 1.667 sum 24.378 -8.368 6.592 26.604 Atomic orbital electron populations 1.21696 0.91505 1.03101 1.02207 1.20665 0.96978 0.91254 0.96896 1.20698 0.79072 0.87723 0.80971 1.90573 1.39609 1.78151 1.37739 1.45747 1.51106 1.11574 1.25789 1.20456 0.91238 0.82002 0.98849 0.92359 1.22292 0.86080 0.98601 0.99959 1.60060 1.06035 1.57694 1.07363 1.21644 0.87965 0.97522 0.99769 1.21051 0.87698 0.82337 0.85328 1.90559 1.85577 1.41959 1.31693 1.42031 1.07048 1.42485 1.31796 1.18992 0.84503 1.26742 1.15438 0.92860 1.26142 0.93943 0.99543 1.01908 1.69816 1.00989 1.43397 1.43529 0.85348 0.79776 0.78629 0.77648 1.18322 1.20182 1.15098 1.22621 0.89350 1.06173 0.99537 1.22957 1.01061 0.95029 1.01432 1.23158 1.01439 0.94554 1.03585 1.23077 1.01416 0.96420 0.97650 1.23542 0.98237 0.97310 0.97274 1.21433 1.02903 0.96261 0.93169 1.22468 1.01469 0.95105 0.95805 0.91710 0.90338 0.93800 0.75376 0.88025 0.92009 0.84343 0.86191 0.90534 0.77446 0.91201 0.85531 0.90057 0.86994 0.88453 0.89134 0.84250 0.83271 0.89900 0.89438 0.90959 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.38 71.98 0.60 -2.31 16 2 C -0.05 -1.18 0.73 -52.98 -0.04 -1.22 16 3 C 0.53 13.63 5.88 87.66 0.52 14.14 16 4 O -0.58 -18.73 12.53 -3.05 -0.04 -18.77 16 5 N -0.69 -14.99 4.64 -442.51 -2.05 -17.04 16 6 C 0.18 3.67 2.51 44.99 0.11 3.79 16 7 H 0.06 1.54 7.33 -2.39 -0.02 1.52 16 8 C 0.06 1.06 5.22 86.30 0.45 1.51 16 9 N -0.68 -17.94 5.85 -517.92 -3.03 -20.97 16 10 C 0.06 1.73 6.17 85.56 0.53 2.26 16 11 C 0.45 19.43 7.82 87.66 0.69 20.11 16 12 O -0.61 -33.31 15.78 -3.06 -0.05 -33.36 16 13 N -0.59 -27.11 5.09 -306.97 -1.56 -28.67 16 14 C -0.33 -19.00 10.16 84.04 0.85 -18.15 16 15 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 16 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 17 N -0.94 -56.39 13.96 21.66 0.30 -56.08 16 18 Si 0.97 38.09 27.74 68.60 1.90 40.00 16 19 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 20 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 22 C -0.16 -2.65 5.36 -10.79 -0.06 -2.70 16 23 C -0.17 -2.89 10.18 30.60 0.31 -2.58 16 24 C -0.19 -3.80 9.73 30.59 0.30 -3.51 16 25 C -0.17 -2.83 9.34 26.27 0.25 -2.58 16 26 C -0.15 -2.11 10.78 26.27 0.28 -1.83 16 27 C -0.10 -1.55 6.81 30.53 0.21 -1.34 16 28 C -0.11 -2.35 6.00 31.71 0.19 -2.16 16 29 H 0.06 1.50 7.63 -2.39 -0.02 1.48 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.41 7.93 8.05 -92.71 -0.75 7.19 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 35 H 0.34 10.60 8.43 -89.69 -0.76 9.85 16 36 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.39 14.59 5.76 -92.71 -0.53 14.06 16 39 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.13 1.60 8.11 -2.39 -0.02 1.58 16 41 H 0.08 1.61 8.05 -2.39 -0.02 1.59 16 42 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.09 2.42 5.02 -2.39 -0.01 2.41 16 45 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 46 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 47 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 48 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.07 1.55 7.90 -2.39 -0.02 1.53 16 50 H 0.07 1.72 7.03 -2.39 -0.02 1.70 16 Total: -1.00 -78.79 403.42 0.00 -78.79 By element: Atomic # 1 Polarization: 54.29 SS G_CDS: -1.13 Total: 53.16 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 5.66 Total: 2.96 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -6.34 Total: -122.78 kcal Atomic # 8 Polarization: -52.05 SS G_CDS: -0.09 Total: -52.13 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 1.90 Total: 40.00 kcal Total: -78.79 0.00 -78.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323046080.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.424 kcal (2) G-P(sol) polarization free energy of solvation -78.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds