Wall clock time and date at job start Tue Mar 31 2020 18:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34498 * 125.56948 * 2 1 4 4 C 1.46682 * 106.32937 * 180.14670 * 3 2 1 5 5 C 1.47264 * 126.94180 * 179.82556 * 4 3 2 6 6 O 1.21625 * 120.00362 * 140.75764 * 5 4 3 7 7 N 1.34774 * 120.00026 * 320.76439 * 5 4 3 8 8 C 1.46931 * 120.62855 * 354.08665 * 7 5 4 9 9 C 1.53195 * 108.77593 * 233.88083 * 8 7 5 10 10 C 1.53033 * 109.31730 * 305.37043 * 9 8 7 11 11 C 1.53041 * 109.54087 * 61.35720 * 10 9 8 12 12 C 1.53000 * 109.50001 * 178.68135 * 11 10 9 13 13 O 1.42896 * 109.47201 * 184.83901 * 12 11 10 14 14 N 1.46505 * 109.51955 * 58.60626 * 11 10 9 15 15 C 1.36938 * 120.00019 * 180.14725 * 14 11 10 16 16 H 1.07996 * 119.99916 * 359.97438 * 15 14 11 17 17 C 1.38811 * 119.99995 * 180.02562 * 15 14 11 18 18 N 1.31619 * 120.00204 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46741 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47234 * 119.99341 * 19 17 15 22 22 H 1.48502 * 109.46949 * 240.00329 * 19 17 15 23 23 C 1.46930 * 120.63477 * 174.37061 * 7 5 4 24 24 C 1.36770 * 106.11874 * 359.56741 * 4 3 2 25 25 C 1.50699 * 125.80149 * 180.28096 * 24 4 3 26 26 N 1.34661 * 108.39490 * 0.26011 * 24 4 3 27 27 C 1.46497 * 124.84689 * 179.97438 * 26 24 4 28 28 H 1.08998 * 109.46507 * 270.33665 * 1 2 3 29 29 H 1.09001 * 109.47477 * 30.33650 * 1 2 3 30 30 H 1.08999 * 109.46758 * 150.33863 * 1 2 3 31 31 H 1.08001 * 126.83036 * 359.97188 * 3 2 1 32 32 H 1.09000 * 109.58735 * 353.67298 * 8 7 5 33 33 H 1.09005 * 109.58412 * 114.10053 * 8 7 5 34 34 H 1.09002 * 109.49851 * 185.41059 * 9 8 7 35 35 H 1.09000 * 109.51751 * 65.33354 * 9 8 7 36 36 H 1.09008 * 109.46023 * 301.34239 * 10 9 8 37 37 H 1.08999 * 109.46324 * 181.38766 * 10 9 8 38 38 H 1.08993 * 109.47277 * 304.85031 * 12 11 10 39 39 H 1.09007 * 109.46376 * 64.84206 * 12 11 10 40 40 H 0.96704 * 114.00144 * 180.02562 * 13 12 11 41 41 H 0.96994 * 120.00301 * 0.14702 * 14 11 10 42 42 H 0.97001 * 120.00139 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.58385 * 245.90495 * 23 7 5 44 44 H 1.09001 * 109.58417 * 6.18428 * 23 7 5 45 45 H 1.09001 * 109.47094 * 90.00009 * 25 24 4 46 46 H 1.09004 * 109.46916 * 209.99901 * 25 24 4 47 47 H 1.08994 * 109.47552 * 330.00097 * 25 24 4 48 48 H 1.09005 * 109.46719 * 90.00491 * 27 26 24 49 49 H 1.09003 * 109.46913 * 209.99983 * 27 26 24 50 50 H 1.08992 * 109.47535 * 329.99913 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0940 0.0000 4 6 3.6743 0.6107 -0.0036 5 6 4.8977 1.4303 -0.0085 6 8 5.8591 1.0920 0.6553 7 7 4.9522 2.5554 -0.7485 8 6 3.8508 2.9096 -1.6543 9 6 4.4212 3.1417 -3.0570 10 6 5.5359 4.1877 -2.9836 11 6 6.6616 3.6738 -2.0832 12 6 7.7900 4.7060 -2.0367 13 8 8.8874 4.1789 -1.2885 14 7 7.1767 2.4101 -2.6164 15 6 8.1931 1.7581 -1.9707 16 1 8.6153 2.1757 -1.0686 17 6 8.6815 0.5611 -2.4762 18 7 8.1673 0.0525 -3.5758 19 14 10.0686 -0.3279 -1.5957 20 1 10.4679 0.4463 -0.3930 21 1 9.6087 -1.6788 -1.1851 22 1 11.2321 -0.4573 -2.5093 23 6 6.1167 3.4479 -0.6695 24 6 3.5998 -0.7550 0.0044 25 6 4.7723 -1.7017 0.0104 26 7 2.3008 -1.1097 0.0066 27 6 1.8100 -2.4901 0.0142 28 1 -0.3632 0.0060 1.0277 29 1 -0.3634 0.8869 -0.5190 30 1 -0.3633 -0.8930 -0.5086 31 1 1.9628 2.1235 -0.0004 32 1 3.1263 2.0958 -1.6844 33 1 3.3663 3.8202 -1.3017 34 1 3.6304 3.4983 -3.7169 35 1 4.8249 2.2066 -3.4452 36 1 5.1370 5.1152 -2.5726 37 1 5.9268 4.3727 -3.9841 38 1 8.1173 4.9325 -3.0514 39 1 7.4292 5.6173 -1.5595 40 1 9.6405 4.7813 -1.2173 41 1 6.7978 2.0353 -3.4268 42 1 8.5084 -0.7841 -3.9289 43 1 5.8169 4.4023 -0.2366 44 1 6.8862 2.9903 -0.0478 45 1 5.0546 -1.9239 1.0395 46 1 4.4959 -2.6255 -0.4981 47 1 5.6143 -1.2407 -0.5058 48 1 1.6884 -2.8267 1.0438 49 1 0.8497 -2.5370 -0.4993 50 1 2.5267 -3.1333 -0.4962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327602470.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:12 Heat of formation + Delta-G solvation = -10.829826 kcal Electronic energy + Delta-G solvation = -31623.299281 eV Core-core repulsion = 27652.209025 eV Total energy + Delta-G solvation = -3971.090256 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.27429 -39.33506 -37.32210 -35.54817 -33.69278 -32.76366 -32.47052 -31.92850 -30.85642 -29.01593 -28.50064 -26.93653 -25.26354 -25.10874 -23.98499 -23.34802 -21.59909 -21.05396 -19.67329 -18.46182 -17.57993 -17.14543 -16.55259 -16.05860 -15.73619 -15.47678 -15.27927 -14.71612 -14.18798 -14.09857 -13.91080 -13.61745 -13.42811 -13.28176 -13.11519 -13.00281 -12.91848 -12.68361 -12.45226 -12.31514 -12.28208 -12.06945 -11.91204 -11.83997 -11.62335 -11.42484 -11.17458 -11.00614 -10.64905 -10.61793 -10.45818 -10.25427 -10.00802 -9.57318 -9.38078 -9.02526 -8.85970 -8.66425 -8.25943 -7.82712 -7.65070 -6.66324 -5.44069 -2.68331 2.25974 2.63124 2.92441 3.65059 3.70909 3.74293 3.77464 4.14377 4.69666 4.77666 4.87293 4.93932 4.98322 5.03245 5.17061 5.29260 5.33927 5.38898 5.43385 5.45396 5.52963 5.60261 5.67136 5.73641 5.76377 5.85367 5.94758 5.97538 5.99041 6.00595 6.06638 6.13576 6.17568 6.23711 6.32591 6.35923 6.43279 6.55192 6.55944 6.78489 6.95119 7.01870 7.10094 7.30383 7.43666 7.46205 8.29968 8.30788 8.48658 8.74041 9.15639 9.87551 10.35689 10.71660 11.79975 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.005013 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.163554 B = 5584.380073 C = 7047.941725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.001 3.999 3 C -0.167 4.167 4 C -0.214 4.214 5 C 0.595 3.405 6 O -0.534 6.534 7 N -0.589 5.589 8 C 0.109 3.891 9 C -0.131 4.131 10 C -0.114 4.114 11 C 0.188 3.812 12 C 0.075 3.925 13 O -0.535 6.535 14 N -0.701 5.701 15 C -0.183 4.183 16 H 0.092 0.908 17 C -0.027 4.027 18 N -0.949 5.949 19 Si 0.900 3.100 20 H -0.281 1.281 21 H -0.299 1.299 22 H -0.301 1.301 23 C 0.112 3.888 24 C 0.096 3.904 25 C -0.089 4.089 26 N -0.445 5.445 27 C 0.068 3.932 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.142 0.858 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.037 0.963 39 H 0.022 0.978 40 H 0.350 0.650 41 H 0.381 0.619 42 H 0.246 0.754 43 H 0.041 0.959 44 H 0.102 0.898 45 H 0.075 0.925 46 H 0.059 0.941 47 H 0.097 0.903 48 H 0.071 0.929 49 H 0.082 0.918 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.301 3.599 4.273 18.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C -0.192 4.192 4 C -0.224 4.224 5 C 0.384 3.616 6 O -0.411 6.411 7 N -0.321 5.321 8 C -0.015 4.015 9 C -0.170 4.170 10 C -0.152 4.152 11 C 0.095 3.905 12 C -0.006 4.006 13 O -0.337 6.337 14 N -0.341 5.341 15 C -0.314 4.314 16 H 0.110 0.890 17 C -0.220 4.220 18 N -0.601 5.601 19 Si 0.733 3.267 20 H -0.206 1.206 21 H -0.226 1.226 22 H -0.229 1.229 23 C -0.013 4.013 24 C -0.019 4.019 25 C -0.146 4.146 26 N -0.123 5.123 27 C -0.074 4.074 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.160 0.840 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.041 0.959 40 H 0.194 0.806 41 H 0.215 0.785 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.120 0.880 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.116 0.884 48 H 0.090 0.910 49 H 0.100 0.900 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.194 2.504 4.809 18.028 hybrid contribution 0.968 -0.160 -0.105 0.987 sum -16.226 2.344 4.705 17.056 Atomic orbital electron populations 1.20265 0.88259 1.02880 1.02219 1.20098 0.93179 0.85704 1.11677 1.21718 0.90785 0.97238 1.09459 1.20202 0.93215 0.92191 1.16760 1.17224 0.85635 0.79582 0.79208 1.90762 1.36983 1.69686 1.43686 1.47510 1.19399 1.23434 1.41771 1.21799 0.89735 1.00475 0.89452 1.21867 0.97704 1.00788 0.96627 1.21618 0.95844 0.97795 0.99987 1.19954 0.90108 0.88228 0.92253 1.22758 0.88894 0.94988 0.93985 1.86981 1.26979 1.44275 1.75509 1.42404 1.41143 1.20622 1.29910 1.19575 1.06460 0.99948 1.05445 0.89046 1.24605 1.00589 0.98589 0.98173 1.69678 1.45707 1.21444 1.23306 0.86157 0.82171 0.79616 0.78744 1.20597 1.22647 1.22875 1.22060 0.88275 0.91453 0.99489 1.20211 0.84312 0.94140 1.03189 1.20450 0.94677 0.96436 1.03032 1.43335 1.05152 1.06057 1.57711 1.22010 1.01247 0.81003 1.03098 0.91440 0.90301 0.92098 0.84025 0.89100 0.92857 0.91844 0.90249 0.92176 0.91779 0.94515 0.95945 0.80557 0.78456 0.94465 0.94086 0.88014 0.90649 0.92242 0.88399 0.91045 0.89959 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.06 36.01 0.36 -0.29 16 2 C 0.00 0.01 6.85 -81.86 -0.56 -0.55 16 3 C -0.17 -2.45 8.58 -37.50 -0.32 -2.77 16 4 C -0.21 -3.98 5.32 -103.35 -0.55 -4.53 16 5 C 0.59 13.01 7.32 -12.59 -0.09 12.92 16 6 O -0.53 -13.81 15.74 5.26 0.08 -13.73 16 7 N -0.59 -11.53 2.89 -174.09 -0.50 -12.04 16 8 C 0.11 1.69 5.55 -3.71 -0.02 1.67 16 9 C -0.13 -2.06 5.91 -26.61 -0.16 -2.22 16 10 C -0.11 -1.83 4.76 -26.69 -0.13 -1.96 16 11 C 0.19 3.74 0.68 -131.70 -0.09 3.65 16 12 C 0.07 1.36 6.09 37.16 0.23 1.59 16 13 O -0.54 -10.78 10.05 -35.23 -0.35 -11.13 16 14 N -0.70 -17.59 4.75 -47.12 -0.22 -17.81 16 15 C -0.18 -5.26 8.07 -15.06 -0.12 -5.38 16 16 H 0.09 2.73 5.27 -52.49 -0.28 2.45 16 17 C -0.03 -0.81 5.50 -17.43 -0.10 -0.91 16 18 N -0.95 -29.80 13.06 55.49 0.72 -29.08 16 19 Si 0.90 24.72 29.55 -169.99 -5.02 19.69 16 20 H -0.28 -7.66 7.11 56.52 0.40 -7.26 16 21 H -0.30 -8.28 7.11 56.52 0.40 -7.88 16 22 H -0.30 -8.23 7.11 56.52 0.40 -7.83 16 23 C 0.11 2.28 4.92 -3.71 -0.02 2.26 16 24 C 0.10 1.65 6.88 -81.88 -0.56 1.09 16 25 C -0.09 -1.53 9.50 36.01 0.34 -1.18 16 26 N -0.44 -5.99 3.09 -115.28 -0.36 -6.34 16 27 C 0.07 0.61 10.61 59.85 0.63 1.25 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.42 6.94 -51.93 -0.36 0.06 16 31 H 0.14 1.78 7.47 -52.49 -0.39 1.39 16 32 H 0.09 1.39 4.74 -51.93 -0.25 1.14 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.54 6.76 -51.93 -0.35 1.19 16 36 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.35 5.24 9.12 45.56 0.42 5.66 16 41 H 0.38 10.27 6.43 -40.82 -0.26 10.01 16 42 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.10 2.51 5.82 -51.93 -0.30 2.21 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.06 0.84 6.92 -51.93 -0.36 0.48 16 47 H 0.10 2.12 7.64 -51.93 -0.40 1.73 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.08 0.55 6.90 -51.93 -0.36 0.19 16 50 H 0.08 0.73 6.88 -51.93 -0.36 0.37 16 LS Contribution 385.81 15.07 5.81 5.81 Total: -1.00 -37.58 385.81 -8.02 -45.61 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -7.03 Total: 14.38 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -1.15 Total: 4.63 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -0.36 Total: -65.27 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.27 Total: -24.86 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.02 Total: 19.69 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.58 -8.02 -45.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327602470.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.779 kcal (2) G-P(sol) polarization free energy of solvation -37.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds