Wall clock time and date at job start Tue Mar 31 2020 18:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34498 * 125.56948 * 2 1 4 4 C 1.46682 * 106.32937 * 180.14670 * 3 2 1 5 5 C 1.47264 * 126.94180 * 179.82556 * 4 3 2 6 6 O 1.21625 * 120.00362 * 140.75764 * 5 4 3 7 7 N 1.34774 * 120.00026 * 320.76439 * 5 4 3 8 8 C 1.46931 * 120.62855 * 354.08665 * 7 5 4 9 9 C 1.53195 * 108.77593 * 233.88083 * 8 7 5 10 10 C 1.53033 * 109.31730 * 305.37043 * 9 8 7 11 11 C 1.53041 * 109.54087 * 61.35720 * 10 9 8 12 12 C 1.53000 * 109.50001 * 178.68135 * 11 10 9 13 13 O 1.42896 * 109.47201 * 184.83901 * 12 11 10 14 14 N 1.46505 * 109.51955 * 58.60626 * 11 10 9 15 15 C 1.36938 * 120.00019 * 180.14725 * 14 11 10 16 16 H 1.07996 * 119.99916 * 359.97438 * 15 14 11 17 17 C 1.38811 * 119.99995 * 180.02562 * 15 14 11 18 18 N 1.31619 * 120.00204 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46741 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47234 * 119.99341 * 19 17 15 22 22 H 1.48502 * 109.46949 * 240.00329 * 19 17 15 23 23 C 1.46930 * 120.63477 * 174.37061 * 7 5 4 24 24 C 1.36770 * 106.11874 * 359.56741 * 4 3 2 25 25 C 1.50699 * 125.80149 * 180.28096 * 24 4 3 26 26 N 1.34661 * 108.39490 * 0.26011 * 24 4 3 27 27 C 1.46497 * 124.84689 * 179.97438 * 26 24 4 28 28 H 1.08998 * 109.46507 * 270.33665 * 1 2 3 29 29 H 1.09001 * 109.47477 * 30.33650 * 1 2 3 30 30 H 1.08999 * 109.46758 * 150.33863 * 1 2 3 31 31 H 1.08001 * 126.83036 * 359.97188 * 3 2 1 32 32 H 1.09000 * 109.58735 * 353.67298 * 8 7 5 33 33 H 1.09005 * 109.58412 * 114.10053 * 8 7 5 34 34 H 1.09002 * 109.49851 * 185.41059 * 9 8 7 35 35 H 1.09000 * 109.51751 * 65.33354 * 9 8 7 36 36 H 1.09008 * 109.46023 * 301.34239 * 10 9 8 37 37 H 1.08999 * 109.46324 * 181.38766 * 10 9 8 38 38 H 1.08993 * 109.47277 * 304.85031 * 12 11 10 39 39 H 1.09007 * 109.46376 * 64.84206 * 12 11 10 40 40 H 0.96704 * 114.00144 * 180.02562 * 13 12 11 41 41 H 0.96994 * 120.00301 * 0.14702 * 14 11 10 42 42 H 0.97001 * 120.00139 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.58385 * 245.90495 * 23 7 5 44 44 H 1.09001 * 109.58417 * 6.18428 * 23 7 5 45 45 H 1.09001 * 109.47094 * 90.00009 * 25 24 4 46 46 H 1.09004 * 109.46916 * 209.99901 * 25 24 4 47 47 H 1.08994 * 109.47552 * 330.00097 * 25 24 4 48 48 H 1.09005 * 109.46719 * 90.00491 * 27 26 24 49 49 H 1.09003 * 109.46913 * 209.99983 * 27 26 24 50 50 H 1.08992 * 109.47535 * 329.99913 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0940 0.0000 4 6 3.6743 0.6107 -0.0036 5 6 4.8977 1.4303 -0.0085 6 8 5.8591 1.0920 0.6553 7 7 4.9522 2.5554 -0.7485 8 6 3.8508 2.9096 -1.6543 9 6 4.4212 3.1417 -3.0570 10 6 5.5359 4.1877 -2.9836 11 6 6.6616 3.6738 -2.0832 12 6 7.7900 4.7060 -2.0367 13 8 8.8874 4.1789 -1.2885 14 7 7.1767 2.4101 -2.6164 15 6 8.1931 1.7581 -1.9707 16 1 8.6153 2.1757 -1.0686 17 6 8.6815 0.5611 -2.4762 18 7 8.1673 0.0525 -3.5758 19 14 10.0686 -0.3279 -1.5957 20 1 10.4679 0.4463 -0.3930 21 1 9.6087 -1.6788 -1.1851 22 1 11.2321 -0.4573 -2.5093 23 6 6.1167 3.4479 -0.6695 24 6 3.5998 -0.7550 0.0044 25 6 4.7723 -1.7017 0.0104 26 7 2.3008 -1.1097 0.0066 27 6 1.8100 -2.4901 0.0142 28 1 -0.3632 0.0060 1.0277 29 1 -0.3634 0.8869 -0.5190 30 1 -0.3633 -0.8930 -0.5086 31 1 1.9628 2.1235 -0.0004 32 1 3.1263 2.0958 -1.6844 33 1 3.3663 3.8202 -1.3017 34 1 3.6304 3.4983 -3.7169 35 1 4.8249 2.2066 -3.4452 36 1 5.1370 5.1152 -2.5726 37 1 5.9268 4.3727 -3.9841 38 1 8.1173 4.9325 -3.0514 39 1 7.4292 5.6173 -1.5595 40 1 9.6405 4.7813 -1.2173 41 1 6.7978 2.0353 -3.4268 42 1 8.5084 -0.7841 -3.9289 43 1 5.8169 4.4023 -0.2366 44 1 6.8862 2.9903 -0.0478 45 1 5.0546 -1.9239 1.0395 46 1 4.4959 -2.6255 -0.4981 47 1 5.6143 -1.2407 -0.5058 48 1 1.6884 -2.8267 1.0438 49 1 0.8497 -2.5370 -0.4993 50 1 2.5267 -3.1333 -0.4962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327602470.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:11 Heat of formation + Delta-G solvation = -39.501694 kcal Electronic energy + Delta-G solvation = -31624.542586 eV Core-core repulsion = 27652.209025 eV Total energy + Delta-G solvation = -3972.333562 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.41085 -40.84323 -38.95579 -37.07804 -35.50996 -34.11975 -33.61263 -33.39518 -32.46666 -30.44311 -30.03581 -28.13011 -26.55771 -26.38738 -25.56639 -25.15004 -22.96912 -22.35095 -20.88332 -19.98753 -19.27309 -18.75370 -17.85552 -17.75472 -17.04038 -16.82095 -16.54275 -16.28300 -15.95304 -15.63175 -15.48318 -15.02140 -14.93336 -14.53837 -14.36916 -14.23593 -14.13092 -13.91760 -13.74034 -13.58992 -13.48442 -13.38915 -13.16203 -13.10745 -12.94076 -12.91503 -12.68827 -12.63267 -12.46117 -12.34545 -12.02147 -11.86547 -11.66867 -11.31400 -11.26851 -10.86815 -10.61547 -10.53858 -9.48524 -9.30355 -8.87874 -8.72579 -7.76814 -4.96710 0.95517 1.38638 1.42157 1.52088 1.52724 1.89232 2.29055 2.66528 2.67556 3.43018 3.72326 3.79840 3.87873 3.93173 3.95041 4.03448 4.10065 4.18854 4.24464 4.32607 4.36414 4.42183 4.54379 4.56810 4.58250 4.64035 4.66826 4.73271 4.76098 4.81561 4.85624 4.89793 4.97807 4.98765 5.00540 5.06694 5.10410 5.19330 5.22413 5.34458 5.49466 5.55423 5.86131 5.92663 5.96996 6.18869 6.45229 6.48182 6.78527 7.19514 7.55743 7.56843 8.25549 8.48299 9.48257 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.005013 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.163554 B = 5584.380073 C = 7047.941725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.019 3.981 3 C -0.180 4.180 4 C -0.248 4.248 5 C 0.580 3.420 6 O -0.597 6.597 7 N -0.590 5.590 8 C 0.106 3.894 9 C -0.127 4.127 10 C -0.108 4.108 11 C 0.174 3.826 12 C 0.075 3.925 13 O -0.571 6.571 14 N -0.708 5.708 15 C -0.152 4.152 16 H 0.079 0.921 17 C -0.092 4.092 18 N -0.980 5.980 19 Si 0.943 3.057 20 H -0.282 1.282 21 H -0.308 1.308 22 H -0.296 1.296 23 C 0.115 3.885 24 C 0.070 3.930 25 C -0.078 4.078 26 N -0.439 5.439 27 C 0.058 3.942 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.163 0.837 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.032 0.968 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.038 0.962 39 H 0.066 0.934 40 H 0.373 0.627 41 H 0.369 0.631 42 H 0.238 0.762 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.040 0.960 48 H 0.088 0.912 49 H 0.113 0.887 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.400 5.506 4.171 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 C -0.204 4.204 4 C -0.258 4.258 5 C 0.370 3.630 6 O -0.479 6.479 7 N -0.321 5.321 8 C -0.015 4.015 9 C -0.165 4.165 10 C -0.145 4.145 11 C 0.083 3.917 12 C -0.005 4.005 13 O -0.377 6.377 14 N -0.346 5.346 15 C -0.285 4.285 16 H 0.097 0.903 17 C -0.281 4.281 18 N -0.636 5.636 19 Si 0.778 3.222 20 H -0.207 1.207 21 H -0.237 1.237 22 H -0.224 1.224 23 C -0.010 4.010 24 C -0.046 4.046 25 C -0.136 4.136 26 N -0.115 5.115 27 C -0.082 4.082 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.180 0.820 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.051 0.949 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.220 0.780 41 H 0.202 0.798 42 H 0.047 0.953 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.106 0.894 47 H 0.059 0.941 48 H 0.107 0.893 49 H 0.132 0.868 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.329 4.483 4.707 22.297 hybrid contribution 2.137 -0.651 0.005 2.234 sum -19.192 3.832 4.712 20.130 Atomic orbital electron populations 1.20443 0.84334 1.04764 1.03773 1.20865 0.95249 0.84639 1.08199 1.21904 0.88704 0.99022 1.10761 1.20235 0.93773 0.92816 1.19022 1.17938 0.86174 0.80169 0.78679 1.90705 1.39417 1.71320 1.46453 1.47692 1.20056 1.22628 1.41675 1.22102 0.88544 1.02351 0.88542 1.21839 0.98709 0.98728 0.97248 1.21628 0.94296 0.99231 0.99370 1.20444 0.92189 0.86497 0.92599 1.22721 0.87832 0.95507 0.94429 1.86883 1.28546 1.46364 1.75893 1.42515 1.40357 1.22460 1.29276 1.19636 1.05784 0.99210 1.03903 0.90330 1.25127 1.03342 1.00063 0.99583 1.69784 1.47330 1.21694 1.24776 0.85425 0.80618 0.78294 0.77910 1.20705 1.23663 1.22357 1.21925 0.87711 0.92416 0.98909 1.20099 0.85913 0.93814 1.04793 1.20226 0.93417 0.97357 1.02588 1.43599 1.03714 1.08178 1.56047 1.22389 1.02552 0.78526 1.04778 0.89881 0.88578 0.90106 0.81994 0.88811 0.88728 0.87649 0.94924 0.87924 0.91497 0.94365 0.91612 0.77997 0.79828 0.95324 0.90563 0.93270 0.90610 0.89447 0.94122 0.89317 0.86828 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.06 71.24 0.72 -0.15 16 2 C 0.02 0.43 6.85 40.99 0.28 0.71 16 3 C -0.18 -4.95 8.58 23.62 0.20 -4.74 16 4 C -0.25 -9.47 5.32 -19.04 -0.10 -9.57 16 5 C 0.58 26.75 7.32 86.62 0.63 27.38 16 6 O -0.60 -33.59 15.74 -4.11 -0.06 -33.66 16 7 N -0.59 -23.25 2.89 -822.94 -2.38 -25.63 16 8 C 0.11 3.06 5.55 86.36 0.48 3.53 16 9 C -0.13 -3.70 5.91 30.67 0.18 -3.51 16 10 C -0.11 -3.11 4.76 30.62 0.15 -2.96 16 11 C 0.17 6.78 0.68 3.68 0.00 6.78 16 12 C 0.08 2.60 6.09 71.98 0.44 3.04 16 13 O -0.57 -23.03 10.05 -148.98 -1.50 -24.52 16 14 N -0.71 -36.67 4.75 -303.00 -1.44 -38.11 16 15 C -0.15 -9.18 8.07 84.03 0.68 -8.50 16 16 H 0.08 4.94 5.27 -2.91 -0.02 4.93 16 17 C -0.09 -5.87 5.50 84.86 0.47 -5.40 16 18 N -0.98 -64.72 13.06 21.65 0.28 -64.44 16 19 Si 0.94 53.60 29.55 68.60 2.03 55.62 16 20 H -0.28 -15.79 7.11 99.48 0.71 -15.08 16 21 H -0.31 -17.74 7.11 99.48 0.71 -17.04 16 22 H -0.30 -16.34 7.11 99.48 0.71 -15.63 16 23 C 0.12 4.69 4.92 86.36 0.42 5.11 16 24 C 0.07 2.48 6.88 41.78 0.29 2.77 16 25 C -0.08 -2.92 9.50 71.24 0.68 -2.24 16 26 N -0.44 -11.04 3.09 -518.62 -1.60 -12.64 16 27 C 0.06 0.86 10.61 127.77 1.36 2.22 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.65 6.94 -2.39 -0.02 0.64 16 31 H 0.16 3.58 7.47 -2.91 -0.02 3.55 16 32 H 0.09 2.69 4.74 -2.39 -0.01 2.67 16 33 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.03 1.26 6.76 -2.39 -0.02 1.25 16 36 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.37 10.96 9.12 -74.05 -0.68 10.29 16 41 H 0.37 20.73 6.43 -92.71 -0.60 20.13 16 42 H 0.24 15.47 8.31 -92.71 -0.77 14.70 16 43 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 44 H 0.05 2.54 5.82 -2.39 -0.01 2.53 16 45 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.09 2.59 6.92 -2.38 -0.02 2.58 16 47 H 0.04 1.96 7.64 -2.39 -0.02 1.94 16 48 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 49 H 0.11 1.01 6.90 -2.39 -0.02 1.00 16 50 H 0.08 1.29 6.88 -2.39 -0.02 1.28 16 Total: -1.00 -92.05 385.81 1.90 -90.15 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: -0.30 Total: 38.77 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 6.87 Total: 14.46 kcal Atomic # 7 Polarization: -135.69 SS G_CDS: -5.13 Total: -140.82 kcal Atomic # 8 Polarization: -56.62 SS G_CDS: -1.56 Total: -58.18 kcal Atomic # 14 Polarization: 53.60 SS G_CDS: 2.03 Total: 55.62 kcal Total: -92.05 1.90 -90.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327602470.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.645 kcal (2) G-P(sol) polarization free energy of solvation -92.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds