Wall clock time and date at job start Tue Mar 31 2020 19:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46904 * 109.46242 * 2 1 4 4 C 1.46902 * 110.99741 * 59.99890 * 3 2 1 5 5 C 1.50698 * 109.46761 * 179.97438 * 4 3 2 6 6 O 1.21297 * 120.00251 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00058 * 180.27331 * 5 4 3 8 8 C 1.37100 * 120.00058 * 179.72348 * 7 5 4 9 9 H 1.07995 * 119.99739 * 0.02562 * 8 7 5 10 10 C 1.38953 * 119.99646 * 180.02562 * 8 7 5 11 11 N 1.31408 * 119.99938 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99618 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47440 * 89.99795 * 12 10 8 14 14 H 1.48497 * 109.46847 * 210.00138 * 12 10 8 15 15 H 1.48498 * 109.46986 * 329.99704 * 12 10 8 16 16 C 1.53043 * 109.45908 * 119.97407 * 2 1 3 17 17 C 1.53189 * 109.31271 * 58.62172 * 16 2 1 18 18 N 1.46931 * 108.76222 * 54.66017 * 17 16 2 19 19 C 1.34776 * 120.63000 * 126.35981 * 18 17 16 20 20 O 1.21620 * 119.99887 * 174.90613 * 19 18 17 21 21 C 1.47098 * 120.00296 * 354.90330 * 19 18 17 22 22 C 1.32992 * 120.00235 * 185.20506 * 21 19 18 23 23 C 1.51399 * 136.31598 * 359.63518 * 22 21 19 24 24 C 1.53377 * 87.51969 * 206.05074 * 23 22 21 25 25 C 1.51411 * 136.31653 * 179.97438 * 22 21 19 26 26 C 1.46921 * 118.73901 * 306.38013 * 18 17 16 27 27 C 1.53036 * 109.46095 * 240.02477 * 2 1 3 28 28 H 1.09006 * 109.46771 * 59.99982 * 1 2 3 29 29 H 1.08999 * 109.47374 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46998 * 300.00188 * 1 2 3 31 31 H 1.00896 * 110.99435 * 296.04602 * 3 2 1 32 32 H 1.08996 * 109.47067 * 60.00373 * 4 3 2 33 33 H 1.09001 * 109.47270 * 299.99723 * 4 3 2 34 34 H 0.96993 * 119.99439 * 359.72730 * 7 5 4 35 35 H 0.97001 * 119.99558 * 179.97438 * 11 10 8 36 36 H 1.08997 * 109.49736 * 178.59281 * 16 2 1 37 37 H 1.09002 * 109.49525 * 298.68590 * 16 2 1 38 38 H 1.09001 * 109.60519 * 294.87260 * 17 16 2 39 39 H 1.09001 * 109.58682 * 174.43200 * 17 16 2 40 40 H 1.08005 * 119.99958 * 5.21186 * 21 19 18 41 41 H 1.09004 * 113.56418 * 320.63759 * 23 22 21 42 42 H 1.09006 * 113.56388 * 91.37097 * 23 22 21 43 43 H 1.09000 * 113.96988 * 220.28618 * 24 23 22 44 44 H 1.09004 * 113.70941 * 88.80927 * 24 23 22 45 45 H 1.09001 * 113.55743 * 268.63085 * 25 22 21 46 46 H 1.08999 * 113.55891 * 39.36464 * 25 22 21 47 47 H 1.09006 * 109.58849 * 293.82157 * 26 18 17 48 48 H 1.08999 * 109.58907 * 173.39903 * 26 18 17 49 49 H 1.09002 * 109.49734 * 61.31328 * 27 2 1 50 50 H 1.08999 * 109.50087 * 181.37324 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.5483 2.1099 1.1877 5 6 2.0697 3.5234 1.1532 6 8 2.7650 3.8910 0.2298 7 7 1.7676 4.3777 2.1509 8 6 2.2466 5.6619 2.1224 9 1 2.8657 5.9891 1.3002 10 6 1.9355 6.5425 3.1513 11 7 1.1818 6.1444 4.1514 12 14 2.5876 8.2925 3.1120 13 1 1.6175 9.1666 2.4049 14 1 2.7742 8.7825 4.5013 15 1 3.8898 8.3196 2.3986 16 6 2.0398 -0.7209 1.2500 17 6 1.4989 -2.1541 1.2644 18 7 1.8619 -2.8089 0.0002 19 6 2.5155 -3.9876 0.0004 20 8 2.7285 -4.5649 -1.0487 21 6 2.9711 -4.5758 1.2693 22 6 3.7053 -5.6847 1.2625 23 6 4.2634 -6.6219 0.2126 24 6 4.2475 -7.7217 1.2815 25 6 4.3509 -6.5768 2.3017 26 6 1.4992 -2.1543 -1.2641 27 6 2.0399 -0.7209 -1.2499 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7499 1.8637 -0.8463 32 1 1.9118 1.6108 2.0859 33 1 0.4584 2.1244 1.1959 34 1 1.2113 4.0838 2.8891 35 1 0.9650 6.7590 4.8698 36 1 3.1295 -0.7432 1.2381 37 1 1.6960 -0.1935 2.1398 38 1 0.4139 -2.1344 1.3673 39 1 1.9373 -2.7018 2.0986 40 1 2.7094 -4.1072 2.2065 41 1 3.5771 -6.8093 -0.6133 42 1 5.2656 -6.3541 -0.1222 43 1 5.1216 -8.3726 1.2602 44 1 3.3078 -8.2719 1.3304 45 1 5.3770 -6.2965 2.5395 46 1 3.7363 -6.7271 3.1892 47 1 0.4142 -2.1346 -1.3674 48 1 1.9378 -2.7020 -2.0982 49 1 1.6960 -0.1936 -2.1398 50 1 3.1296 -0.7427 -1.2384 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327981258.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:48 Heat of formation + Delta-G solvation = -21.208580 kcal Electronic energy + Delta-G solvation = -28918.543449 eV Core-core repulsion = 24947.003136 eV Total energy + Delta-G solvation = -3971.540313 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.68657 -39.33217 -38.43510 -37.72327 -35.27317 -33.89895 -32.31268 -31.28214 -30.98590 -30.61044 -27.77724 -26.79870 -26.11363 -24.84395 -23.88988 -23.80471 -22.52984 -20.51456 -19.21778 -18.63789 -17.92208 -17.82521 -17.56853 -16.29825 -16.11129 -15.82238 -15.40724 -15.26314 -14.90273 -14.81373 -14.64045 -14.35702 -14.12879 -13.94545 -13.61889 -13.43853 -13.10776 -12.80478 -12.51030 -12.34502 -12.28164 -12.18714 -11.98516 -11.92807 -11.78150 -11.55064 -11.36446 -11.29869 -11.20512 -11.03257 -10.86109 -10.71375 -10.40154 -10.35644 -10.21567 -9.75331 -9.51174 -9.51007 -8.76018 -8.45233 -8.02897 -7.95456 -6.42266 -3.82867 1.10782 2.78881 3.12444 3.17374 3.26036 3.32189 3.90309 3.93534 4.06253 4.12374 4.27917 4.36810 4.49379 4.56778 4.74672 4.81376 4.88587 4.99474 5.10782 5.13199 5.16737 5.18800 5.26020 5.26479 5.29167 5.37710 5.43037 5.45314 5.50759 5.60019 5.62655 5.68446 5.75634 5.81450 5.83153 5.87288 5.95102 6.01312 6.03228 6.14889 6.27380 6.28608 6.33549 6.43197 7.26025 7.26299 7.54864 7.67686 8.05882 8.06311 8.61186 9.17790 9.54200 10.05936 10.75497 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020953 B = 0.001996 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.977630 B =14022.309135 C =14690.342246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.115 3.885 3 N -0.657 5.657 4 C 0.047 3.953 5 C 0.440 3.560 6 O -0.583 6.583 7 N -0.564 5.564 8 C -0.299 4.299 9 H 0.103 0.897 10 C 0.022 3.978 11 N -0.902 5.902 12 Si 0.930 3.070 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.270 1.270 16 C -0.125 4.125 17 C 0.105 3.895 18 N -0.606 5.606 19 C 0.554 3.446 20 O -0.547 6.547 21 C -0.203 4.203 22 C -0.061 4.061 23 C -0.107 4.107 24 C -0.143 4.143 25 C -0.109 4.109 26 C 0.115 3.885 27 C -0.120 4.120 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.350 0.650 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.392 0.608 35 H 0.271 0.729 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.136 0.864 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.078 0.922 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.075 0.925 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 -25.262 -2.243 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.023 3.977 3 N -0.289 5.289 4 C -0.086 4.086 5 C 0.226 3.774 6 O -0.467 6.467 7 N -0.201 5.201 8 C -0.428 4.428 9 H 0.120 0.880 10 C -0.180 4.180 11 N -0.544 5.544 12 Si 0.757 3.243 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.194 1.194 16 C -0.164 4.164 17 C -0.018 4.018 18 N -0.339 5.339 19 C 0.345 3.655 20 O -0.427 6.427 21 C -0.223 4.223 22 C -0.063 4.063 23 C -0.144 4.144 24 C -0.180 4.180 25 C -0.146 4.146 26 C -0.008 4.008 27 C -0.158 4.158 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.170 0.830 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.225 0.775 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.154 0.846 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.120 0.880 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.110 0.890 49 H 0.094 0.906 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.288 -25.336 -2.983 25.512 hybrid contribution -1.169 1.156 0.557 1.736 sum -0.880 -24.179 -2.426 24.317 Atomic orbital electron populations 1.22715 0.97336 1.02290 1.02509 1.20856 0.91918 0.89689 0.95218 1.60246 1.62927 1.00573 1.05140 1.21751 0.97678 0.94255 0.94906 1.19860 0.85938 0.86623 0.84982 1.90526 1.41739 1.78155 1.36308 1.41860 1.46107 1.11072 1.21085 1.19703 1.28999 0.86470 1.07661 0.87951 1.25256 0.97021 1.00385 0.95319 1.69610 1.37232 1.36851 1.10678 0.85860 0.79353 0.81754 0.77344 1.20444 1.20931 1.19415 1.22027 1.02295 0.93953 0.98092 1.21935 1.00387 0.93627 0.85838 1.47970 1.57347 1.21068 1.07509 1.18396 0.77321 0.80425 0.89316 1.90750 1.57378 1.60996 1.33556 1.21700 1.05805 0.97122 0.97696 1.23500 0.92209 0.91019 0.99580 1.22237 1.01898 0.93125 0.97136 1.22726 1.02740 0.96012 0.96508 1.22372 1.01278 0.94119 0.96838 1.21630 0.99848 0.92784 0.86537 1.21912 1.02243 0.94185 0.97508 0.92420 0.91929 0.91890 0.83004 0.89514 0.93577 0.77519 0.91905 0.90340 0.90203 0.90967 0.89332 0.84642 0.89443 0.88453 0.90393 0.89762 0.88025 0.90339 0.91380 0.88952 0.90604 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.94 7.47 37.16 0.28 -1.66 16 2 C 0.11 1.33 0.71 -131.56 -0.09 1.24 16 3 N -0.66 -10.21 5.71 -101.18 -0.58 -10.79 16 4 C 0.05 0.79 5.38 -4.98 -0.03 0.76 16 5 C 0.44 10.28 7.82 -10.98 -0.09 10.20 16 6 O -0.58 -15.81 15.78 5.54 0.09 -15.72 16 7 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 8 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 9 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 10 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 11 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 12 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 C -0.13 -1.33 4.71 -26.61 -0.13 -1.45 16 17 C 0.11 0.90 5.88 -3.71 -0.02 0.88 16 18 N -0.61 -6.35 2.97 -174.16 -0.52 -6.87 16 19 C 0.55 6.65 7.63 -12.67 -0.10 6.56 16 20 O -0.55 -8.16 14.56 5.26 0.08 -8.09 16 21 C -0.20 -1.93 9.35 -37.81 -0.35 -2.29 16 22 C -0.06 -0.54 6.93 -100.48 -0.70 -1.24 16 23 C -0.11 -0.91 7.04 -27.56 -0.19 -1.11 16 24 C -0.14 -0.87 8.17 -26.19 -0.21 -1.08 16 25 C -0.11 -0.67 7.96 -27.39 -0.22 -0.89 16 26 C 0.11 1.19 5.95 -3.71 -0.02 1.17 16 27 C -0.12 -1.32 5.16 -26.61 -0.14 -1.46 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.56 4.98 -51.93 -0.26 0.30 16 30 H 0.06 0.67 6.40 -51.93 -0.33 0.34 16 31 H 0.35 5.72 8.42 -39.29 -0.33 5.39 16 32 H 0.09 1.36 6.27 -51.93 -0.33 1.03 16 33 H 0.05 0.71 6.30 -51.93 -0.33 0.38 16 34 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 35 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.83 6.33 -51.93 -0.33 0.50 16 38 H 0.07 0.55 6.69 -51.93 -0.35 0.20 16 39 H 0.09 0.61 5.30 -51.93 -0.28 0.34 16 40 H 0.14 0.98 5.87 -52.48 -0.31 0.67 16 41 H 0.09 0.90 7.41 -51.93 -0.38 0.51 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.63 6.69 -51.93 -0.35 0.28 16 48 H 0.09 1.06 7.03 -51.93 -0.37 0.69 16 49 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 387.93 15.07 5.85 5.85 Total: -1.00 -33.00 387.93 -9.26 -42.26 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -7.57 Total: 13.59 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -2.25 Total: 1.65 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.43 Total: -55.54 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.16 Total: -23.81 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.00 -9.26 -42.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327981258.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.053 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds