Wall clock time and date at job start Tue Mar 31 2020 19:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46904 * 109.46242 * 2 1 4 4 C 1.46902 * 110.99741 * 59.99890 * 3 2 1 5 5 C 1.50698 * 109.46761 * 179.97438 * 4 3 2 6 6 O 1.21297 * 120.00251 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00058 * 180.27331 * 5 4 3 8 8 C 1.37100 * 120.00058 * 179.72348 * 7 5 4 9 9 H 1.07995 * 119.99739 * 0.02562 * 8 7 5 10 10 C 1.38953 * 119.99646 * 180.02562 * 8 7 5 11 11 N 1.31408 * 119.99938 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99618 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47440 * 89.99795 * 12 10 8 14 14 H 1.48497 * 109.46847 * 210.00138 * 12 10 8 15 15 H 1.48498 * 109.46986 * 329.99704 * 12 10 8 16 16 C 1.53043 * 109.45908 * 119.97407 * 2 1 3 17 17 C 1.53189 * 109.31271 * 58.62172 * 16 2 1 18 18 N 1.46931 * 108.76222 * 54.66017 * 17 16 2 19 19 C 1.34776 * 120.63000 * 126.35981 * 18 17 16 20 20 O 1.21620 * 119.99887 * 174.90613 * 19 18 17 21 21 C 1.47098 * 120.00296 * 354.90330 * 19 18 17 22 22 C 1.32992 * 120.00235 * 185.20506 * 21 19 18 23 23 C 1.51399 * 136.31598 * 359.63518 * 22 21 19 24 24 C 1.53377 * 87.51969 * 206.05074 * 23 22 21 25 25 C 1.51411 * 136.31653 * 179.97438 * 22 21 19 26 26 C 1.46921 * 118.73901 * 306.38013 * 18 17 16 27 27 C 1.53036 * 109.46095 * 240.02477 * 2 1 3 28 28 H 1.09006 * 109.46771 * 59.99982 * 1 2 3 29 29 H 1.08999 * 109.47374 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46998 * 300.00188 * 1 2 3 31 31 H 1.00896 * 110.99435 * 296.04602 * 3 2 1 32 32 H 1.08996 * 109.47067 * 60.00373 * 4 3 2 33 33 H 1.09001 * 109.47270 * 299.99723 * 4 3 2 34 34 H 0.96993 * 119.99439 * 359.72730 * 7 5 4 35 35 H 0.97001 * 119.99558 * 179.97438 * 11 10 8 36 36 H 1.08997 * 109.49736 * 178.59281 * 16 2 1 37 37 H 1.09002 * 109.49525 * 298.68590 * 16 2 1 38 38 H 1.09001 * 109.60519 * 294.87260 * 17 16 2 39 39 H 1.09001 * 109.58682 * 174.43200 * 17 16 2 40 40 H 1.08005 * 119.99958 * 5.21186 * 21 19 18 41 41 H 1.09004 * 113.56418 * 320.63759 * 23 22 21 42 42 H 1.09006 * 113.56388 * 91.37097 * 23 22 21 43 43 H 1.09000 * 113.96988 * 220.28618 * 24 23 22 44 44 H 1.09004 * 113.70941 * 88.80927 * 24 23 22 45 45 H 1.09001 * 113.55743 * 268.63085 * 25 22 21 46 46 H 1.08999 * 113.55891 * 39.36464 * 25 22 21 47 47 H 1.09006 * 109.58849 * 293.82157 * 26 18 17 48 48 H 1.08999 * 109.58907 * 173.39903 * 26 18 17 49 49 H 1.09002 * 109.49734 * 61.31328 * 27 2 1 50 50 H 1.08999 * 109.50087 * 181.37324 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.5483 2.1099 1.1877 5 6 2.0697 3.5234 1.1532 6 8 2.7650 3.8910 0.2298 7 7 1.7676 4.3777 2.1509 8 6 2.2466 5.6619 2.1224 9 1 2.8657 5.9891 1.3002 10 6 1.9355 6.5425 3.1513 11 7 1.1818 6.1444 4.1514 12 14 2.5876 8.2925 3.1120 13 1 1.6175 9.1666 2.4049 14 1 2.7742 8.7825 4.5013 15 1 3.8898 8.3196 2.3986 16 6 2.0398 -0.7209 1.2500 17 6 1.4989 -2.1541 1.2644 18 7 1.8619 -2.8089 0.0002 19 6 2.5155 -3.9876 0.0004 20 8 2.7285 -4.5649 -1.0487 21 6 2.9711 -4.5758 1.2693 22 6 3.7053 -5.6847 1.2625 23 6 4.2634 -6.6219 0.2126 24 6 4.2475 -7.7217 1.2815 25 6 4.3509 -6.5768 2.3017 26 6 1.4992 -2.1543 -1.2641 27 6 2.0399 -0.7209 -1.2499 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7499 1.8637 -0.8463 32 1 1.9118 1.6108 2.0859 33 1 0.4584 2.1244 1.1959 34 1 1.2113 4.0838 2.8891 35 1 0.9650 6.7590 4.8698 36 1 3.1295 -0.7432 1.2381 37 1 1.6960 -0.1935 2.1398 38 1 0.4139 -2.1344 1.3673 39 1 1.9373 -2.7018 2.0986 40 1 2.7094 -4.1072 2.2065 41 1 3.5771 -6.8093 -0.6133 42 1 5.2656 -6.3541 -0.1222 43 1 5.1216 -8.3726 1.2602 44 1 3.3078 -8.2719 1.3304 45 1 5.3770 -6.2965 2.5395 46 1 3.7363 -6.7271 3.1892 47 1 0.4142 -2.1346 -1.3674 48 1 1.9378 -2.7020 -2.0982 49 1 1.6960 -0.1936 -2.1398 50 1 3.1296 -0.7427 -1.2384 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327981258.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:47 Heat of formation + Delta-G solvation = -43.765678 kcal Electronic energy + Delta-G solvation = -28919.521598 eV Core-core repulsion = 24947.003136 eV Total energy + Delta-G solvation = -3972.518462 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.57235 -40.36691 -39.69980 -38.86118 -36.41610 -35.83093 -33.38462 -33.10565 -32.05266 -31.37440 -28.70747 -28.21720 -26.68202 -26.32448 -24.99231 -24.64399 -23.36919 -21.38239 -20.95153 -19.89093 -19.46144 -18.60862 -18.51639 -17.74165 -16.98169 -16.76037 -16.47833 -16.37448 -16.14874 -15.98817 -15.70649 -15.60187 -15.53777 -15.10956 -14.79679 -14.53502 -14.26214 -13.91572 -13.52009 -13.37572 -13.33926 -13.24870 -12.97261 -12.90810 -12.83508 -12.75837 -12.56395 -12.42535 -12.32676 -12.13369 -12.11536 -11.91593 -11.63763 -11.50163 -11.45888 -11.26870 -10.58653 -10.33226 -10.22259 -10.00502 -9.59723 -9.24589 -8.46234 -5.94557 0.37762 1.37954 1.41928 1.54404 1.99001 2.06674 2.27997 2.30668 2.90583 3.21069 3.28189 3.49522 3.55360 3.68002 3.76318 3.83411 4.02456 4.08412 4.15888 4.26509 4.28777 4.30095 4.36269 4.46495 4.56363 4.56567 4.63056 4.63829 4.69584 4.74553 4.81331 4.86340 4.90297 4.91858 4.96408 5.00986 5.05325 5.15441 5.22387 5.27875 5.35742 5.41567 5.45221 5.53386 5.70757 5.92931 6.16514 6.43425 6.44107 6.61452 7.13711 7.18868 7.57610 8.13509 8.71020 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020953 B = 0.001996 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.977630 B =14022.309135 C =14690.342246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.116 3.884 3 N -0.674 5.674 4 C 0.065 3.935 5 C 0.436 3.564 6 O -0.626 6.626 7 N -0.573 5.573 8 C -0.334 4.334 9 H 0.077 0.923 10 C -0.012 4.012 11 N -0.918 5.918 12 Si 0.991 3.009 13 H -0.271 1.271 14 H -0.270 1.270 15 H -0.275 1.275 16 C -0.124 4.124 17 C 0.108 3.892 18 N -0.605 5.605 19 C 0.544 3.456 20 O -0.588 6.588 21 C -0.217 4.217 22 C -0.069 4.069 23 C -0.120 4.120 24 C -0.133 4.133 25 C -0.098 4.098 26 C 0.119 3.881 27 C -0.113 4.113 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.343 0.657 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.397 0.603 35 H 0.278 0.722 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.161 0.839 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.115 0.885 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.076 0.924 49 H 0.080 0.920 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -26.299 -0.304 26.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.025 3.975 3 N -0.305 5.305 4 C -0.067 4.067 5 C 0.224 3.776 6 O -0.512 6.512 7 N -0.210 5.210 8 C -0.464 4.464 9 H 0.095 0.905 10 C -0.212 4.212 11 N -0.559 5.559 12 Si 0.815 3.185 13 H -0.196 1.196 14 H -0.195 1.195 15 H -0.200 1.200 16 C -0.162 4.162 17 C -0.014 4.014 18 N -0.337 5.337 19 C 0.337 3.663 20 O -0.471 6.471 21 C -0.237 4.237 22 C -0.071 4.071 23 C -0.157 4.157 24 C -0.170 4.170 25 C -0.135 4.135 26 C -0.004 4.004 27 C -0.152 4.152 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.162 0.838 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.231 0.769 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.128 0.872 40 H 0.179 0.821 41 H 0.080 0.920 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.133 0.867 46 H 0.113 0.887 47 H 0.105 0.895 48 H 0.095 0.905 49 H 0.099 0.901 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.600 -26.385 -1.008 26.411 hybrid contribution -0.867 1.431 -0.123 1.678 sum -1.467 -24.954 -1.131 25.023 Atomic orbital electron populations 1.22643 0.95576 1.03506 1.02507 1.20952 0.93205 0.87415 0.95939 1.60249 1.63942 1.02126 1.04229 1.21587 0.98712 0.90103 0.96329 1.20989 0.84511 0.88661 0.83457 1.90495 1.43450 1.79567 1.37734 1.41916 1.46500 1.10731 1.21850 1.19644 1.30427 0.88357 1.07941 0.90529 1.26006 0.96835 1.03779 0.94587 1.69662 1.37261 1.38138 1.10863 0.84953 0.78473 0.77205 0.77859 1.19641 1.19466 1.19990 1.22015 1.01187 0.95309 0.97694 1.22082 1.01599 0.92200 0.85531 1.48072 1.56736 1.20718 1.08177 1.18922 0.76938 0.80624 0.89806 1.90728 1.59008 1.62218 1.35118 1.21814 1.06746 0.97767 0.97348 1.23947 0.91469 0.90711 1.01010 1.22333 1.01306 0.94899 0.97145 1.22716 1.03657 0.95702 0.94934 1.22404 1.01890 0.92570 0.96606 1.21572 1.00664 0.91768 0.86399 1.21828 1.00775 0.94811 0.97749 0.92568 0.90065 0.91762 0.83834 0.87629 0.91204 0.76920 0.91294 0.92259 0.89395 0.88981 0.87206 0.82147 0.91957 0.88450 0.88747 0.89512 0.86710 0.88707 0.89534 0.90514 0.90123 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 7.47 71.98 0.54 -2.73 16 2 C 0.12 2.52 0.71 3.55 0.00 2.52 16 3 N -0.67 -20.57 5.71 -474.01 -2.71 -23.28 16 4 C 0.06 2.12 5.38 85.56 0.46 2.58 16 5 C 0.44 20.54 7.82 87.66 0.69 21.23 16 6 O -0.63 -34.86 15.78 -3.08 -0.05 -34.91 16 7 N -0.57 -29.06 5.29 -306.98 -1.62 -30.68 16 8 C -0.33 -18.95 9.68 84.04 0.81 -18.13 16 9 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 10 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 11 N -0.92 -48.93 13.05 21.66 0.28 -48.64 16 12 Si 0.99 42.82 29.55 68.60 2.03 44.84 16 13 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 14 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 16 C -0.12 -2.38 4.71 30.67 0.14 -2.23 16 17 C 0.11 1.56 5.88 86.36 0.51 2.07 16 18 N -0.61 -11.98 2.97 -823.16 -2.45 -14.43 16 19 C 0.54 12.90 7.63 86.57 0.66 13.57 16 20 O -0.59 -18.16 14.56 -4.10 -0.06 -18.22 16 21 C -0.22 -3.83 9.35 23.43 0.22 -3.61 16 22 C -0.07 -1.15 6.93 -17.17 -0.12 -1.27 16 23 C -0.12 -2.04 7.04 30.06 0.21 -1.83 16 24 C -0.13 -1.38 8.17 30.95 0.25 -1.13 16 25 C -0.10 -0.95 7.96 30.17 0.24 -0.71 16 26 C 0.12 2.38 5.95 86.36 0.51 2.90 16 27 C -0.11 -2.47 5.16 30.67 0.16 -2.31 16 28 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.08 1.16 4.98 -2.39 -0.01 1.15 16 30 H 0.06 1.15 6.40 -2.39 -0.02 1.14 16 31 H 0.34 11.24 8.42 -89.70 -0.76 10.48 16 32 H 0.11 3.09 6.27 -2.39 -0.01 3.07 16 33 H 0.07 1.99 6.30 -2.39 -0.02 1.97 16 34 H 0.40 18.94 7.90 -92.71 -0.73 18.20 16 35 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.57 6.33 -2.39 -0.02 1.55 16 38 H 0.09 1.04 6.69 -2.39 -0.02 1.02 16 39 H 0.11 1.15 5.30 -2.39 -0.01 1.14 16 40 H 0.16 1.86 5.87 -2.91 -0.02 1.85 16 41 H 0.06 1.36 7.41 -2.38 -0.02 1.34 16 42 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.09 1.43 6.69 -2.38 -0.02 1.41 16 48 H 0.08 1.81 7.03 -2.39 -0.02 1.79 16 49 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -73.68 387.93 0.68 -73.00 By element: Atomic # 1 Polarization: 42.08 SS G_CDS: -0.50 Total: 41.58 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 5.76 Total: 10.74 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -6.49 Total: -117.04 kcal Atomic # 8 Polarization: -53.02 SS G_CDS: -0.11 Total: -53.13 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -73.68 0.68 -73.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327981258.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.238 kcal (2) G-P(sol) polarization free energy of solvation -73.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds