Wall clock time and date at job start Tue Mar 31 2020 19:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38350 * 119.41116 * 2 1 4 4 C 1.38334 * 119.46124 * 180.28097 * 3 2 1 5 5 C 1.50703 * 120.82675 * 179.72959 * 4 3 2 6 6 C 1.39984 * 118.34814 * 359.45398 * 4 3 2 7 7 C 1.47523 * 120.59669 * 180.25398 * 6 4 3 8 8 O 1.21591 * 120.00257 * 90.00664 * 7 6 4 9 9 N 1.34775 * 120.00034 * 269.99854 * 7 6 4 10 10 C 1.46496 * 119.99966 * 0.02562 * 9 7 6 11 11 C 1.46501 * 120.00016 * 179.97438 * 9 7 6 12 12 C 1.53004 * 109.46938 * 90.00392 * 11 9 7 13 13 C 1.53001 * 109.47252 * 299.99806 * 12 11 9 14 14 C 1.52999 * 109.46989 * 60.00077 * 12 11 9 15 15 C 1.53005 * 109.46990 * 180.02562 * 12 11 9 16 16 N 1.46494 * 109.46937 * 180.02562 * 15 12 11 17 17 C 1.36942 * 119.99795 * 179.97438 * 16 15 12 18 18 H 1.07995 * 120.00080 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99680 * 179.97438 * 17 16 15 20 20 N 1.31619 * 119.99691 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00093 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47175 * 89.99834 * 21 19 17 23 23 H 1.48494 * 109.47192 * 209.99623 * 21 19 17 24 24 H 1.48500 * 109.47419 * 329.99847 * 21 19 17 25 25 C 1.40282 * 118.80833 * 0.27877 * 6 4 3 26 26 O 1.35425 * 119.80439 * 179.97438 * 25 6 4 27 27 N 1.31888 * 119.40545 * 179.72669 * 2 1 3 28 28 H 1.08997 * 109.46613 * 270.27684 * 1 2 3 29 29 H 1.09003 * 109.47050 * 30.27360 * 1 2 3 30 30 H 1.09004 * 109.47331 * 150.27775 * 1 2 3 31 31 H 1.08008 * 120.26825 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.47152 * 269.71867 * 5 4 3 33 33 H 1.09001 * 109.46980 * 149.71967 * 5 4 3 34 34 H 1.09004 * 109.47113 * 29.71948 * 5 4 3 35 35 H 1.09000 * 109.47315 * 89.99962 * 10 9 7 36 36 H 1.09007 * 109.47187 * 209.99681 * 10 9 7 37 37 H 1.09000 * 109.47474 * 329.99517 * 10 9 7 38 38 H 1.09000 * 109.47217 * 210.00163 * 11 9 7 39 39 H 1.08995 * 109.47506 * 330.00578 * 11 9 7 40 40 H 1.08998 * 109.46688 * 59.99805 * 13 12 11 41 41 H 1.08994 * 109.47216 * 179.97438 * 13 12 11 42 42 H 1.08997 * 109.47133 * 300.00581 * 13 12 11 43 43 H 1.09000 * 109.47390 * 60.00091 * 14 12 11 44 44 H 1.09009 * 109.46684 * 180.02562 * 14 12 11 45 45 H 1.08999 * 109.47052 * 299.99454 * 14 12 11 46 46 H 1.09000 * 109.47093 * 299.99727 * 15 12 11 47 47 H 1.08997 * 109.46965 * 59.99682 * 15 12 11 48 48 H 0.96998 * 120.00254 * 359.97438 * 16 15 12 49 49 H 0.96997 * 119.99908 * 179.97438 * 20 19 17 50 50 H 0.96704 * 113.99539 * 89.99363 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5698 1.2064 -0.0059 5 6 4.3409 2.5012 -0.0122 6 6 4.2356 -0.0249 0.0000 7 6 5.7097 -0.0815 -0.0002 8 8 6.3176 -0.0996 1.0526 9 7 6.3827 -0.1132 -1.1675 10 6 5.6503 -0.0910 -2.4361 11 6 7.8466 -0.1688 -1.1678 12 6 8.3015 -1.6296 -1.1603 13 6 7.7650 -2.3245 0.0928 14 6 7.7640 -2.3374 -2.4057 15 6 9.8304 -1.6877 -1.1600 16 7 10.2659 -3.0864 -1.1535 17 6 11.6018 -3.3876 -1.1525 18 1 12.3343 -2.5939 -1.1569 19 6 12.0145 -4.7130 -1.1458 20 7 13.2984 -5.0024 -1.1454 21 14 10.7476 -6.0856 -1.1389 22 1 10.4118 -6.4564 -2.5371 23 1 11.3029 -7.2681 -0.4330 24 1 9.5208 -5.6235 -0.4411 25 6 3.4758 -1.2042 0.0057 26 8 4.0991 -2.4065 0.0109 27 7 2.1546 -1.1490 0.0055 28 1 -0.3632 0.0050 1.0277 29 1 -0.3633 0.8875 -0.5181 30 1 -0.3634 -0.8925 -0.5095 31 1 1.6412 2.1375 0.0004 32 1 4.5267 2.8084 -1.0414 33 1 5.2915 2.3604 0.5023 34 1 3.7621 3.2713 0.4980 35 1 5.5084 0.9414 -2.7557 36 1 6.2188 -0.6308 -3.1934 37 1 4.6787 -0.5670 -2.3032 38 1 8.2289 0.3262 -2.0605 39 1 8.2296 0.3354 -0.2806 40 1 6.6758 -2.2831 0.0929 41 1 8.0886 -3.3653 0.0978 42 1 8.1478 -1.8202 0.9800 43 1 8.1463 -1.8424 -3.2985 44 1 8.0877 -3.3783 -2.4002 45 1 6.6748 -2.2961 -2.4055 46 1 10.2130 -1.1926 -2.0525 47 1 10.2129 -1.1835 -0.2725 48 1 9.6081 -3.7992 -1.1499 49 1 13.5868 -5.9285 -1.1404 50 1 4.2805 -2.7515 0.8959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329320867.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:59 Heat of formation + Delta-G solvation = -26.250028 kcal Electronic energy + Delta-G solvation = -30525.568593 eV Core-core repulsion = 26553.809667 eV Total energy + Delta-G solvation = -3971.758926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.41163 -39.79484 -37.65194 -37.43173 -35.23821 -34.55994 -33.06017 -32.12716 -30.67190 -28.99729 -28.05440 -27.90942 -26.78209 -25.99550 -25.41631 -23.55928 -22.31287 -21.71827 -19.90516 -18.75361 -18.61261 -17.74989 -17.54414 -17.44225 -16.44829 -15.87468 -15.52328 -15.04436 -14.59724 -14.39613 -14.21004 -14.05204 -13.78842 -13.65721 -13.43813 -13.39172 -13.23395 -13.09140 -12.91297 -12.81943 -12.63393 -12.38024 -12.29374 -12.23184 -12.17257 -11.96159 -11.34528 -11.28289 -11.21926 -10.84673 -10.75453 -10.50883 -10.34210 -10.25487 -9.96297 -9.91772 -9.62356 -9.52306 -9.15182 -8.83737 -8.66546 -7.15056 -5.71643 -3.05589 0.40788 0.70184 2.36953 2.82487 2.96851 3.34677 3.41130 3.44549 3.48761 4.02029 4.10116 4.26057 4.58053 4.64140 4.76396 4.86432 4.93180 4.96144 5.01386 5.06822 5.08895 5.13555 5.17012 5.26630 5.32689 5.39955 5.50411 5.53233 5.56894 5.60688 5.65423 5.72343 5.73323 5.84819 5.91620 6.05004 6.07821 6.17116 6.32069 6.42222 6.52908 6.62535 6.69624 6.80804 6.87930 7.11173 7.20727 7.49989 7.99175 8.05913 8.48025 9.27833 10.00494 10.21228 11.47124 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021217 B = 0.002916 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.391450 B = 9599.999329 C =10293.636732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.166 3.834 3 C -0.187 4.187 4 C 0.009 3.991 5 C -0.124 4.124 6 C -0.195 4.195 7 C 0.575 3.425 8 O -0.523 6.523 9 N -0.595 5.595 10 C 0.075 3.925 11 C 0.127 3.873 12 C -0.089 4.089 13 C -0.128 4.128 14 C -0.138 4.138 15 C 0.170 3.830 16 N -0.752 5.752 17 C -0.239 4.239 18 H 0.090 0.910 19 C 0.003 3.997 20 N -0.936 5.936 21 Si 0.881 3.119 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.355 3.645 26 O -0.473 6.473 27 N -0.505 5.505 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.026 0.974 47 H 0.027 0.973 48 H 0.362 0.638 49 H 0.258 0.742 50 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.184 16.916 -0.333 32.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.207 4.207 4 C 0.001 3.999 5 C -0.180 4.180 6 C -0.202 4.202 7 C 0.361 3.639 8 O -0.399 6.399 9 N -0.327 5.327 10 C -0.068 4.068 11 C 0.005 3.995 12 C -0.090 4.090 13 C -0.185 4.185 14 C -0.195 4.195 15 C 0.042 3.958 16 N -0.398 5.398 17 C -0.369 4.369 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.584 5.584 21 Si 0.712 3.288 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 C 0.175 3.825 26 O -0.281 6.281 27 N -0.226 5.226 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.161 0.839 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.044 0.956 47 H 0.045 0.955 48 H 0.196 0.804 49 H 0.069 0.931 50 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -28.024 16.173 -0.376 32.358 hybrid contribution -0.279 -0.645 0.374 0.796 sum -28.303 15.527 -0.002 32.282 Atomic orbital electron populations 1.20802 0.88153 1.03929 1.03539 1.21180 0.96991 0.87066 0.91983 1.21768 0.93608 0.99603 1.05733 1.20248 0.93642 0.94175 0.91879 1.20937 1.00543 0.93080 1.03476 1.20908 0.95202 0.94071 1.10032 1.17732 0.85854 0.76267 0.84044 1.90851 1.68964 1.49272 1.30791 1.47694 1.07259 1.72109 1.05634 1.21914 0.97334 1.01525 0.86016 1.21602 0.77636 0.96948 1.03347 1.21153 0.97076 0.94365 0.96449 1.21782 0.99623 1.00384 0.96749 1.21909 0.99747 1.01234 0.96651 1.20557 0.89286 0.87469 0.98441 1.42731 1.04681 1.01407 1.90977 1.19072 0.82231 0.93162 1.42418 0.89259 1.24646 0.95542 0.96755 1.02314 1.69699 1.12796 1.17954 1.57995 0.86595 0.81526 0.82966 0.77761 1.21118 1.21743 1.20319 1.19030 0.86291 0.84582 0.92607 1.84713 1.76483 1.32548 1.34371 1.67076 1.09157 1.30399 1.15926 0.89891 0.90212 0.90074 0.83865 0.89799 0.90396 0.90144 0.92767 0.89819 0.91609 0.90143 0.89467 0.93471 0.92887 0.92286 0.92852 0.92300 0.93018 0.95609 0.95467 0.80439 0.93149 0.73265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.16 36.01 0.37 -0.18 16 2 C 0.17 1.41 6.78 -82.53 -0.56 0.85 16 3 C -0.19 -1.36 9.41 -39.50 -0.37 -1.73 16 4 C 0.01 0.08 5.95 -103.93 -0.62 -0.54 16 5 C -0.12 -0.86 9.69 36.01 0.35 -0.51 16 6 C -0.20 -2.22 3.94 -104.69 -0.41 -2.64 16 7 C 0.58 7.54 3.69 -12.48 -0.05 7.50 16 8 O -0.52 -8.55 14.87 5.29 0.08 -8.48 16 9 N -0.60 -7.01 2.40 -182.81 -0.44 -7.45 16 10 C 0.08 0.70 9.16 59.84 0.55 1.25 16 11 C 0.13 1.66 4.60 -4.04 -0.02 1.64 16 12 C -0.09 -1.42 0.60 -154.50 -0.09 -1.52 16 13 C -0.13 -2.22 6.96 37.16 0.26 -1.96 16 14 C -0.14 -2.10 7.05 37.16 0.26 -1.83 16 15 C 0.17 3.37 5.15 -4.04 -0.02 3.35 16 16 N -0.75 -18.32 4.81 -59.91 -0.29 -18.61 16 17 C -0.24 -6.92 10.47 -15.05 -0.16 -7.08 16 18 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 19 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 20 N -0.94 -30.03 13.97 55.49 0.78 -29.26 16 21 Si 0.88 22.82 27.74 -169.99 -4.71 18.11 16 22 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 24 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16 25 C 0.35 4.23 7.35 -16.61 -0.12 4.11 16 26 O -0.47 -5.71 12.43 -17.97 -0.22 -5.94 16 27 N -0.51 -5.74 10.28 -9.21 -0.09 -5.84 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.23 8.07 -51.93 -0.42 -0.19 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.69 7.19 -51.93 -0.37 0.32 16 34 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.75 6.05 -51.93 -0.31 0.44 16 37 H 0.07 0.65 6.55 -51.93 -0.34 0.31 16 38 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 39 H 0.09 1.24 7.42 -51.93 -0.39 0.85 16 40 H 0.05 0.76 5.56 -51.93 -0.29 0.47 16 41 H 0.05 1.02 6.86 -51.93 -0.36 0.66 16 42 H 0.06 1.09 7.73 -51.93 -0.40 0.69 16 43 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 44 H 0.06 1.03 6.86 -51.92 -0.36 0.68 16 45 H 0.05 0.71 5.99 -51.93 -0.31 0.39 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.36 8.71 3.22 -40.82 -0.13 8.58 16 49 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 50 H 0.41 3.64 9.06 45.56 0.41 4.06 16 LS Contribution 391.79 15.07 5.90 5.90 Total: -1.00 -36.31 391.79 -6.81 -43.12 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -7.07 Total: 7.75 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -0.73 Total: 0.69 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.05 Total: -61.15 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.14 Total: -14.41 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.71 Total: 18.11 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.31 -6.81 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329320867.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.867 kcal (2) G-P(sol) polarization free energy of solvation -36.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds