Wall clock time and date at job start Tue Mar 31 2020 19:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38350 * 119.41116 * 2 1 4 4 C 1.38334 * 119.46124 * 180.28097 * 3 2 1 5 5 C 1.50703 * 120.82675 * 179.72959 * 4 3 2 6 6 C 1.39984 * 118.34814 * 359.45398 * 4 3 2 7 7 C 1.47523 * 120.59669 * 180.25398 * 6 4 3 8 8 O 1.21591 * 120.00257 * 90.00664 * 7 6 4 9 9 N 1.34775 * 120.00034 * 269.99854 * 7 6 4 10 10 C 1.46496 * 119.99966 * 0.02562 * 9 7 6 11 11 C 1.46501 * 120.00016 * 179.97438 * 9 7 6 12 12 C 1.53004 * 109.46938 * 90.00392 * 11 9 7 13 13 C 1.53001 * 109.47252 * 299.99806 * 12 11 9 14 14 C 1.52999 * 109.46989 * 60.00077 * 12 11 9 15 15 C 1.53005 * 109.46990 * 180.02562 * 12 11 9 16 16 N 1.46494 * 109.46937 * 180.02562 * 15 12 11 17 17 C 1.36942 * 119.99795 * 179.97438 * 16 15 12 18 18 H 1.07995 * 120.00080 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99680 * 179.97438 * 17 16 15 20 20 N 1.31619 * 119.99691 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00093 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47175 * 89.99834 * 21 19 17 23 23 H 1.48494 * 109.47192 * 209.99623 * 21 19 17 24 24 H 1.48500 * 109.47419 * 329.99847 * 21 19 17 25 25 C 1.40282 * 118.80833 * 0.27877 * 6 4 3 26 26 O 1.35425 * 119.80439 * 179.97438 * 25 6 4 27 27 N 1.31888 * 119.40545 * 179.72669 * 2 1 3 28 28 H 1.08997 * 109.46613 * 270.27684 * 1 2 3 29 29 H 1.09003 * 109.47050 * 30.27360 * 1 2 3 30 30 H 1.09004 * 109.47331 * 150.27775 * 1 2 3 31 31 H 1.08008 * 120.26825 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.47152 * 269.71867 * 5 4 3 33 33 H 1.09001 * 109.46980 * 149.71967 * 5 4 3 34 34 H 1.09004 * 109.47113 * 29.71948 * 5 4 3 35 35 H 1.09000 * 109.47315 * 89.99962 * 10 9 7 36 36 H 1.09007 * 109.47187 * 209.99681 * 10 9 7 37 37 H 1.09000 * 109.47474 * 329.99517 * 10 9 7 38 38 H 1.09000 * 109.47217 * 210.00163 * 11 9 7 39 39 H 1.08995 * 109.47506 * 330.00578 * 11 9 7 40 40 H 1.08998 * 109.46688 * 59.99805 * 13 12 11 41 41 H 1.08994 * 109.47216 * 179.97438 * 13 12 11 42 42 H 1.08997 * 109.47133 * 300.00581 * 13 12 11 43 43 H 1.09000 * 109.47390 * 60.00091 * 14 12 11 44 44 H 1.09009 * 109.46684 * 180.02562 * 14 12 11 45 45 H 1.08999 * 109.47052 * 299.99454 * 14 12 11 46 46 H 1.09000 * 109.47093 * 299.99727 * 15 12 11 47 47 H 1.08997 * 109.46965 * 59.99682 * 15 12 11 48 48 H 0.96998 * 120.00254 * 359.97438 * 16 15 12 49 49 H 0.96997 * 119.99908 * 179.97438 * 20 19 17 50 50 H 0.96704 * 113.99539 * 89.99363 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5698 1.2064 -0.0059 5 6 4.3409 2.5012 -0.0122 6 6 4.2356 -0.0249 0.0000 7 6 5.7097 -0.0815 -0.0002 8 8 6.3176 -0.0996 1.0526 9 7 6.3827 -0.1132 -1.1675 10 6 5.6503 -0.0910 -2.4361 11 6 7.8466 -0.1688 -1.1678 12 6 8.3015 -1.6296 -1.1603 13 6 7.7650 -2.3245 0.0928 14 6 7.7640 -2.3374 -2.4057 15 6 9.8304 -1.6877 -1.1600 16 7 10.2659 -3.0864 -1.1535 17 6 11.6018 -3.3876 -1.1525 18 1 12.3343 -2.5939 -1.1569 19 6 12.0145 -4.7130 -1.1458 20 7 13.2984 -5.0024 -1.1454 21 14 10.7476 -6.0856 -1.1389 22 1 10.4118 -6.4564 -2.5371 23 1 11.3029 -7.2681 -0.4330 24 1 9.5208 -5.6235 -0.4411 25 6 3.4758 -1.2042 0.0057 26 8 4.0991 -2.4065 0.0109 27 7 2.1546 -1.1490 0.0055 28 1 -0.3632 0.0050 1.0277 29 1 -0.3633 0.8875 -0.5181 30 1 -0.3634 -0.8925 -0.5095 31 1 1.6412 2.1375 0.0004 32 1 4.5267 2.8084 -1.0414 33 1 5.2915 2.3604 0.5023 34 1 3.7621 3.2713 0.4980 35 1 5.5084 0.9414 -2.7557 36 1 6.2188 -0.6308 -3.1934 37 1 4.6787 -0.5670 -2.3032 38 1 8.2289 0.3262 -2.0605 39 1 8.2296 0.3354 -0.2806 40 1 6.6758 -2.2831 0.0929 41 1 8.0886 -3.3653 0.0978 42 1 8.1478 -1.8202 0.9800 43 1 8.1463 -1.8424 -3.2985 44 1 8.0877 -3.3783 -2.4002 45 1 6.6748 -2.2961 -2.4055 46 1 10.2130 -1.1926 -2.0525 47 1 10.2129 -1.1835 -0.2725 48 1 9.6081 -3.7992 -1.1499 49 1 13.5868 -5.9285 -1.1404 50 1 4.2805 -2.7515 0.8959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329320867.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:58 Heat of formation + Delta-G solvation = -54.087111 kcal Electronic energy + Delta-G solvation = -30526.775699 eV Core-core repulsion = 26553.809667 eV Total energy + Delta-G solvation = -3972.966033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.21541 -40.75708 -38.77445 -38.43253 -36.53742 -35.38897 -34.72940 -32.90078 -32.60152 -29.75718 -28.95535 -28.53056 -28.08945 -27.53824 -26.58310 -24.51408 -23.88577 -22.57999 -20.92277 -20.25832 -19.51861 -19.35593 -18.51004 -18.29844 -17.44691 -16.85485 -16.68398 -16.37796 -15.90391 -15.60844 -15.41326 -15.09778 -14.99713 -14.61255 -14.48178 -14.28658 -14.17321 -14.01718 -13.97411 -13.88444 -13.76052 -13.38829 -13.25078 -13.21846 -12.95955 -12.88828 -12.82956 -12.67079 -12.56286 -12.48536 -12.27385 -12.12548 -11.76186 -11.71174 -11.57372 -11.23802 -10.99872 -10.62267 -10.43953 -9.84317 -9.67500 -9.28827 -8.04491 -5.36054 -0.29021 0.03851 1.33285 1.35601 1.39909 1.42822 1.92985 2.27547 2.45034 2.64473 3.26611 3.28784 3.54483 3.55823 3.62353 3.86360 3.90089 3.98106 4.03233 4.16944 4.21785 4.28301 4.41936 4.48525 4.52831 4.56682 4.59060 4.66556 4.74978 4.77312 4.80406 4.81090 4.87944 4.92498 4.95977 5.01939 5.09502 5.11071 5.13139 5.15261 5.19154 5.37223 5.44939 5.46379 5.51884 5.74787 6.20288 6.26518 6.36115 6.81182 7.02557 7.06680 7.84023 8.02838 9.17376 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021217 B = 0.002916 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.391450 B = 9599.999329 C =10293.636732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.157 3.843 3 C -0.174 4.174 4 C 0.006 3.994 5 C -0.121 4.121 6 C -0.212 4.212 7 C 0.577 3.423 8 O -0.565 6.565 9 N -0.591 5.591 10 C 0.073 3.927 11 C 0.134 3.866 12 C -0.080 4.080 13 C -0.118 4.118 14 C -0.132 4.132 15 C 0.167 3.833 16 N -0.753 5.753 17 C -0.229 4.229 18 H 0.059 0.941 19 C -0.062 4.062 20 N -0.983 5.983 21 Si 0.948 3.052 22 H -0.274 1.274 23 H -0.294 1.294 24 H -0.261 1.261 25 C 0.337 3.663 26 O -0.490 6.490 27 N -0.531 5.531 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.183 0.817 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.109 0.891 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.030 0.970 42 H 0.040 0.960 43 H 0.070 0.930 44 H 0.034 0.966 45 H 0.068 0.932 46 H 0.037 0.963 47 H 0.017 0.983 48 H 0.365 0.635 49 H 0.258 0.742 50 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.814 18.879 -1.591 37.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.020 3.980 3 C -0.193 4.193 4 C -0.002 4.002 5 C -0.177 4.177 6 C -0.219 4.219 7 C 0.365 3.635 8 O -0.444 6.444 9 N -0.322 5.322 10 C -0.069 4.069 11 C 0.011 3.989 12 C -0.082 4.082 13 C -0.175 4.175 14 C -0.190 4.190 15 C 0.040 3.960 16 N -0.400 5.400 17 C -0.360 4.360 18 H 0.077 0.923 19 C -0.254 4.254 20 N -0.634 5.634 21 Si 0.775 3.225 22 H -0.200 1.200 23 H -0.221 1.221 24 H -0.186 1.186 25 C 0.158 3.842 26 O -0.299 6.299 27 N -0.252 5.252 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.091 0.909 31 H 0.200 0.800 32 H 0.120 0.880 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.053 0.947 45 H 0.087 0.913 46 H 0.055 0.945 47 H 0.035 0.965 48 H 0.199 0.801 49 H 0.067 0.933 50 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -31.708 18.174 -1.661 36.585 hybrid contribution 0.805 -1.117 0.788 1.586 sum -30.904 17.058 -0.873 35.310 Atomic orbital electron populations 1.20922 0.85759 1.04994 1.04514 1.21859 0.98582 0.86820 0.90729 1.22158 0.92927 1.00702 1.03548 1.20574 0.94582 0.93929 0.91126 1.20984 0.99454 0.92712 1.04564 1.20809 0.93912 0.95075 1.12081 1.18028 0.86648 0.75209 0.83643 1.90826 1.70018 1.51255 1.32318 1.47721 1.06672 1.71348 1.06429 1.22082 0.96756 1.03422 0.84647 1.21449 0.78731 0.94595 1.04169 1.21058 0.94192 0.96628 0.96299 1.21673 1.00237 0.98788 0.96849 1.21867 1.00807 0.99670 0.96615 1.20721 0.92139 0.84893 0.98220 1.42746 1.02948 1.03540 1.90735 1.19068 0.83760 0.92463 1.40696 0.92287 1.25422 0.97533 0.99435 1.02999 1.69868 1.15068 1.18409 1.60041 0.85518 0.79357 0.79327 0.78265 1.20003 1.22051 1.18590 1.19138 0.86765 0.84478 0.93857 1.84661 1.76796 1.33219 1.35267 1.67110 1.08921 1.32139 1.17060 0.88823 0.87269 0.90876 0.79950 0.88046 0.92848 0.87660 0.89997 0.89131 0.92135 0.87259 0.90818 0.92370 0.95080 0.94101 0.91092 0.94687 0.91337 0.94529 0.96525 0.80100 0.93346 0.72541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 10.16 71.24 0.72 -0.03 16 2 C 0.16 2.29 6.78 42.58 0.29 2.58 16 3 C -0.17 -1.91 9.41 22.32 0.21 -1.70 16 4 C 0.01 0.09 5.95 -19.42 -0.12 -0.03 16 5 C -0.12 -1.32 9.69 71.24 0.69 -0.63 16 6 C -0.21 -4.61 3.94 -19.91 -0.08 -4.69 16 7 C 0.58 14.82 3.69 86.69 0.32 15.14 16 8 O -0.56 -18.86 14.87 -4.00 -0.06 -18.92 16 9 N -0.59 -12.96 2.40 -850.56 -2.04 -15.00 16 10 C 0.07 1.14 9.16 127.77 1.17 2.31 16 11 C 0.13 3.30 4.60 86.38 0.40 3.70 16 12 C -0.08 -2.50 0.60 -52.18 -0.03 -2.53 16 13 C -0.12 -4.14 6.96 71.98 0.50 -3.64 16 14 C -0.13 -3.77 7.05 71.98 0.51 -3.26 16 15 C 0.17 6.58 5.15 86.38 0.44 7.02 16 16 N -0.75 -36.83 4.81 -343.45 -1.65 -38.48 16 17 C -0.23 -13.53 10.47 84.03 0.88 -12.64 16 18 H 0.06 3.78 8.06 -2.91 -0.02 3.76 16 19 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 20 N -0.98 -64.66 13.97 21.65 0.30 -64.35 16 21 Si 0.95 47.63 27.74 68.60 1.90 49.54 16 22 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 24 H -0.26 -12.25 6.52 99.48 0.65 -11.60 16 25 C 0.34 7.90 7.35 85.13 0.63 8.52 16 26 O -0.49 -12.01 12.43 -87.20 -1.08 -13.09 16 27 N -0.53 -11.55 10.28 -296.05 -3.04 -14.59 16 28 H 0.09 0.50 8.14 -2.39 -0.02 0.49 16 29 H 0.11 0.14 8.07 -2.39 -0.02 0.12 16 30 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 0.88 7.19 -2.39 -0.02 0.86 16 34 H 0.10 0.61 8.10 -2.38 -0.02 0.60 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 1.31 6.05 -2.38 -0.01 1.30 16 37 H 0.06 1.06 6.55 -2.39 -0.02 1.04 16 38 H 0.11 2.09 8.07 -2.39 -0.02 2.07 16 39 H 0.07 2.06 7.42 -2.39 -0.02 2.04 16 40 H 0.06 1.89 5.56 -2.39 -0.01 1.88 16 41 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 42 H 0.04 1.55 7.73 -2.39 -0.02 1.53 16 43 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 44 H 0.03 1.16 6.86 -2.38 -0.02 1.15 16 45 H 0.07 1.72 5.99 -2.39 -0.01 1.71 16 46 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.36 17.41 3.22 -92.71 -0.30 17.11 16 49 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 50 H 0.41 7.89 9.06 -74.05 -0.67 7.22 16 Total: -1.00 -81.78 391.79 1.27 -80.51 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -0.06 Total: 27.61 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 7.00 Total: 6.78 kcal Atomic # 7 Polarization: -126.00 SS G_CDS: -6.43 Total: -132.43 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -1.14 Total: -32.01 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.90 Total: 49.54 kcal Total: -81.78 1.27 -80.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329320867.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.427 kcal (2) G-P(sol) polarization free energy of solvation -81.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds