Wall clock time and date at job start Tue Mar 31 2020 18:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38351 * 119.40879 * 2 1 4 4 C 1.38340 * 119.45672 * 180.02562 * 3 2 1 5 5 C 1.39983 * 118.34935 * 359.97438 * 4 3 2 6 6 C 1.47531 * 120.59635 * 180.02562 * 5 4 3 7 7 O 1.21585 * 119.99742 * 227.96055 * 6 5 4 8 8 N 1.34774 * 119.99633 * 47.96093 * 6 5 4 9 9 C 1.46499 * 120.00329 * 355.69166 * 8 6 5 10 10 C 1.46508 * 119.99440 * 175.69350 * 8 6 5 11 11 C 1.52998 * 109.47207 * 90.00096 * 10 8 6 12 12 C 1.53001 * 109.46889 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.47287 * 304.99653 * 12 11 10 14 14 N 1.46499 * 109.46959 * 64.99986 * 12 11 10 15 15 C 1.36938 * 119.99806 * 204.99716 * 14 12 11 16 16 H 1.08006 * 119.99921 * 359.97438 * 15 14 12 17 17 C 1.38811 * 119.99833 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99910 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00180 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47292 * 90.00447 * 19 17 15 21 21 H 1.48503 * 109.47320 * 210.00417 * 19 17 15 22 22 H 1.48495 * 109.47270 * 330.00442 * 19 17 15 23 23 C 1.53003 * 109.46667 * 185.00041 * 12 11 10 24 24 C 1.52995 * 109.47439 * 60.00227 * 23 12 11 25 25 C 1.52997 * 109.46899 * 180.02562 * 23 12 11 26 26 C 1.40274 * 118.80807 * 0.27276 * 5 4 3 27 27 O 1.35432 * 119.80238 * 179.72700 * 26 5 4 28 28 N 1.31881 * 119.40572 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46911 * 89.99895 * 1 2 3 30 30 H 1.08996 * 109.46692 * 210.00327 * 1 2 3 31 31 H 1.08996 * 109.46771 * 329.99758 * 1 2 3 32 32 H 1.08003 * 120.27435 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.82193 * 179.97438 * 4 3 2 34 34 H 1.08996 * 109.47134 * 275.02431 * 9 8 6 35 35 H 1.08993 * 109.46979 * 35.03165 * 9 8 6 36 36 H 1.09003 * 109.46979 * 155.02827 * 9 8 6 37 37 H 1.09002 * 109.46463 * 210.00130 * 10 8 6 38 38 H 1.09001 * 109.47199 * 329.99736 * 10 8 6 39 39 H 1.09003 * 109.46972 * 299.99693 * 11 10 8 40 40 H 1.09001 * 109.47335 * 59.99723 * 11 10 8 41 41 H 0.96999 * 120.00270 * 24.99885 * 14 12 11 42 42 H 0.96992 * 120.00016 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.46950 * 299.99819 * 23 12 11 44 44 H 1.09000 * 109.47383 * 59.99857 * 24 23 12 45 45 H 1.08993 * 109.47212 * 179.97438 * 24 23 12 46 46 H 1.09007 * 109.47017 * 299.99688 * 24 23 12 47 47 H 1.09005 * 109.47311 * 59.99589 * 25 23 12 48 48 H 1.09001 * 109.47400 * 179.97438 * 25 23 12 49 49 H 1.09008 * 109.47254 * 300.00120 * 25 23 12 50 50 H 0.96693 * 113.99736 * 90.00305 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5698 1.2064 -0.0005 5 6 4.2356 -0.0250 -0.0005 6 6 5.7098 -0.0816 -0.0005 7 8 6.2902 -0.8096 -0.7825 8 7 6.4131 0.6736 0.8664 9 6 5.7195 1.6201 1.7434 10 6 7.8713 0.5479 0.9315 11 6 8.5123 1.5319 -0.0493 12 6 10.0351 1.4010 0.0192 13 1 10.3655 1.5366 1.0491 14 7 10.4326 0.0714 -0.4502 15 6 11.6138 -0.4785 -0.0290 16 1 12.2526 0.0681 0.6490 17 6 11.9907 -1.7381 -0.4742 18 7 13.1259 -2.2670 -0.0689 19 14 10.8863 -2.6832 -1.6473 20 1 11.2527 -2.3515 -3.0477 21 1 11.0581 -4.1411 -1.4229 22 1 9.4701 -2.3085 -1.4042 23 6 10.6790 2.4687 -0.8676 24 6 10.2639 3.8573 -0.3774 25 6 12.2019 2.3375 -0.7997 26 6 3.4758 -1.2042 -0.0058 27 8 4.0991 -2.4065 -0.0115 28 7 2.1546 -1.1489 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3632 -0.8899 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6412 2.1376 -0.0004 33 1 4.1224 2.1343 -0.0010 34 1 5.5633 2.5594 1.2131 35 1 4.7559 1.2040 2.0372 36 1 6.3234 1.8010 2.6327 37 1 8.2102 0.7706 1.9432 38 1 8.1605 -0.4692 0.6670 39 1 8.1732 1.3092 -1.0610 40 1 8.2230 2.5490 0.2152 41 1 9.8591 -0.4193 -1.0594 42 1 13.3890 -3.1473 -0.3797 43 1 10.3487 2.3332 -1.8975 44 1 10.5943 3.9928 0.6525 45 1 10.7230 4.6178 -1.0089 46 1 9.1789 3.9505 -0.4262 47 1 12.4973 1.3482 -1.1492 48 1 12.6607 3.0978 -1.4318 49 1 12.5326 2.4727 0.2302 50 1 4.2803 -2.7597 0.8702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329759354.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:40 Heat of formation + Delta-G solvation = -56.002747 kcal Electronic energy + Delta-G solvation = -29819.822156 eV Core-core repulsion = 25846.773055 eV Total energy + Delta-G solvation = -3973.049101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.05375 -40.44540 -38.97215 -38.39996 -36.71816 -34.95572 -34.38754 -33.00925 -32.64984 -31.78192 -29.07816 -28.16355 -27.54966 -26.74067 -24.87980 -24.25457 -23.65924 -22.67116 -21.01446 -20.72069 -19.74267 -19.45439 -18.38371 -18.06123 -17.44579 -16.93057 -16.74623 -16.20077 -15.90242 -15.77684 -15.34279 -15.13928 -14.96092 -14.89342 -14.72031 -14.47309 -14.29115 -13.88790 -13.69377 -13.60526 -13.40886 -13.19339 -13.09341 -13.02213 -12.96205 -12.86624 -12.74710 -12.71219 -12.50359 -12.22935 -11.97160 -11.80007 -11.67129 -11.45388 -11.29630 -11.18831 -10.91739 -10.87717 -10.49997 -9.91821 -9.68897 -9.19951 -7.99134 -5.26411 -0.40546 0.05779 1.31682 1.36912 1.45625 1.55740 1.89838 2.38659 2.47772 2.60110 3.31664 3.33581 3.61326 3.64733 3.68888 3.93336 3.95425 4.09939 4.20755 4.27549 4.29418 4.38797 4.40786 4.47254 4.62801 4.66071 4.70672 4.71429 4.78450 4.80649 4.89456 4.91401 4.95521 5.01936 5.03447 5.13500 5.14291 5.19582 5.24809 5.35860 5.42731 5.49948 5.53976 5.66766 5.77267 5.87024 6.26102 6.28613 6.43960 6.79744 7.06893 7.13150 7.92156 8.08427 9.22680 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.003247 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.158698 B = 8620.141372 C =10158.005659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.158 3.842 3 C -0.171 4.171 4 C -0.020 4.020 5 C -0.216 4.216 6 C 0.553 3.447 7 O -0.571 6.571 8 N -0.603 5.603 9 C 0.066 3.934 10 C 0.122 3.878 11 C -0.124 4.124 12 C 0.183 3.817 13 H 0.055 0.945 14 N -0.752 5.752 15 C -0.192 4.192 16 H 0.074 0.926 17 C -0.058 4.058 18 N -0.982 5.982 19 Si 0.929 3.071 20 H -0.287 1.287 21 H -0.301 1.301 22 H -0.271 1.271 23 C -0.108 4.108 24 C -0.135 4.135 25 C -0.136 4.136 26 C 0.338 3.662 27 O -0.493 6.493 28 N -0.534 5.534 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.192 0.808 33 H 0.176 0.824 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.107 0.893 41 H 0.357 0.643 42 H 0.253 0.747 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.070 0.930 47 H 0.041 0.959 48 H 0.049 0.951 49 H 0.041 0.959 50 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.498 17.494 6.296 34.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.020 3.980 3 C -0.190 4.190 4 C -0.046 4.046 5 C -0.223 4.223 6 C 0.341 3.659 7 O -0.450 6.450 8 N -0.335 5.335 9 C -0.075 4.075 10 C 0.000 4.000 11 C -0.163 4.163 12 C 0.075 3.925 13 H 0.073 0.927 14 N -0.394 5.394 15 C -0.323 4.323 16 H 0.092 0.908 17 C -0.249 4.249 18 N -0.635 5.635 19 Si 0.760 3.240 20 H -0.214 1.214 21 H -0.228 1.228 22 H -0.197 1.197 23 C -0.129 4.129 24 C -0.193 4.193 25 C -0.193 4.193 26 C 0.160 3.840 27 O -0.302 6.302 28 N -0.254 5.254 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.209 0.791 33 H 0.193 0.807 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.125 0.875 41 H 0.189 0.811 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.060 0.940 48 H 0.068 0.932 49 H 0.060 0.940 50 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -28.438 16.340 5.456 33.249 hybrid contribution 0.857 -1.277 -0.638 1.665 sum -27.582 15.063 4.819 31.794 Atomic orbital electron populations 1.20957 0.85656 1.05243 1.04468 1.22028 0.98755 0.87069 0.90135 1.22370 0.93765 1.00616 1.02228 1.22155 0.95232 0.96479 0.90708 1.20904 0.93392 0.95912 1.12060 1.18424 0.87132 0.79679 0.80635 1.90875 1.72033 1.41693 1.40437 1.47914 1.07134 1.40264 1.38157 1.22332 0.98256 0.92363 0.94558 1.21453 0.77940 0.99866 1.00773 1.22132 0.94556 1.00724 0.98857 1.20480 0.92122 0.83441 0.96446 0.92660 1.43018 1.22272 1.17687 1.56404 1.19022 0.95537 0.97866 1.19895 0.90847 1.25134 0.98219 0.98851 1.02744 1.69815 1.24488 1.18079 1.51092 0.85791 0.79934 0.78182 0.80100 1.21406 1.22801 1.19651 1.21649 0.95542 0.96373 0.99366 1.21815 1.01723 0.94424 1.01306 1.21743 0.96257 1.00954 1.00381 1.19296 0.86888 0.84743 0.93112 1.84767 1.76996 1.33355 1.35078 1.67130 1.08721 1.32587 1.17010 0.89046 0.90869 0.86730 0.79088 0.80657 0.89500 0.90352 0.88781 0.88214 0.93735 0.94132 0.87483 0.81050 0.93791 0.93410 0.92217 0.92524 0.91098 0.94027 0.93196 0.93984 0.72601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.16 71.24 0.72 -0.04 16 2 C 0.16 2.34 6.78 42.58 0.29 2.63 16 3 C -0.17 -1.63 9.71 22.32 0.22 -1.41 16 4 C -0.02 -0.28 7.89 22.72 0.18 -0.10 16 5 C -0.22 -5.17 4.94 -19.91 -0.10 -5.27 16 6 C 0.55 17.05 7.00 86.69 0.61 17.65 16 7 O -0.57 -24.91 16.12 5.69 0.09 -24.82 16 8 N -0.60 -14.38 2.87 -850.56 -2.44 -16.83 16 9 C 0.07 0.76 9.10 127.77 1.16 1.92 16 10 C 0.12 3.62 5.30 86.38 0.46 4.08 16 11 C -0.12 -3.59 4.86 30.59 0.15 -3.44 16 12 C 0.18 6.56 2.02 44.99 0.09 6.65 16 13 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 14 N -0.75 -35.68 4.26 -322.93 -1.37 -37.05 16 15 C -0.19 -10.80 8.05 84.03 0.68 -10.12 16 16 H 0.07 4.39 7.62 -2.91 -0.02 4.37 16 17 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 18 N -0.98 -64.49 13.97 21.65 0.30 -64.18 16 19 Si 0.93 50.73 27.73 68.60 1.90 52.63 16 20 H -0.29 -15.50 7.11 99.48 0.71 -14.79 16 21 H -0.30 -16.64 7.11 99.48 0.71 -15.93 16 22 H -0.27 -14.77 6.52 99.48 0.65 -14.12 16 23 C -0.11 -3.53 2.69 -10.79 -0.03 -3.56 16 24 C -0.14 -3.07 8.85 71.98 0.64 -2.43 16 25 C -0.14 -5.08 8.26 71.98 0.59 -4.49 16 26 C 0.34 9.20 7.75 85.13 0.66 9.86 16 27 O -0.49 -15.03 12.58 -77.60 -0.98 -16.01 16 28 N -0.53 -12.65 10.28 -296.05 -3.04 -15.69 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.11 0.05 8.07 -2.39 -0.02 0.04 16 32 H 0.19 0.06 8.06 -2.91 -0.02 0.03 16 33 H 0.18 1.28 6.29 -2.91 -0.02 1.26 16 34 H 0.09 0.53 7.06 -2.39 -0.02 0.51 16 35 H 0.08 0.76 6.25 -2.39 -0.01 0.74 16 36 H 0.09 0.82 7.84 -2.39 -0.02 0.80 16 37 H 0.10 2.47 7.86 -2.39 -0.02 2.45 16 38 H 0.04 1.80 7.10 -2.39 -0.02 1.78 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.11 2.21 6.17 -2.39 -0.01 2.20 16 41 H 0.36 18.00 5.66 -92.71 -0.52 17.47 16 42 H 0.25 16.11 8.31 -92.71 -0.77 15.33 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.07 1.31 6.32 -2.38 -0.02 1.30 16 47 H 0.04 1.93 6.01 -2.38 -0.01 1.92 16 48 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 50 H 0.41 8.75 9.06 -74.06 -0.67 8.08 16 Total: -1.00 -88.91 398.30 0.95 -87.96 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: -0.29 Total: 25.16 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 6.78 Total: 8.83 kcal Atomic # 7 Polarization: -127.20 SS G_CDS: -6.56 Total: -133.76 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.88 Total: -40.83 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 1.90 Total: 52.63 kcal Total: -88.91 0.95 -87.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329759354.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.958 kcal (2) G-P(sol) polarization free energy of solvation -88.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds