Wall clock time and date at job start Tue Mar 31 2020 19:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38359 * 119.40840 * 2 1 4 4 C 1.38333 * 119.45891 * 179.97438 * 3 2 1 5 5 C 1.50692 * 120.82510 * 179.97438 * 4 3 2 6 6 C 1.39992 * 118.34755 * 0.02562 * 4 3 2 7 7 C 1.47521 * 120.59523 * 179.97438 * 6 4 3 8 8 O 1.21595 * 120.00156 * 89.99653 * 7 6 4 9 9 N 1.34777 * 119.99981 * 269.99653 * 7 6 4 10 10 C 1.46501 * 119.99980 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47067 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47214 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47446 * 305.00593 * 12 11 10 14 14 N 1.46506 * 109.46808 * 65.00388 * 12 11 10 15 15 C 1.36938 * 119.99589 * 205.00092 * 14 12 11 16 16 H 1.07999 * 120.00325 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99408 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00325 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99550 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47228 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47239 * 120.00535 * 19 17 15 22 22 H 1.48501 * 109.46793 * 240.00116 * 19 17 15 23 23 C 1.52995 * 109.47146 * 184.99844 * 12 11 10 24 24 C 1.53006 * 109.47051 * 60.00598 * 23 12 11 25 25 C 1.53004 * 109.47466 * 180.02562 * 23 12 11 26 26 C 1.40274 * 118.80839 * 0.26715 * 6 4 3 27 27 O 1.35430 * 119.80141 * 179.73201 * 26 6 4 28 28 N 1.31885 * 119.40689 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47301 * 89.99633 * 1 2 3 30 30 H 1.08997 * 109.46874 * 209.99525 * 1 2 3 31 31 H 1.08999 * 109.46711 * 329.99041 * 1 2 3 32 32 H 1.07993 * 120.26680 * 0.02967 * 3 2 1 33 33 H 1.08999 * 109.47368 * 270.02775 * 5 4 3 34 34 H 1.09000 * 109.47640 * 30.02517 * 5 4 3 35 35 H 1.09001 * 109.47604 * 150.03052 * 5 4 3 36 36 H 0.97001 * 120.00033 * 359.97438 * 9 7 6 37 37 H 1.08994 * 109.47071 * 60.00092 * 10 9 7 38 38 H 1.09003 * 109.47280 * 299.99975 * 10 9 7 39 39 H 1.09004 * 109.46980 * 60.00176 * 11 10 9 40 40 H 1.09003 * 109.47135 * 300.00167 * 11 10 9 41 41 H 0.96995 * 120.00050 * 24.72300 * 14 12 11 42 42 H 0.97000 * 119.99693 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.47311 * 300.00221 * 23 12 11 44 44 H 1.08999 * 109.46872 * 59.99661 * 24 23 12 45 45 H 1.09002 * 109.46739 * 180.02562 * 24 23 12 46 46 H 1.08999 * 109.46714 * 299.99418 * 24 23 12 47 47 H 1.09002 * 109.46510 * 59.99723 * 25 23 12 48 48 H 1.08993 * 109.47425 * 179.97438 * 25 23 12 49 49 H 1.08999 * 109.47176 * 300.00779 * 25 23 12 50 50 H 0.96698 * 113.99840 * 89.99960 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2065 0.0005 5 6 4.3408 2.5012 0.0000 6 6 4.2356 -0.0249 0.0005 7 6 5.7097 -0.0815 0.0005 8 8 6.3172 -0.1048 1.0535 9 7 6.3831 -0.1074 -1.1667 10 6 7.8470 -0.1630 -1.1667 11 6 8.3566 -0.1834 -2.6092 12 6 9.8855 -0.2408 -2.6093 13 1 10.2803 0.5872 -2.0205 14 7 10.3265 -1.5096 -2.0245 15 6 11.5654 -1.6043 -1.4489 16 1 12.2175 -0.7437 -1.4263 17 6 11.9830 -2.8064 -0.8943 18 7 11.1884 -3.8553 -0.9223 19 14 13.6733 -2.9357 -0.1097 20 1 14.3659 -1.6258 -0.2075 21 1 13.5282 -3.3129 1.3192 22 1 14.4692 -3.9711 -0.8166 23 6 10.3998 -0.1356 -4.0464 24 6 9.9393 1.1896 -4.6571 25 6 11.9287 -0.1936 -4.0465 26 6 3.4758 -1.2041 -0.0058 27 8 4.0992 -2.4064 -0.0114 28 7 2.1546 -1.1489 0.0005 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.6412 2.1375 0.0005 33 1 4.5267 2.8130 -1.0278 34 1 3.7621 3.2691 0.5134 35 1 5.2914 2.3583 0.5138 36 1 5.8984 -0.0892 -2.0068 37 1 8.1763 -1.0659 -0.6527 38 1 8.2439 0.7127 -0.6531 39 1 8.0273 0.7194 -3.1237 40 1 7.9597 -1.0593 -3.1224 41 1 9.7394 -2.2815 -2.0416 42 1 11.4802 -4.6951 -0.5345 43 1 10.0050 -0.9637 -4.6351 44 1 10.3340 2.0176 -4.0683 45 1 10.3053 1.2643 -5.6811 46 1 8.8500 1.2305 -4.6571 47 1 12.2564 -1.1378 -3.6115 48 1 12.2950 -0.1191 -5.0704 49 1 12.3238 0.6341 -3.4577 50 1 4.2797 -2.7599 0.8703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331211118.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:04 Heat of formation + Delta-G solvation = -51.175590 kcal Electronic energy + Delta-G solvation = -29212.241730 eV Core-core repulsion = 25239.401950 eV Total energy + Delta-G solvation = -3972.839780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.12978 -39.13962 -37.53786 -37.42904 -34.67897 -34.47059 -33.03765 -32.08935 -31.14904 -29.63251 -28.54137 -27.83901 -26.33419 -25.24070 -23.63852 -22.89358 -21.97048 -21.10762 -20.54543 -19.19620 -18.61520 -17.82669 -17.41385 -17.07900 -16.09556 -15.63859 -15.25110 -14.89901 -14.70061 -14.47137 -13.99049 -13.95272 -13.74571 -13.65813 -13.45316 -13.30488 -13.27418 -13.06421 -12.71882 -12.62973 -12.27957 -12.14986 -12.00223 -11.83954 -11.69265 -11.62149 -11.20300 -10.90418 -10.77152 -10.60453 -10.48157 -10.32690 -10.18525 -10.01740 -9.89598 -9.81926 -9.51434 -9.43697 -9.07049 -8.88032 -8.79593 -6.90941 -5.72632 -3.00296 0.51701 0.80952 2.57981 3.04446 3.19875 3.45816 3.50525 3.51809 3.53837 4.17564 4.21490 4.59805 4.62544 4.69287 4.89930 4.99503 5.07012 5.20165 5.21699 5.22881 5.29287 5.37414 5.49357 5.49937 5.56153 5.64150 5.70869 5.71191 5.71871 5.84093 5.92171 6.01407 6.15672 6.17753 6.23180 6.27771 6.39962 6.41160 6.54506 6.66399 6.70649 6.72435 6.83919 7.13738 7.24739 7.34441 7.55572 7.61301 7.75609 8.24881 8.45389 9.56981 10.13775 10.48532 11.49836 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.002694 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.989276 B =10389.254909 C =11479.073932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.166 3.834 3 C -0.189 4.189 4 C 0.010 3.990 5 C -0.125 4.125 6 C -0.200 4.200 7 C 0.571 3.429 8 O -0.529 6.529 9 N -0.713 5.713 10 C 0.122 3.878 11 C -0.136 4.136 12 C 0.186 3.814 13 H 0.049 0.951 14 N -0.721 5.721 15 C -0.231 4.231 16 H 0.072 0.928 17 C -0.014 4.014 18 N -0.930 5.930 19 Si 0.900 3.100 20 H -0.281 1.281 21 H -0.293 1.293 22 H -0.293 1.293 23 C -0.111 4.111 24 C -0.146 4.146 25 C -0.140 4.140 26 C 0.357 3.643 27 O -0.474 6.474 28 N -0.507 5.507 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.143 0.857 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.397 0.603 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.049 0.951 47 H 0.086 0.914 48 H 0.029 0.971 49 H 0.040 0.960 50 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.559 13.325 -2.249 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.209 4.209 4 C 0.002 3.998 5 C -0.182 4.182 6 C -0.207 4.207 7 C 0.355 3.645 8 O -0.406 6.406 9 N -0.363 5.363 10 C 0.000 4.000 11 C -0.175 4.175 12 C 0.075 3.925 13 H 0.067 0.933 14 N -0.362 5.362 15 C -0.362 4.362 16 H 0.090 0.910 17 C -0.210 4.210 18 N -0.579 5.579 19 Si 0.732 3.268 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.133 4.133 24 C -0.204 4.204 25 C -0.197 4.197 26 C 0.177 3.823 27 O -0.282 6.282 28 N -0.227 5.227 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.231 0.769 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.217 0.783 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.105 0.895 48 H 0.048 0.952 49 H 0.059 0.941 50 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -20.329 12.563 -1.985 23.980 hybrid contribution 1.077 0.092 0.431 1.163 sum -19.252 12.655 -1.555 23.092 Atomic orbital electron populations 1.20796 0.88187 1.03864 1.03519 1.21181 0.96968 0.87105 0.91962 1.21760 0.93616 0.99572 1.05922 1.20267 0.93650 0.94203 0.91632 1.20950 1.00612 0.93039 1.03581 1.20984 0.95306 0.94071 1.10321 1.17724 0.85740 0.76584 0.84475 1.90859 1.69179 1.49377 1.31145 1.46100 1.08573 1.73831 1.07794 1.21513 0.76717 1.03627 0.98191 1.22138 0.98569 1.01815 0.94946 1.20176 0.89492 0.90861 0.91928 0.93335 1.42456 1.17476 1.08022 1.68252 1.19229 0.92389 0.95795 1.28771 0.90994 1.24714 0.98170 0.96174 1.01897 1.69663 1.36076 1.01361 1.50795 0.86214 0.84326 0.77320 0.78954 1.20588 1.21975 1.22026 1.21776 0.96894 0.95860 0.98742 1.21936 1.00260 0.98398 0.99835 1.21829 0.95092 1.03832 0.98994 1.19053 0.86279 0.84674 0.92272 1.84707 1.76529 1.32386 1.34564 1.67074 1.09202 1.30397 1.16039 0.89898 0.90111 0.90251 0.83880 0.89682 0.90159 0.90290 0.76929 0.89512 0.91717 0.91557 0.91551 0.78270 0.93650 0.92188 0.93295 0.93833 0.93247 0.89483 0.95229 0.94134 0.73112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.16 36.01 0.37 -0.27 16 2 C 0.17 1.59 6.78 -82.52 -0.56 1.03 16 3 C -0.19 -1.59 9.41 -39.50 -0.37 -1.96 16 4 C 0.01 0.11 5.95 -103.93 -0.62 -0.51 16 5 C -0.13 -1.04 9.69 36.00 0.35 -0.69 16 6 C -0.20 -2.61 5.66 -104.69 -0.59 -3.20 16 7 C 0.57 8.85 5.42 -12.48 -0.07 8.78 16 8 O -0.53 -10.35 17.11 5.28 0.09 -10.26 16 9 N -0.71 -10.02 5.55 -61.35 -0.34 -10.36 16 10 C 0.12 2.01 5.56 -4.04 -0.02 1.98 16 11 C -0.14 -2.05 4.65 -26.73 -0.12 -2.18 16 12 C 0.19 3.44 2.02 -67.93 -0.14 3.30 16 13 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 14 N -0.72 -16.96 4.45 -53.42 -0.24 -17.20 16 15 C -0.23 -6.09 7.57 -15.06 -0.11 -6.21 16 16 H 0.07 1.87 7.39 -52.49 -0.39 1.48 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -27.83 13.06 55.49 0.72 -27.10 16 19 Si 0.90 22.39 29.55 -169.99 -5.02 17.36 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 C -0.11 -1.88 2.69 -90.62 -0.24 -2.13 16 24 C -0.15 -1.97 8.85 37.16 0.33 -1.64 16 25 C -0.14 -2.56 8.26 37.16 0.31 -2.26 16 26 C 0.36 4.80 7.77 -16.61 -0.13 4.67 16 27 O -0.47 -6.43 13.01 -17.98 -0.23 -6.67 16 28 N -0.51 -6.36 10.28 -9.21 -0.09 -6.45 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 32 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 35 H 0.08 0.83 7.19 -51.93 -0.37 0.45 16 36 H 0.40 4.60 8.46 -40.82 -0.35 4.26 16 37 H 0.09 1.79 7.75 -51.93 -0.40 1.39 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.83 6.17 -51.93 -0.32 0.51 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.38 9.81 7.80 -40.82 -0.32 9.50 16 42 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.59 6.32 -51.93 -0.33 0.26 16 47 H 0.09 1.90 6.01 -51.93 -0.31 1.58 16 48 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.41 4.09 9.06 45.56 0.41 4.50 16 LS Contribution 408.47 15.07 6.16 6.16 Total: -1.00 -33.87 408.47 -8.11 -41.98 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -7.42 Total: 14.31 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -1.73 Total: -1.76 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.05 Total: -61.12 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.14 Total: -16.93 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.87 -8.11 -41.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331211118.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.200 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds