Wall clock time and date at job start Tue Mar 31 2020 19:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38359 * 119.40840 * 2 1 4 4 C 1.38333 * 119.45891 * 179.97438 * 3 2 1 5 5 C 1.50692 * 120.82510 * 179.97438 * 4 3 2 6 6 C 1.39992 * 118.34755 * 0.02562 * 4 3 2 7 7 C 1.47521 * 120.59523 * 179.97438 * 6 4 3 8 8 O 1.21595 * 120.00156 * 89.99653 * 7 6 4 9 9 N 1.34777 * 119.99981 * 269.99653 * 7 6 4 10 10 C 1.46501 * 119.99980 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47067 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47214 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47446 * 305.00593 * 12 11 10 14 14 N 1.46506 * 109.46808 * 65.00388 * 12 11 10 15 15 C 1.36938 * 119.99589 * 205.00092 * 14 12 11 16 16 H 1.07999 * 120.00325 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99408 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00325 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99550 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47228 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47239 * 120.00535 * 19 17 15 22 22 H 1.48501 * 109.46793 * 240.00116 * 19 17 15 23 23 C 1.52995 * 109.47146 * 184.99844 * 12 11 10 24 24 C 1.53006 * 109.47051 * 60.00598 * 23 12 11 25 25 C 1.53004 * 109.47466 * 180.02562 * 23 12 11 26 26 C 1.40274 * 118.80839 * 0.26715 * 6 4 3 27 27 O 1.35430 * 119.80141 * 179.73201 * 26 6 4 28 28 N 1.31885 * 119.40689 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47301 * 89.99633 * 1 2 3 30 30 H 1.08997 * 109.46874 * 209.99525 * 1 2 3 31 31 H 1.08999 * 109.46711 * 329.99041 * 1 2 3 32 32 H 1.07993 * 120.26680 * 0.02967 * 3 2 1 33 33 H 1.08999 * 109.47368 * 270.02775 * 5 4 3 34 34 H 1.09000 * 109.47640 * 30.02517 * 5 4 3 35 35 H 1.09001 * 109.47604 * 150.03052 * 5 4 3 36 36 H 0.97001 * 120.00033 * 359.97438 * 9 7 6 37 37 H 1.08994 * 109.47071 * 60.00092 * 10 9 7 38 38 H 1.09003 * 109.47280 * 299.99975 * 10 9 7 39 39 H 1.09004 * 109.46980 * 60.00176 * 11 10 9 40 40 H 1.09003 * 109.47135 * 300.00167 * 11 10 9 41 41 H 0.96995 * 120.00050 * 24.72300 * 14 12 11 42 42 H 0.97000 * 119.99693 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.47311 * 300.00221 * 23 12 11 44 44 H 1.08999 * 109.46872 * 59.99661 * 24 23 12 45 45 H 1.09002 * 109.46739 * 180.02562 * 24 23 12 46 46 H 1.08999 * 109.46714 * 299.99418 * 24 23 12 47 47 H 1.09002 * 109.46510 * 59.99723 * 25 23 12 48 48 H 1.08993 * 109.47425 * 179.97438 * 25 23 12 49 49 H 1.08999 * 109.47176 * 300.00779 * 25 23 12 50 50 H 0.96698 * 113.99840 * 89.99960 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2065 0.0005 5 6 4.3408 2.5012 0.0000 6 6 4.2356 -0.0249 0.0005 7 6 5.7097 -0.0815 0.0005 8 8 6.3172 -0.1048 1.0535 9 7 6.3831 -0.1074 -1.1667 10 6 7.8470 -0.1630 -1.1667 11 6 8.3566 -0.1834 -2.6092 12 6 9.8855 -0.2408 -2.6093 13 1 10.2803 0.5872 -2.0205 14 7 10.3265 -1.5096 -2.0245 15 6 11.5654 -1.6043 -1.4489 16 1 12.2175 -0.7437 -1.4263 17 6 11.9830 -2.8064 -0.8943 18 7 11.1884 -3.8553 -0.9223 19 14 13.6733 -2.9357 -0.1097 20 1 14.3659 -1.6258 -0.2075 21 1 13.5282 -3.3129 1.3192 22 1 14.4692 -3.9711 -0.8166 23 6 10.3998 -0.1356 -4.0464 24 6 9.9393 1.1896 -4.6571 25 6 11.9287 -0.1936 -4.0465 26 6 3.4758 -1.2041 -0.0058 27 8 4.0992 -2.4064 -0.0114 28 7 2.1546 -1.1489 0.0005 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.6412 2.1375 0.0005 33 1 4.5267 2.8130 -1.0278 34 1 3.7621 3.2691 0.5134 35 1 5.2914 2.3583 0.5138 36 1 5.8984 -0.0892 -2.0068 37 1 8.1763 -1.0659 -0.6527 38 1 8.2439 0.7127 -0.6531 39 1 8.0273 0.7194 -3.1237 40 1 7.9597 -1.0593 -3.1224 41 1 9.7394 -2.2815 -2.0416 42 1 11.4802 -4.6951 -0.5345 43 1 10.0050 -0.9637 -4.6351 44 1 10.3340 2.0176 -4.0683 45 1 10.3053 1.2643 -5.6811 46 1 8.8500 1.2305 -4.6571 47 1 12.2564 -1.1378 -3.6115 48 1 12.2950 -0.1191 -5.0704 49 1 12.3238 0.6341 -3.4577 50 1 4.2797 -2.7599 0.8703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331211118.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:02 Heat of formation + Delta-G solvation = -78.477443 kcal Electronic energy + Delta-G solvation = -29213.425627 eV Core-core repulsion = 25239.401950 eV Total energy + Delta-G solvation = -3974.023677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.05021 -40.33523 -38.94721 -38.45591 -36.05928 -35.27576 -34.90178 -32.94548 -32.58081 -31.28188 -29.47051 -28.49652 -27.62634 -26.80792 -24.96344 -24.28370 -22.90067 -22.47798 -21.61578 -20.66472 -19.54400 -19.20131 -18.80074 -18.28496 -17.29124 -16.93734 -16.64698 -16.18671 -15.85138 -15.64302 -15.33341 -15.20122 -15.01035 -14.94162 -14.52229 -14.39216 -14.20811 -13.98668 -13.90848 -13.51003 -13.25006 -13.19924 -12.97204 -12.92059 -12.89748 -12.85422 -12.66907 -12.64130 -12.47824 -12.19585 -11.97372 -11.94037 -11.75388 -11.49406 -11.29227 -11.17600 -10.80389 -10.64024 -10.50094 -10.19167 -9.88400 -8.90582 -7.88144 -5.12962 -0.32020 0.01925 1.36415 1.45173 1.46536 1.54914 2.05177 2.26460 2.58864 2.63305 3.39263 3.45121 3.54375 3.62152 3.89269 3.92311 3.96984 4.14814 4.19163 4.27259 4.28862 4.41369 4.51075 4.52809 4.57319 4.65764 4.67553 4.79806 4.80166 4.82294 4.95767 4.97554 5.01105 5.03704 5.10753 5.14773 5.19277 5.22896 5.25030 5.34695 5.39296 5.45514 5.51506 5.58735 5.71520 5.81085 6.34283 6.36076 6.38984 6.78765 7.06455 7.40603 8.17824 8.39221 9.35820 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.002694 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.989276 B =10389.254909 C =11479.073932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.160 3.840 3 C -0.173 4.173 4 C 0.009 3.991 5 C -0.123 4.123 6 C -0.221 4.221 7 C 0.575 3.425 8 O -0.579 6.579 9 N -0.699 5.699 10 C 0.134 3.866 11 C -0.120 4.120 12 C 0.180 3.820 13 H 0.043 0.957 14 N -0.731 5.731 15 C -0.208 4.208 16 H 0.076 0.924 17 C -0.082 4.082 18 N -0.971 5.971 19 Si 0.956 3.044 20 H -0.265 1.265 21 H -0.302 1.302 22 H -0.297 1.297 23 C -0.106 4.106 24 C -0.138 4.138 25 C -0.138 4.138 26 C 0.338 3.662 27 O -0.494 6.494 28 N -0.531 5.531 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.188 0.812 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.050 0.950 36 H 0.412 0.588 37 H 0.037 0.963 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.066 0.934 41 H 0.370 0.630 42 H 0.245 0.755 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.070 0.930 47 H 0.045 0.955 48 H 0.050 0.950 49 H 0.042 0.958 50 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.817 16.965 -3.889 28.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.022 3.978 3 C -0.192 4.192 4 C 0.002 3.998 5 C -0.179 4.179 6 C -0.228 4.228 7 C 0.361 3.639 8 O -0.460 6.460 9 N -0.349 5.349 10 C 0.011 3.989 11 C -0.158 4.158 12 C 0.071 3.929 13 H 0.061 0.939 14 N -0.370 5.370 15 C -0.340 4.340 16 H 0.094 0.906 17 C -0.273 4.273 18 N -0.623 5.623 19 Si 0.787 3.213 20 H -0.189 1.189 21 H -0.230 1.230 22 H -0.225 1.225 23 C -0.127 4.127 24 C -0.196 4.196 25 C -0.195 4.195 26 C 0.159 3.841 27 O -0.304 6.304 28 N -0.252 5.252 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.205 0.795 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.069 0.931 36 H 0.249 0.751 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.126 0.874 40 H 0.085 0.915 41 H 0.202 0.798 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.061 0.939 50 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -22.603 16.267 -3.681 28.090 hybrid contribution 1.662 -0.922 0.899 2.103 sum -20.940 15.346 -2.782 26.110 Atomic orbital electron populations 1.20940 0.85411 1.05065 1.04721 1.21953 0.98763 0.86770 0.90284 1.22190 0.92706 1.00857 1.03473 1.20603 0.94745 0.93739 0.90753 1.21014 0.99426 0.92725 1.04760 1.20816 0.93348 0.95452 1.13155 1.18133 0.86928 0.75058 0.83784 1.90821 1.70575 1.51659 1.32897 1.45916 1.07564 1.73066 1.08401 1.21181 0.78201 1.00898 0.98668 1.22011 0.95928 1.03787 0.94107 1.20446 0.91756 0.88115 0.92598 0.93918 1.42649 1.16412 1.09494 1.68472 1.19527 0.93030 0.95283 1.26191 0.90576 1.25397 1.01392 0.96428 1.04093 1.69812 1.37764 1.01641 1.53128 0.85294 0.81033 0.77600 0.77324 1.18935 1.22974 1.22473 1.21641 0.95821 0.98054 0.97218 1.21850 1.01664 0.95754 1.00306 1.21762 0.96284 1.01521 0.99971 1.19180 0.86912 0.84460 0.93585 1.84655 1.76917 1.33151 1.35640 1.67131 1.08631 1.32244 1.17170 0.88487 0.90817 0.87180 0.79510 0.87813 0.87232 0.93095 0.75129 0.94441 0.92294 0.87422 0.91542 0.79822 0.94579 0.93063 0.92655 0.92413 0.91117 0.93624 0.93114 0.93903 0.72215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 10.16 71.24 0.72 -0.16 16 2 C 0.16 2.66 6.78 42.58 0.29 2.95 16 3 C -0.17 -2.27 9.41 22.32 0.21 -2.06 16 4 C 0.01 0.17 5.95 -19.42 -0.12 0.06 16 5 C -0.12 -1.70 9.69 71.23 0.69 -1.01 16 6 C -0.22 -5.77 5.66 -19.91 -0.11 -5.88 16 7 C 0.58 18.45 5.42 86.69 0.47 18.92 16 8 O -0.58 -24.05 17.11 -4.01 -0.07 -24.12 16 9 N -0.70 -19.81 5.55 -466.28 -2.59 -22.40 16 10 C 0.13 4.52 5.56 86.38 0.48 5.00 16 11 C -0.12 -3.48 4.65 30.59 0.14 -3.33 16 12 C 0.18 6.53 2.02 44.99 0.09 6.62 16 13 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 14 N -0.73 -35.40 4.45 -322.93 -1.44 -36.84 16 15 C -0.21 -11.27 7.57 84.03 0.64 -10.63 16 16 H 0.08 3.99 7.39 -2.91 -0.02 3.97 16 17 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 18 N -0.97 -60.79 13.06 21.65 0.28 -60.51 16 19 Si 0.96 47.48 29.55 68.60 2.03 49.51 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 22 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 23 C -0.11 -3.41 2.69 -10.79 -0.03 -3.44 16 24 C -0.14 -3.17 8.85 71.98 0.64 -2.53 16 25 C -0.14 -4.89 8.26 71.98 0.59 -4.30 16 26 C 0.34 9.28 7.77 85.13 0.66 9.94 16 27 O -0.49 -14.35 13.01 -87.26 -1.14 -15.49 16 28 N -0.53 -13.04 10.28 -296.05 -3.04 -16.08 16 29 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.11 0.28 8.07 -2.39 -0.02 0.26 16 32 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.11 0.87 8.10 -2.39 -0.02 0.85 16 35 H 0.05 1.02 7.19 -2.39 -0.02 1.01 16 36 H 0.41 9.14 8.46 -92.71 -0.78 8.36 16 37 H 0.04 1.65 7.75 -2.39 -0.02 1.63 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.11 2.28 6.17 -2.39 -0.01 2.26 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.37 19.83 7.80 -92.71 -0.72 19.11 16 42 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.07 1.34 6.32 -2.39 -0.02 1.32 16 47 H 0.04 1.99 6.01 -2.39 -0.01 1.98 16 48 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.42 9.46 9.06 -74.06 -0.67 8.79 16 Total: -1.00 -79.34 408.47 -1.34 -80.68 By element: Atomic # 1 Polarization: 40.59 SS G_CDS: -1.20 Total: 39.39 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 5.83 Total: 5.86 kcal Atomic # 7 Polarization: -129.04 SS G_CDS: -6.79 Total: -135.83 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -1.20 Total: -39.61 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -79.34 -1.34 -80.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331211118.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.199 kcal (2) G-P(sol) polarization free energy of solvation -79.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds