Wall clock time and date at job start Tue Mar 31 2020 19:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40198 * 120.36635 * 2 1 4 4 C 1.35352 * 119.94910 * 179.76998 * 3 2 1 5 5 N 1.35758 * 120.70194 * 0.50916 * 4 3 2 6 6 C 1.46499 * 119.62714 * 179.76327 * 5 4 3 7 7 C 1.50701 * 109.46992 * 269.72368 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99566 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.46983 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47452 * 179.97438 * 11 10 9 13 13 H 1.08990 * 109.46781 * 305.00501 * 12 11 10 14 14 N 1.46507 * 109.46689 * 64.99924 * 12 11 10 15 15 C 1.36938 * 119.99746 * 204.99815 * 14 12 11 16 16 H 1.08003 * 119.99690 * 0.02562 * 15 14 12 17 17 C 1.38809 * 119.99812 * 179.97438 * 15 14 12 18 18 N 1.31616 * 119.99872 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00102 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47235 * 89.99412 * 19 17 15 21 21 H 1.48505 * 109.46864 * 209.99568 * 19 17 15 22 22 H 1.48500 * 109.47110 * 329.99165 * 19 17 15 23 23 C 1.52994 * 109.47233 * 184.99889 * 12 11 10 24 24 C 1.53005 * 109.47233 * 179.97438 * 23 12 11 25 25 C 1.53005 * 109.47259 * 300.00265 * 23 12 11 26 26 C 1.34664 * 120.74916 * 359.48593 * 5 4 3 27 27 O 1.22059 * 119.98433 * 180.27912 * 26 5 4 28 28 C 1.36398 * 120.37297 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46685 * 269.98010 * 1 2 3 30 30 H 1.08993 * 109.47074 * 29.98152 * 1 2 3 31 31 H 1.09001 * 109.46749 * 149.98034 * 1 2 3 32 32 H 1.08007 * 120.02376 * 0.04094 * 3 2 1 33 33 H 1.07997 * 119.64987 * 180.26831 * 4 3 2 34 34 H 1.09002 * 109.47391 * 149.72358 * 6 5 4 35 35 H 1.09001 * 109.46813 * 29.72414 * 6 5 4 36 36 H 0.96995 * 120.00011 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.47487 * 300.00114 * 10 9 7 38 38 H 1.09002 * 109.47182 * 60.00342 * 10 9 7 39 39 H 1.09001 * 109.47289 * 299.99909 * 11 10 9 40 40 H 1.09002 * 109.47153 * 59.99993 * 11 10 9 41 41 H 0.96998 * 119.99860 * 25.00369 * 14 12 11 42 42 H 0.97003 * 120.00235 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.47484 * 60.00185 * 23 12 11 44 44 H 1.08998 * 109.47316 * 179.97438 * 24 23 12 45 45 H 1.08990 * 109.46781 * 300.00613 * 24 23 12 46 46 H 1.09001 * 109.46455 * 60.00196 * 24 23 12 47 47 H 1.08996 * 109.47362 * 60.00261 * 25 23 12 48 48 H 1.09002 * 109.46832 * 180.02562 * 25 23 12 49 49 H 1.09001 * 109.46827 * 299.99778 * 25 23 12 50 50 H 1.08009 * 120.34264 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1998 0.0047 5 7 4.2539 0.0275 -0.0009 6 6 5.7188 0.0444 -0.0009 7 6 6.2211 0.0501 -1.4217 8 8 5.4330 0.0414 -2.3435 9 7 7.5461 0.0658 -1.6680 10 6 8.0343 0.0719 -3.0492 11 6 9.5642 0.0894 -3.0492 12 6 10.0742 0.0951 -4.4917 13 1 9.6492 -0.7515 -5.0307 14 7 9.6723 1.3425 -5.1467 15 6 9.5430 1.3895 -6.5092 16 1 9.7368 0.5069 -7.1008 17 6 9.1617 2.5712 -7.1298 18 7 9.0369 2.6162 -8.4392 19 14 8.8257 4.0974 -6.1064 20 1 10.0812 4.8750 -5.9504 21 1 7.8058 4.9351 -6.7872 22 1 8.3229 3.6953 -4.7682 23 6 11.6003 -0.0131 -4.4935 24 6 12.1103 -0.0080 -5.9361 25 6 12.1969 1.1754 -3.7369 26 6 3.6018 -1.1507 -0.0009 27 8 4.2314 -2.1964 -0.0009 28 6 2.1967 -1.1768 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6821 2.1487 0.0007 33 1 4.1103 2.1344 0.0091 34 1 6.0924 -0.8414 0.5130 35 1 6.0718 0.9385 0.5129 36 1 8.1763 0.0731 -0.9307 37 1 7.6815 -0.8221 -3.5633 38 1 7.6605 0.9577 -3.5628 39 1 9.9174 0.9833 -2.5351 40 1 9.9377 -0.7966 -2.5357 41 1 9.4980 2.1350 -4.6153 42 1 8.7708 3.4421 -8.8730 43 1 11.8994 -0.9411 -4.0062 44 1 13.1976 -0.0847 -5.9374 45 1 11.6853 -0.8549 -6.4746 46 1 11.8113 0.9198 -6.4238 47 1 11.8336 1.1713 -2.7092 48 1 13.2842 1.0985 -3.7386 49 1 11.8979 2.1034 -4.2243 50 1 1.6684 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331224046.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:41 Heat of formation + Delta-G solvation = -34.670174 kcal Electronic energy + Delta-G solvation = -29016.563117 eV Core-core repulsion = 25044.439066 eV Total energy + Delta-G solvation = -3972.124051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.68606 -39.49697 -37.71527 -37.19873 -35.55620 -34.83795 -32.85641 -31.57253 -30.73130 -30.02343 -29.48266 -27.36855 -26.49849 -25.15188 -23.94057 -22.80428 -21.96571 -21.33971 -20.74427 -18.90327 -17.91258 -17.75245 -17.68091 -17.32298 -16.25260 -15.83131 -15.60673 -15.36316 -14.95183 -14.49470 -14.37739 -14.16813 -13.99563 -13.95274 -13.74743 -13.49811 -13.10718 -12.95787 -12.87616 -12.59480 -12.51865 -12.33557 -12.01238 -11.87901 -11.64902 -11.39538 -11.39159 -11.04022 -10.95441 -10.72234 -10.47872 -10.34073 -10.31687 -10.13392 -10.07589 -9.92700 -9.67499 -9.41001 -9.05113 -8.87005 -8.17672 -7.25094 -5.75360 -3.09784 0.59882 1.68496 2.23852 2.47947 3.08045 3.35940 3.37445 3.44871 3.52439 4.23102 4.31833 4.44048 4.53563 4.59276 4.72014 4.79223 4.97205 5.06016 5.07350 5.15918 5.21438 5.29225 5.38974 5.51176 5.53351 5.56867 5.69355 5.71257 5.79755 5.82738 5.87188 5.99015 6.13875 6.16748 6.26659 6.28330 6.30009 6.38048 6.47550 6.57713 6.64622 6.71685 6.78256 6.84359 6.96579 7.37675 7.39553 7.86588 8.01254 8.10556 8.43286 9.21606 9.93952 10.13390 11.42956 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.002617 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.799063 B =10695.154984 C =11887.757467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.016 3.984 3 C -0.229 4.229 4 C 0.145 3.855 5 N -0.481 5.481 6 C 0.071 3.929 7 C 0.495 3.505 8 O -0.522 6.522 9 N -0.724 5.724 10 C 0.121 3.879 11 C -0.137 4.137 12 C 0.188 3.812 13 H 0.058 0.942 14 N -0.743 5.743 15 C -0.234 4.234 16 H 0.093 0.907 17 C 0.004 3.996 18 N -0.933 5.933 19 Si 0.880 3.120 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.279 1.279 23 C -0.108 4.108 24 C -0.142 4.142 25 C -0.139 4.139 26 C 0.522 3.478 27 O -0.553 6.553 28 C -0.248 4.248 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.161 0.839 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.398 0.602 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.359 0.641 42 H 0.258 0.742 43 H 0.049 0.951 44 H 0.029 0.971 45 H 0.042 0.958 46 H 0.090 0.910 47 H 0.042 0.958 48 H 0.039 0.961 49 H 0.062 0.938 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.665 -2.138 23.639 25.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.012 3.988 3 C -0.252 4.252 4 C 0.018 3.982 5 N -0.192 5.192 6 C -0.055 4.055 7 C 0.278 3.722 8 O -0.397 6.397 9 N -0.376 5.376 10 C -0.001 4.001 11 C -0.175 4.175 12 C 0.078 3.922 13 H 0.076 0.924 14 N -0.386 5.386 15 C -0.364 4.364 16 H 0.111 0.889 17 C -0.191 4.191 18 N -0.581 5.581 19 Si 0.711 3.289 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.205 1.205 23 C -0.129 4.129 24 C -0.199 4.199 25 C -0.197 4.197 26 C 0.325 3.675 27 O -0.435 6.435 28 C -0.270 4.270 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.163 0.837 33 H 0.178 0.822 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.232 0.768 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.192 0.808 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.108 0.892 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.081 0.919 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.830 -2.889 22.680 24.509 hybrid contribution 0.149 1.337 0.862 1.598 sum -8.682 -1.552 23.542 25.140 Atomic orbital electron populations 1.20929 0.90339 1.03692 1.02981 1.20212 0.96802 0.92662 0.89132 1.20531 0.92346 0.98971 1.13394 1.21895 0.93667 0.89469 0.93165 1.45019 1.07163 1.07325 1.59706 1.21806 0.79886 1.07170 0.96665 1.20626 0.83191 0.77369 0.90990 1.90800 1.55125 1.48123 1.45615 1.46017 1.06254 1.75236 1.10117 1.21494 0.94379 1.03606 0.80629 1.22139 0.93571 1.02024 0.99814 1.20172 0.91756 0.90687 0.89592 0.92390 1.42777 1.82947 1.08007 1.04849 1.19053 1.38247 0.97869 0.81222 0.88878 1.24642 1.01857 0.97394 0.95241 1.69687 1.54289 1.26874 1.07298 0.86621 0.77778 0.84718 0.79791 1.21294 1.21947 1.20540 1.21657 0.97929 0.96737 0.96611 1.21852 0.97776 1.04254 0.96059 1.21768 0.99016 0.99947 0.98937 1.17082 0.89376 0.82397 0.78633 1.90951 1.69144 1.30271 1.53151 1.21911 0.92230 0.99581 1.13278 0.90147 0.90698 0.90774 0.83685 0.82152 0.85311 0.86148 0.76826 0.91358 0.90162 0.91392 0.91401 0.80769 0.93145 0.93215 0.95191 0.93873 0.89168 0.93896 0.94189 0.91939 0.83550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.03 36.01 0.36 -0.36 16 2 C 0.02 0.14 5.89 -104.55 -0.62 -0.48 16 3 C -0.23 -1.84 9.71 -39.87 -0.39 -2.22 16 4 C 0.14 1.24 10.28 -16.84 -0.17 1.07 16 5 N -0.48 -5.45 2.07 -121.06 -0.25 -5.70 16 6 C 0.07 0.66 5.82 -5.19 -0.03 0.63 16 7 C 0.49 6.77 7.90 -10.98 -0.09 6.68 16 8 O -0.52 -9.95 16.43 5.56 0.09 -9.86 16 9 N -0.72 -8.57 5.56 -60.30 -0.33 -8.90 16 10 C 0.12 1.85 5.56 -4.04 -0.02 1.83 16 11 C -0.14 -1.85 4.36 -26.73 -0.12 -1.97 16 12 C 0.19 3.28 2.19 -67.93 -0.15 3.13 16 13 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 14 N -0.74 -16.01 3.49 -53.42 -0.19 -16.20 16 15 C -0.23 -6.18 8.05 -15.06 -0.12 -6.30 16 16 H 0.09 2.67 7.63 -52.48 -0.40 2.27 16 17 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 18 N -0.93 -28.86 13.97 55.49 0.78 -28.08 16 19 Si 0.88 21.71 27.74 -169.99 -4.71 17.00 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 22 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 23 C -0.11 -1.74 2.80 -90.62 -0.25 -1.99 16 24 C -0.14 -2.59 8.27 37.16 0.31 -2.29 16 25 C -0.14 -2.08 8.69 37.16 0.32 -1.76 16 26 C 0.52 7.44 7.40 -15.45 -0.11 7.33 16 27 O -0.55 -9.79 16.64 4.86 0.08 -9.71 16 28 C -0.25 -2.90 9.65 -39.38 -0.38 -3.28 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 31 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.16 0.84 8.03 -52.49 -0.42 0.42 16 34 H 0.13 1.14 7.39 -51.93 -0.38 0.76 16 35 H 0.12 0.56 8.01 -51.93 -0.42 0.14 16 36 H 0.40 3.12 8.47 -40.82 -0.35 2.77 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.50 7.75 -51.93 -0.40 1.09 16 39 H 0.07 0.86 6.71 -51.93 -0.35 0.51 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.36 7.75 5.66 -40.82 -0.23 7.52 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.09 1.98 6.01 -51.93 -0.31 1.66 16 47 H 0.04 0.55 6.54 -51.93 -0.34 0.21 16 48 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 1.08 7.60 -51.93 -0.39 0.68 16 50 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 404.21 15.07 6.09 6.09 Total: -1.00 -37.51 404.21 -8.23 -45.74 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -8.23 Total: 9.56 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.55 Total: 0.05 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.00 Total: -58.88 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.17 Total: -19.56 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.51 -8.23 -45.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331224046.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.075 kcal (2) G-P(sol) polarization free energy of solvation -37.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds