Wall clock time and date at job start Tue Mar 31 2020 19:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40198 * 120.36635 * 2 1 4 4 C 1.35352 * 119.94910 * 179.76998 * 3 2 1 5 5 N 1.35758 * 120.70194 * 0.50916 * 4 3 2 6 6 C 1.46499 * 119.62714 * 179.76327 * 5 4 3 7 7 C 1.50701 * 109.46992 * 269.72368 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99566 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.46983 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47452 * 179.97438 * 11 10 9 13 13 H 1.08990 * 109.46781 * 305.00501 * 12 11 10 14 14 N 1.46507 * 109.46689 * 64.99924 * 12 11 10 15 15 C 1.36938 * 119.99746 * 204.99815 * 14 12 11 16 16 H 1.08003 * 119.99690 * 0.02562 * 15 14 12 17 17 C 1.38809 * 119.99812 * 179.97438 * 15 14 12 18 18 N 1.31616 * 119.99872 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00102 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47235 * 89.99412 * 19 17 15 21 21 H 1.48505 * 109.46864 * 209.99568 * 19 17 15 22 22 H 1.48500 * 109.47110 * 329.99165 * 19 17 15 23 23 C 1.52994 * 109.47233 * 184.99889 * 12 11 10 24 24 C 1.53005 * 109.47233 * 179.97438 * 23 12 11 25 25 C 1.53005 * 109.47259 * 300.00265 * 23 12 11 26 26 C 1.34664 * 120.74916 * 359.48593 * 5 4 3 27 27 O 1.22059 * 119.98433 * 180.27912 * 26 5 4 28 28 C 1.36398 * 120.37297 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46685 * 269.98010 * 1 2 3 30 30 H 1.08993 * 109.47074 * 29.98152 * 1 2 3 31 31 H 1.09001 * 109.46749 * 149.98034 * 1 2 3 32 32 H 1.08007 * 120.02376 * 0.04094 * 3 2 1 33 33 H 1.07997 * 119.64987 * 180.26831 * 4 3 2 34 34 H 1.09002 * 109.47391 * 149.72358 * 6 5 4 35 35 H 1.09001 * 109.46813 * 29.72414 * 6 5 4 36 36 H 0.96995 * 120.00011 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.47487 * 300.00114 * 10 9 7 38 38 H 1.09002 * 109.47182 * 60.00342 * 10 9 7 39 39 H 1.09001 * 109.47289 * 299.99909 * 11 10 9 40 40 H 1.09002 * 109.47153 * 59.99993 * 11 10 9 41 41 H 0.96998 * 119.99860 * 25.00369 * 14 12 11 42 42 H 0.97003 * 120.00235 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.47484 * 60.00185 * 23 12 11 44 44 H 1.08998 * 109.47316 * 179.97438 * 24 23 12 45 45 H 1.08990 * 109.46781 * 300.00613 * 24 23 12 46 46 H 1.09001 * 109.46455 * 60.00196 * 24 23 12 47 47 H 1.08996 * 109.47362 * 60.00261 * 25 23 12 48 48 H 1.09002 * 109.46832 * 180.02562 * 25 23 12 49 49 H 1.09001 * 109.46827 * 299.99778 * 25 23 12 50 50 H 1.08009 * 120.34264 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1998 0.0047 5 7 4.2539 0.0275 -0.0009 6 6 5.7188 0.0444 -0.0009 7 6 6.2211 0.0501 -1.4217 8 8 5.4330 0.0414 -2.3435 9 7 7.5461 0.0658 -1.6680 10 6 8.0343 0.0719 -3.0492 11 6 9.5642 0.0894 -3.0492 12 6 10.0742 0.0951 -4.4917 13 1 9.6492 -0.7515 -5.0307 14 7 9.6723 1.3425 -5.1467 15 6 9.5430 1.3895 -6.5092 16 1 9.7368 0.5069 -7.1008 17 6 9.1617 2.5712 -7.1298 18 7 9.0369 2.6162 -8.4392 19 14 8.8257 4.0974 -6.1064 20 1 10.0812 4.8750 -5.9504 21 1 7.8058 4.9351 -6.7872 22 1 8.3229 3.6953 -4.7682 23 6 11.6003 -0.0131 -4.4935 24 6 12.1103 -0.0080 -5.9361 25 6 12.1969 1.1754 -3.7369 26 6 3.6018 -1.1507 -0.0009 27 8 4.2314 -2.1964 -0.0009 28 6 2.1967 -1.1768 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6821 2.1487 0.0007 33 1 4.1103 2.1344 0.0091 34 1 6.0924 -0.8414 0.5130 35 1 6.0718 0.9385 0.5129 36 1 8.1763 0.0731 -0.9307 37 1 7.6815 -0.8221 -3.5633 38 1 7.6605 0.9577 -3.5628 39 1 9.9174 0.9833 -2.5351 40 1 9.9377 -0.7966 -2.5357 41 1 9.4980 2.1350 -4.6153 42 1 8.7708 3.4421 -8.8730 43 1 11.8994 -0.9411 -4.0062 44 1 13.1976 -0.0847 -5.9374 45 1 11.6853 -0.8549 -6.4746 46 1 11.8113 0.9198 -6.4238 47 1 11.8336 1.1713 -2.7092 48 1 13.2842 1.0985 -3.7386 49 1 11.8979 2.1034 -4.2243 50 1 1.6684 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331224046.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:40 Heat of formation + Delta-G solvation = -61.766594 kcal Electronic energy + Delta-G solvation = -29017.738106 eV Core-core repulsion = 25044.439066 eV Total energy + Delta-G solvation = -3973.299040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.53465 -40.59916 -39.15716 -38.12197 -36.39647 -36.01708 -34.75428 -32.92363 -32.00482 -31.16173 -30.38016 -28.29320 -27.78148 -26.51474 -24.68123 -24.60909 -22.91183 -22.54264 -21.76250 -20.46260 -19.48321 -18.73704 -18.55254 -18.43212 -17.08755 -17.06979 -16.74030 -16.44140 -16.33104 -15.88153 -15.51763 -15.27310 -15.17144 -15.04680 -14.81856 -14.63607 -14.36943 -14.17690 -14.15138 -13.65252 -13.41972 -13.29520 -13.01341 -12.96743 -12.88643 -12.77844 -12.62291 -12.48939 -12.47106 -12.11990 -12.05497 -11.96162 -11.74892 -11.42303 -11.24312 -11.19919 -11.11240 -10.85457 -10.58550 -10.20106 -9.20354 -9.00909 -7.94612 -5.24415 -0.14497 0.89394 1.35649 1.40507 1.43567 1.46496 1.46855 2.13595 2.52610 2.67833 3.36910 3.57652 3.65393 3.66291 3.72112 3.86750 3.91496 4.06319 4.11820 4.15683 4.23823 4.32268 4.37268 4.38656 4.42349 4.62964 4.76474 4.77116 4.81304 4.86786 4.89066 4.98310 5.02316 5.08513 5.12338 5.18520 5.22377 5.29692 5.34421 5.39541 5.43285 5.46901 5.63375 5.64354 5.81522 5.89751 6.02683 6.29026 6.43713 6.94166 7.14632 7.16832 7.93064 8.11432 9.27665 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.002617 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.799063 B =10695.154984 C =11887.757467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.032 3.968 3 C -0.233 4.233 4 C 0.139 3.861 5 N -0.485 5.485 6 C 0.075 3.925 7 C 0.489 3.511 8 O -0.585 6.585 9 N -0.705 5.705 10 C 0.129 3.871 11 C -0.120 4.120 12 C 0.178 3.822 13 H 0.034 0.966 14 N -0.741 5.741 15 C -0.199 4.199 16 H 0.058 0.942 17 C -0.073 4.073 18 N -0.991 5.991 19 Si 0.947 3.053 20 H -0.279 1.279 21 H -0.307 1.307 22 H -0.253 1.253 23 C -0.102 4.102 24 C -0.140 4.140 25 C -0.136 4.136 26 C 0.502 3.498 27 O -0.610 6.610 28 C -0.293 4.293 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.181 0.819 33 H 0.202 0.798 34 H 0.134 0.866 35 H 0.180 0.820 36 H 0.423 0.577 37 H 0.039 0.961 38 H 0.044 0.956 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.364 0.636 42 H 0.252 0.748 43 H 0.083 0.917 44 H 0.051 0.949 45 H 0.028 0.972 46 H 0.046 0.954 47 H 0.074 0.926 48 H 0.054 0.946 49 H 0.034 0.966 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.139 -0.256 28.137 29.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.028 3.972 3 C -0.255 4.255 4 C 0.013 3.987 5 N -0.194 5.194 6 C -0.050 4.050 7 C 0.275 3.725 8 O -0.464 6.464 9 N -0.358 5.358 10 C 0.005 3.995 11 C -0.158 4.158 12 C 0.070 3.930 13 H 0.052 0.948 14 N -0.385 5.385 15 C -0.330 4.330 16 H 0.076 0.924 17 C -0.263 4.263 18 N -0.643 5.643 19 Si 0.776 3.224 20 H -0.205 1.205 21 H -0.235 1.235 22 H -0.177 1.177 23 C -0.123 4.123 24 C -0.197 4.197 25 C -0.193 4.193 26 C 0.308 3.692 27 O -0.498 6.498 28 C -0.314 4.314 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.198 0.802 33 H 0.219 0.781 34 H 0.152 0.848 35 H 0.198 0.802 36 H 0.261 0.739 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.197 0.803 42 H 0.061 0.939 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.048 0.952 46 H 0.065 0.935 47 H 0.093 0.907 48 H 0.073 0.927 49 H 0.053 0.947 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.257 -1.005 27.291 28.531 hybrid contribution -0.021 0.681 -0.558 0.881 sum -8.278 -0.324 26.734 27.988 Atomic orbital electron populations 1.21039 0.88009 1.04457 1.04429 1.20649 0.98551 0.92128 0.85886 1.21068 0.92566 0.99827 1.12006 1.22691 0.94448 0.89763 0.91825 1.45085 1.08148 1.07393 1.58738 1.22056 0.78917 1.10243 0.93740 1.21453 0.83043 0.75722 0.92256 1.90777 1.56724 1.51012 1.47922 1.45757 1.06438 1.74128 1.09474 1.21155 0.95656 1.00556 0.82107 1.22007 0.91795 1.04915 0.97084 1.20427 0.93095 0.87839 0.91646 0.94791 1.42734 1.82911 1.09856 1.02950 1.18950 1.34666 0.96097 0.83282 0.92435 1.25402 1.03602 1.01003 0.96297 1.69883 1.57445 1.27426 1.09533 0.85509 0.77372 0.80433 0.79070 1.20499 1.23477 1.17732 1.21590 0.96135 0.99217 0.95371 1.21782 0.99198 1.01241 0.97499 1.21734 0.99995 0.97526 1.00020 1.17491 0.90298 0.82711 0.78703 1.90890 1.70205 1.32160 1.56584 1.21916 0.91708 1.00776 1.17046 0.88131 0.88955 0.90983 0.80183 0.78115 0.84816 0.80236 0.73913 0.94265 0.93724 0.89004 0.87705 0.80278 0.93888 0.89869 0.93036 0.95240 0.93520 0.90724 0.92737 0.94694 0.84184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 10.03 71.24 0.71 -0.45 16 2 C 0.03 0.53 5.89 -19.82 -0.12 0.41 16 3 C -0.23 -2.99 9.71 22.08 0.21 -2.78 16 4 C 0.14 1.94 10.28 83.42 0.86 2.79 16 5 N -0.48 -10.24 2.07 -655.07 -1.36 -11.60 16 6 C 0.08 1.20 5.82 85.63 0.50 1.70 16 7 C 0.49 12.65 7.90 87.66 0.69 13.34 16 8 O -0.58 -22.57 16.43 -3.03 -0.05 -22.62 16 9 N -0.70 -14.80 5.56 -463.06 -2.57 -17.37 16 10 C 0.13 3.79 5.56 86.38 0.48 4.27 16 11 C -0.12 -2.82 4.36 30.60 0.13 -2.68 16 12 C 0.18 5.98 2.19 44.99 0.10 6.08 16 13 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 14 N -0.74 -31.75 3.49 -322.94 -1.13 -32.88 16 15 C -0.20 -10.87 8.05 84.03 0.68 -10.20 16 16 H 0.06 3.51 7.63 -2.91 -0.02 3.49 16 17 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 18 N -0.99 -64.34 13.97 21.65 0.30 -64.03 16 19 Si 0.95 45.56 27.74 68.60 1.90 47.46 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 22 H -0.25 -10.86 6.52 99.48 0.65 -10.21 16 23 C -0.10 -3.02 2.80 -10.79 -0.03 -3.05 16 24 C -0.14 -5.07 8.27 71.98 0.60 -4.47 16 25 C -0.14 -3.51 8.69 71.98 0.63 -2.89 16 26 C 0.50 14.73 7.40 84.82 0.63 15.36 16 27 O -0.61 -22.90 16.64 -5.51 -0.09 -22.99 16 28 C -0.29 -7.10 9.65 22.40 0.22 -6.89 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.59 8.10 -2.39 -0.02 0.57 16 31 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 32 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 33 H 0.20 1.05 8.03 -2.91 -0.02 1.03 16 34 H 0.13 2.09 7.39 -2.39 -0.02 2.07 16 35 H 0.18 0.66 8.01 -2.39 -0.02 0.64 16 36 H 0.42 4.68 8.47 -92.71 -0.79 3.89 16 37 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.04 1.64 7.75 -2.39 -0.02 1.62 16 39 H 0.09 1.81 6.71 -2.39 -0.02 1.79 16 40 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.36 15.07 5.66 -92.71 -0.52 14.54 16 42 H 0.25 15.80 8.31 -92.71 -0.77 15.03 16 43 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.05 2.09 6.01 -2.39 -0.01 2.08 16 47 H 0.07 1.47 6.54 -2.39 -0.02 1.45 16 48 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.03 1.10 7.60 -2.39 -0.02 1.08 16 50 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -92.60 404.21 3.33 -89.27 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: -0.42 Total: 28.01 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 6.75 Total: 6.74 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -4.76 Total: -125.88 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -0.14 Total: -45.61 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.46 kcal Total: -92.60 3.33 -89.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331224046.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.504 kcal (2) G-P(sol) polarization free energy of solvation -92.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds