Wall clock time and date at job start Tue Mar 31 2020 20:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34895 * 116.99971 * 2 1 4 4 O 1.21626 * 119.99561 * 0.02562 * 3 2 1 5 5 C 1.46491 * 120.00195 * 179.97438 * 3 2 1 6 6 N 1.37702 * 126.26086 * 0.02828 * 5 3 2 7 7 H 0.96998 * 125.63293 * 359.95705 * 6 5 3 8 8 C 1.34959 * 108.72616 * 179.97438 * 6 5 3 9 9 C 1.50702 * 125.50294 * 179.97438 * 8 6 5 10 10 N 1.46900 * 109.46911 * 85.02424 * 9 8 6 11 11 C 1.46900 * 111.00349 * 45.69880 * 10 9 8 12 12 C 1.53236 * 109.34217 * 187.25498 * 11 10 9 13 13 H 1.08996 * 109.62811 * 65.87308 * 12 11 10 14 14 C 1.53001 * 109.62738 * 186.45828 * 12 11 10 15 15 N 1.47083 * 108.51506 * 306.16516 * 12 11 10 16 16 C 1.36939 * 120.88121 * 231.20320 * 15 12 11 17 17 H 1.08001 * 120.00038 * 126.98118 * 16 15 12 18 18 C 1.38809 * 120.00182 * 306.98608 * 16 15 12 19 19 N 1.31618 * 120.00305 * 159.03285 * 18 16 15 20 20 Si 1.86802 * 120.00043 * 339.03667 * 18 16 15 21 21 H 1.48497 * 109.47602 * 95.33226 * 20 18 16 22 22 H 1.48500 * 109.47027 * 215.33652 * 20 18 16 23 23 H 1.48502 * 109.46999 * 335.32855 * 20 18 16 24 24 C 1.47082 * 118.23817 * 51.19210 * 15 12 11 25 25 H 1.08993 * 109.63087 * 68.51915 * 24 15 12 26 26 C 1.53000 * 109.62687 * 189.10193 * 24 15 12 27 27 C 1.46899 * 110.99850 * 169.99742 * 10 9 8 28 28 C 1.35479 * 108.98862 * 0.24061 * 8 6 5 29 29 C 1.37989 * 126.26532 * 179.97438 * 5 3 2 30 30 C 1.50704 * 126.51556 * 0.06201 * 29 5 3 31 31 H 1.08996 * 109.46733 * 59.99717 * 1 2 3 32 32 H 1.08993 * 109.46944 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46994 * 299.99545 * 1 2 3 34 34 H 1.09001 * 109.46890 * 205.02209 * 9 8 6 35 35 H 1.09002 * 109.47017 * 325.02338 * 9 8 6 36 36 H 1.09001 * 109.48843 * 307.21467 * 11 10 9 37 37 H 1.09002 * 109.49167 * 67.28550 * 11 10 9 38 38 H 1.09001 * 109.46907 * 187.09639 * 14 12 11 39 39 H 1.08997 * 109.47142 * 307.09539 * 14 12 11 40 40 H 1.09003 * 109.47212 * 67.09674 * 14 12 11 41 41 H 0.96998 * 120.00220 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.47377 * 179.02414 * 26 24 15 43 43 H 1.09005 * 109.47353 * 299.02687 * 26 24 15 44 44 H 1.09001 * 109.47208 * 59.02426 * 26 24 15 45 45 H 1.09005 * 109.49415 * 292.70843 * 27 10 9 46 46 H 1.09007 * 109.49299 * 52.78479 * 27 10 9 47 47 H 1.07997 * 126.07959 * 179.72439 * 28 8 6 48 48 H 1.09001 * 109.47297 * 89.99297 * 30 29 5 49 49 H 1.08995 * 109.47213 * 209.99583 * 30 29 5 50 50 H 1.09003 * 109.47074 * 329.99746 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4020 2.2219 0.0005 5 6 3.5274 1.2787 0.0006 6 7 4.3989 0.2125 0.0006 7 1 4.1461 -0.7240 0.0008 8 6 5.6627 0.6859 0.0006 9 6 6.9126 -0.1559 0.0012 10 7 7.2519 -0.5296 -1.3784 11 6 7.1553 0.6288 -2.2766 12 6 7.3376 0.1642 -3.7254 13 1 6.5036 -0.4762 -4.0123 14 6 7.3991 1.3807 -4.6513 15 7 8.5959 -0.5918 -3.8186 16 6 9.5295 -0.2877 -4.7732 17 1 10.5532 -0.0979 -4.4862 18 6 9.1601 -0.2233 -6.1096 19 7 9.9009 0.4481 -6.9656 20 14 7.6114 -1.0895 -6.6934 21 1 6.4812 -0.1263 -6.7088 22 1 7.8277 -1.6206 -8.0632 23 1 7.2941 -2.2103 -5.7724 24 6 8.8249 -1.6828 -2.8592 25 1 8.1338 -2.5007 -3.0629 26 6 10.2666 -2.1804 -2.9813 27 6 8.5839 -1.1455 -1.4445 28 6 5.6261 2.0402 0.0060 29 6 4.2842 2.4325 0.0001 30 6 3.7633 3.8466 0.0003 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 7.7341 0.4137 0.4358 35 1 6.7435 -1.0570 0.5906 36 1 6.1764 1.0951 -2.1646 37 1 7.9330 1.3499 -2.0251 38 1 7.4019 1.0475 -5.6892 39 1 6.5304 2.0152 -4.4757 40 1 8.3088 1.9459 -4.4487 41 1 9.6425 0.4935 -7.8995 42 1 10.4386 -2.9769 -2.2575 43 1 10.4353 -2.5619 -3.9884 44 1 10.9531 -1.3567 -2.7852 45 1 9.3418 -0.3996 -1.2046 46 1 8.6412 -1.9659 -0.7291 47 1 6.4814 2.6996 0.0116 48 1 3.6381 4.1876 1.0280 49 1 4.4726 4.4951 -0.5138 50 1 2.8023 3.8799 -0.5131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331567481.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:20 Heat of formation + Delta-G solvation = -5.378672 kcal Electronic energy + Delta-G solvation = -30462.326263 eV Core-core repulsion = 26491.472387 eV Total energy + Delta-G solvation = -3970.853876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.73758 -40.08293 -38.58432 -36.63160 -35.20494 -32.98812 -32.72228 -31.75051 -30.57269 -28.40199 -28.01989 -27.27100 -26.26141 -25.98301 -24.40102 -22.45676 -21.37815 -20.63062 -20.28687 -19.44887 -19.17323 -18.51605 -17.00984 -16.63277 -16.52025 -15.79376 -15.61405 -14.80112 -14.77110 -14.54251 -14.28959 -14.11719 -13.77192 -13.42627 -13.25662 -13.14900 -13.07263 -12.75432 -12.57466 -12.49517 -12.38348 -12.27020 -12.11361 -11.97819 -11.65464 -11.55679 -11.11274 -11.08099 -11.06333 -10.73704 -10.62105 -10.45423 -10.19754 -10.13783 -9.95306 -9.65866 -9.39639 -8.83748 -8.40972 -8.33848 -7.96169 -6.44669 -6.00617 -3.56687 1.07672 2.43549 2.48206 2.98468 3.02805 3.35513 3.48171 3.58412 4.25251 4.54052 4.63385 4.70161 4.82574 4.91024 4.93529 4.98799 5.07192 5.23815 5.26110 5.34493 5.47313 5.61566 5.66281 5.72894 5.74019 5.80039 5.92327 5.99350 5.99993 6.04785 6.07163 6.20773 6.30440 6.32131 6.34371 6.45325 6.47209 6.53898 6.63881 6.74026 6.83552 6.98788 7.05289 7.15038 7.26707 7.33550 7.40800 7.50914 7.58256 8.12558 8.53709 9.04894 9.70976 10.27834 11.12519 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014119 B = 0.003342 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.626348 B = 8377.076044 C = 8858.748884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.366 6.366 3 C 0.538 3.462 4 O -0.502 6.502 5 C -0.059 4.059 6 N -0.513 5.513 7 H 0.424 0.576 8 C 0.091 3.909 9 C 0.110 3.890 10 N -0.534 5.534 11 C 0.046 3.954 12 C 0.171 3.829 13 H 0.027 0.973 14 C -0.143 4.143 15 N -0.599 5.599 16 C -0.269 4.269 17 H 0.071 0.929 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.871 3.129 21 H -0.281 1.281 22 H -0.302 1.302 23 H -0.269 1.269 24 C 0.169 3.831 25 H 0.032 0.968 26 C -0.130 4.130 27 C 0.048 3.952 28 C -0.208 4.208 29 C -0.054 4.054 30 C -0.093 4.093 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.036 0.964 38 H 0.067 0.933 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.263 0.737 42 H 0.037 0.963 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.035 0.965 46 H 0.064 0.936 47 H 0.146 0.854 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.474 -0.670 16.863 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.283 6.283 3 C 0.385 3.615 4 O -0.390 6.390 5 C -0.169 4.169 6 N -0.108 5.108 7 H 0.262 0.738 8 C -0.030 4.030 9 C -0.018 4.018 10 N -0.259 5.259 11 C -0.083 4.083 12 C 0.065 3.935 13 H 0.045 0.955 14 C -0.201 4.201 15 N -0.325 5.325 16 C -0.398 4.398 17 H 0.088 0.912 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.700 3.300 21 H -0.208 1.208 22 H -0.230 1.230 23 H -0.193 1.193 24 C 0.063 3.937 25 H 0.050 0.950 26 C -0.188 4.188 27 C -0.081 4.081 28 C -0.232 4.232 29 C -0.063 4.063 30 C -0.150 4.150 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.082 0.918 47 H 0.163 0.837 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.095 -0.832 16.521 21.098 hybrid contribution -0.659 -0.359 -0.224 0.783 sum -13.754 -1.191 16.297 21.358 Atomic orbital electron populations 1.23248 0.75759 1.03693 1.02675 1.86572 1.23872 1.32963 1.84923 1.19809 0.86989 0.81631 0.73112 1.90863 1.65438 1.35624 1.47114 1.18958 0.86175 0.88053 1.23744 1.41674 1.05115 1.08769 1.55224 0.73813 1.20363 0.85383 0.94084 1.03124 1.20779 0.91325 0.97260 0.92436 1.62129 1.29404 1.29765 1.04592 1.22782 1.00262 0.90768 0.94476 1.20677 0.89151 0.92372 0.91281 0.95548 1.22019 1.00367 0.96959 1.00716 1.44511 1.18436 1.33686 1.35877 1.18413 0.92064 1.44561 0.84719 0.91170 1.25844 0.96336 0.96203 0.96153 1.69879 1.39906 1.39811 1.03882 0.87170 0.84382 0.81273 0.77199 1.20774 1.23005 1.19324 1.20623 0.95181 0.90501 0.87362 0.94988 1.21701 0.96164 0.99497 1.01488 1.22701 0.87684 0.97817 0.99867 1.20622 0.96471 0.93217 1.12914 1.19932 0.92207 0.93848 1.00291 1.20388 1.01812 0.90532 1.02234 0.91708 0.88075 0.91829 0.92215 0.90029 0.91107 0.94599 0.91445 0.94777 0.91242 0.92719 0.94388 0.91511 0.92699 0.94644 0.91802 0.83652 0.91364 0.91373 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.38 16 2 O -0.37 -4.10 10.58 -41.03 -0.43 -4.54 16 3 C 0.54 7.08 7.93 34.06 0.27 7.35 16 4 O -0.50 -7.37 14.61 -19.36 -0.28 -7.65 16 5 C -0.06 -0.77 7.10 -82.00 -0.58 -1.36 16 6 N -0.51 -6.03 6.07 -5.82 -0.04 -6.07 16 7 H 0.42 4.21 8.96 -40.82 -0.37 3.85 16 8 C 0.09 1.12 5.04 -82.20 -0.41 0.71 16 9 C 0.11 1.32 5.80 -4.98 -0.03 1.29 16 10 N -0.53 -8.31 4.77 -235.76 -1.13 -9.44 16 11 C 0.05 0.82 4.32 -3.70 -0.02 0.80 16 12 C 0.17 3.68 2.45 -67.49 -0.17 3.52 16 13 H 0.03 0.62 7.37 -51.93 -0.38 0.23 16 14 C -0.14 -3.17 7.82 37.16 0.29 -2.88 16 15 N -0.60 -13.78 2.27 -157.01 -0.36 -14.13 16 16 C -0.27 -7.11 7.22 -15.06 -0.11 -7.22 16 17 H 0.07 2.03 7.31 -52.49 -0.38 1.65 16 18 C 0.06 1.57 3.99 -17.43 -0.07 1.50 16 19 N -0.90 -26.24 13.97 55.49 0.78 -25.46 16 20 Si 0.87 22.15 24.57 -169.99 -4.18 17.97 16 21 H -0.28 -6.99 6.38 56.52 0.36 -6.63 16 22 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 23 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.17 3.32 3.66 -67.49 -0.25 3.07 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 26 C -0.13 -2.38 8.19 37.16 0.30 -2.08 16 27 C 0.05 0.78 4.87 -3.70 -0.02 0.76 16 28 C -0.21 -2.61 9.39 -39.98 -0.38 -2.99 16 29 C -0.05 -0.71 6.22 -104.13 -0.65 -1.35 16 30 C -0.09 -1.06 9.83 36.01 0.35 -0.71 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.22 5.76 -51.93 -0.30 0.92 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.66 3.23 -51.93 -0.17 1.49 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.63 7.68 -51.93 -0.40 1.23 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.35 7.69 -51.93 -0.40 0.95 16 44 H 0.05 1.04 7.56 -51.93 -0.39 0.64 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 47 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.08 0.98 6.50 -51.93 -0.34 0.64 16 LS Contribution 385.98 15.07 5.82 5.82 Total: -1.00 -31.00 385.98 -8.42 -39.42 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.22 Total: 2.29 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -0.38 Total: 1.79 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.74 Total: -55.10 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.72 Total: -12.19 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.18 Total: 17.97 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.00 -8.42 -39.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331567481.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.039 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds