Wall clock time and date at job start Tue Mar 31 2020 20:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34895 * 117.00028 * 2 1 4 4 O 1.21627 * 119.99722 * 359.97438 * 3 2 1 5 5 C 1.46488 * 119.99988 * 179.97438 * 3 2 1 6 6 N 1.37693 * 126.26276 * 0.02562 * 5 3 2 7 7 H 0.96996 * 125.63763 * 359.97438 * 6 5 3 8 8 C 1.34962 * 108.72663 * 180.02562 * 6 5 3 9 9 C 1.50704 * 125.50743 * 179.97438 * 8 6 5 10 10 N 1.46898 * 109.47345 * 85.02288 * 9 8 6 11 11 C 1.46894 * 111.00306 * 170.00217 * 10 9 8 12 12 C 1.53239 * 109.36177 * 172.76141 * 11 10 9 13 13 H 1.09004 * 109.62595 * 173.72189 * 12 11 10 14 14 C 1.52999 * 109.62945 * 294.10108 * 12 11 10 15 15 N 1.47079 * 108.52087 * 53.81779 * 12 11 10 16 16 C 1.36937 * 120.87944 * 128.79393 * 15 12 11 17 17 H 1.07999 * 119.99885 * 308.22156 * 16 15 12 18 18 C 1.38809 * 120.00068 * 128.22058 * 16 15 12 19 19 N 1.31622 * 120.00017 * 157.93214 * 18 16 15 20 20 Si 1.86795 * 120.00032 * 337.93294 * 18 16 15 21 21 H 1.48506 * 109.47118 * 95.30697 * 20 18 16 22 22 H 1.48503 * 109.47494 * 215.30392 * 20 18 16 23 23 H 1.48500 * 109.47222 * 335.30565 * 20 18 16 24 24 C 1.47071 * 118.23642 * 308.81034 * 15 12 11 25 25 H 1.08998 * 109.63408 * 291.28290 * 24 15 12 26 26 C 1.52999 * 109.62776 * 170.89644 * 24 15 12 27 27 C 1.46898 * 111.01779 * 45.68230 * 10 9 8 28 28 C 1.35480 * 108.98785 * 0.24236 * 8 6 5 29 29 C 1.37998 * 126.25988 * 180.02562 * 5 3 2 30 30 C 1.50700 * 126.52047 * 359.97438 * 29 5 3 31 31 H 1.08995 * 109.47372 * 300.00517 * 1 2 3 32 32 H 1.09007 * 109.46894 * 60.00235 * 1 2 3 33 33 H 1.08997 * 109.46636 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46722 * 325.02650 * 9 8 6 35 35 H 1.09001 * 109.46979 * 205.02836 * 9 8 6 36 36 H 1.09004 * 109.49568 * 52.78442 * 11 10 9 37 37 H 1.09004 * 109.49097 * 292.73342 * 11 10 9 38 38 H 1.09005 * 109.46563 * 60.00707 * 14 12 11 39 39 H 1.09005 * 109.47020 * 179.97438 * 14 12 11 40 40 H 1.08996 * 109.47542 * 300.00634 * 14 12 11 41 41 H 0.97007 * 119.99777 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.47221 * 67.53544 * 26 24 15 43 43 H 1.08998 * 109.47280 * 187.53337 * 26 24 15 44 44 H 1.09005 * 109.47262 * 307.53912 * 26 24 15 45 45 H 1.08994 * 109.47345 * 67.27030 * 27 10 9 46 46 H 1.09005 * 109.51590 * 307.21173 * 27 10 9 47 47 H 1.08006 * 126.08096 * 179.75353 * 28 8 6 48 48 H 1.09007 * 109.47401 * 89.99383 * 30 29 5 49 49 H 1.08994 * 109.47445 * 209.99967 * 30 29 5 50 50 H 1.09006 * 109.46697 * 330.00013 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2219 -0.0005 5 6 3.5273 1.2786 0.0006 6 7 4.3987 0.2125 0.0006 7 1 4.1461 -0.7240 0.0007 8 6 5.6626 0.6859 0.0018 9 6 6.9126 -0.1559 0.0028 10 7 7.2529 -0.5289 -1.3767 11 6 8.5849 -1.1447 -1.4422 12 6 8.8276 -1.6812 -2.8570 13 1 9.8539 -2.0385 -2.9420 14 6 7.8582 -2.8294 -3.1446 15 7 8.5992 -0.5897 -3.8160 16 6 9.5338 -0.2848 -4.7694 17 1 10.5611 -0.1144 -4.4834 18 6 9.1606 -0.1948 -6.1033 19 7 9.8966 0.4967 -6.9474 20 14 7.6139 -1.0552 -6.7006 21 1 6.4798 -0.0965 -6.6929 22 1 7.8284 -1.5571 -8.0817 23 1 7.3037 -2.1961 -5.8020 24 6 7.3408 0.1658 -3.7237 25 1 6.5075 -0.4736 -4.0152 26 6 7.4028 1.3828 -4.6488 27 6 7.1566 0.6296 -2.2748 28 6 5.6260 2.0402 0.0079 29 6 4.2842 2.4325 0.0011 30 6 3.7633 3.8466 0.0007 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3632 -1.0277 0.0005 34 1 6.7430 -1.0573 0.5916 35 1 7.7337 0.4135 0.4384 36 1 8.6418 -1.9656 -0.7272 37 1 9.3426 -0.3991 -1.2010 38 1 6.8330 -2.4677 -3.0656 39 1 8.0327 -3.2087 -4.1515 40 1 8.0179 -3.6295 -2.4218 41 1 9.6355 0.5599 -7.8796 42 1 7.4165 1.0499 -5.6867 43 1 6.5289 2.0120 -4.4806 44 1 8.3075 1.9534 -4.4385 45 1 7.9338 1.3507 -2.0222 46 1 6.1776 1.0959 -2.1638 47 1 6.4814 2.6996 0.0140 48 1 3.6369 4.1876 1.0284 49 1 4.4732 4.4952 -0.5125 50 1 2.8030 3.8799 -0.5138 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331567484.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:24 Heat of formation + Delta-G solvation = -3.886675 kcal Electronic energy + Delta-G solvation = -30642.399426 eV Core-core repulsion = 26671.610248 eV Total energy + Delta-G solvation = -3970.789178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.73609 -40.08419 -38.65611 -36.63100 -35.14221 -32.89894 -32.65827 -31.68721 -30.52396 -28.52771 -28.10860 -27.30672 -26.25315 -25.99453 -24.09258 -22.65502 -21.57553 -21.02004 -20.40244 -19.39872 -18.55523 -18.44350 -17.00901 -16.74726 -16.62036 -15.79054 -15.60697 -14.82677 -14.60497 -14.50525 -14.31668 -14.02406 -13.88994 -13.31656 -13.25124 -13.13412 -13.02663 -12.86047 -12.59057 -12.56791 -12.40237 -12.25921 -12.21153 -12.08958 -11.62831 -11.42991 -11.21404 -11.06474 -11.02774 -10.75501 -10.61335 -10.50075 -10.40946 -10.07465 -9.80674 -9.52916 -9.41309 -8.83549 -8.39581 -8.32738 -7.93697 -6.49196 -6.02496 -3.56452 1.07846 2.43656 2.48532 2.98602 3.02980 3.35620 3.48659 3.57893 4.26524 4.53498 4.63825 4.70245 4.82507 4.90921 4.96487 4.99183 5.07640 5.23574 5.25111 5.34769 5.47736 5.61289 5.64498 5.73116 5.73999 5.80140 5.92877 5.95294 5.99466 6.05193 6.09225 6.22068 6.25251 6.33996 6.41058 6.42400 6.53408 6.57694 6.64218 6.74963 6.83710 6.87465 7.03100 7.14561 7.26596 7.34978 7.39345 7.52523 7.58342 8.11343 8.51550 9.04542 9.69800 10.26563 11.11113 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.003401 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.901845 B = 8230.918123 C = 8472.150206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.366 6.366 3 C 0.538 3.462 4 O -0.502 6.502 5 C -0.059 4.059 6 N -0.513 5.513 7 H 0.423 0.577 8 C 0.092 3.908 9 C 0.110 3.890 10 N -0.530 5.530 11 C 0.050 3.950 12 C 0.168 3.832 13 H 0.072 0.928 14 C -0.155 4.155 15 N -0.595 5.595 16 C -0.275 4.275 17 H 0.069 0.931 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.867 3.133 21 H -0.281 1.281 22 H -0.304 1.304 23 H -0.259 1.259 24 C 0.172 3.828 25 H 0.028 0.972 26 C -0.145 4.145 27 C 0.046 3.954 28 C -0.208 4.208 29 C -0.054 4.054 30 C -0.093 4.093 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.036 0.964 41 H 0.263 0.737 42 H 0.068 0.932 43 H 0.033 0.967 44 H 0.068 0.932 45 H 0.035 0.965 46 H 0.070 0.930 47 H 0.146 0.854 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.149 -0.923 16.909 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.283 6.283 3 C 0.384 3.616 4 O -0.390 6.390 5 C -0.169 4.169 6 N -0.108 5.108 7 H 0.262 0.738 8 C -0.029 4.029 9 C -0.018 4.018 10 N -0.255 5.255 11 C -0.079 4.079 12 C 0.062 3.938 13 H 0.090 0.910 14 C -0.214 4.214 15 N -0.320 5.320 16 C -0.403 4.403 17 H 0.086 0.914 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.695 3.305 21 H -0.209 1.209 22 H -0.231 1.231 23 H -0.184 1.184 24 C 0.066 3.934 25 H 0.046 0.954 26 C -0.203 4.203 27 C -0.083 4.083 28 C -0.232 4.232 29 C -0.063 4.063 30 C -0.150 4.150 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.052 0.948 44 H 0.087 0.913 45 H 0.054 0.946 46 H 0.089 0.911 47 H 0.163 0.837 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.762 -1.069 16.560 21.559 hybrid contribution -0.636 -0.365 -0.270 0.781 sum -14.397 -1.435 16.290 21.788 Atomic orbital electron populations 1.23248 0.75767 1.03687 1.02674 1.86572 1.23865 1.32969 1.84927 1.19813 0.86997 0.81628 0.73113 1.90864 1.65445 1.35623 1.47118 1.18954 0.86167 0.88060 1.23767 1.41669 1.05117 1.08754 1.55227 0.73825 1.20367 0.85384 0.94073 1.03086 1.20783 0.91299 0.97243 0.92510 1.62118 1.29259 1.29613 1.04482 1.22629 0.87798 0.97774 0.99742 1.20738 0.97465 0.88386 0.87238 0.90979 1.22202 1.01116 0.97888 1.00206 1.44438 1.18369 1.33028 1.36116 1.18491 0.91524 1.45215 0.85098 0.91371 1.25831 0.96444 0.96110 0.96064 1.69900 1.40102 1.38814 1.04509 0.87282 0.84246 0.81632 0.77292 1.20873 1.23140 1.18369 1.20649 0.89275 0.92256 0.91233 0.95447 1.22059 1.00274 0.97080 1.00857 1.22774 1.00245 0.90790 0.94453 1.20625 0.96460 0.93234 1.12925 1.19933 0.92217 0.93838 1.00289 1.20388 1.01806 0.90546 1.02229 0.91832 0.91713 0.88077 0.90038 0.92240 0.91694 0.94758 0.92787 0.93213 0.94515 0.92707 0.91375 0.94825 0.91295 0.94627 0.91146 0.83663 0.91371 0.91378 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.38 16 2 O -0.37 -4.09 10.58 -41.03 -0.43 -4.52 16 3 C 0.54 7.05 7.93 34.05 0.27 7.32 16 4 O -0.50 -7.36 14.61 -19.36 -0.28 -7.64 16 5 C -0.06 -0.77 7.10 -82.00 -0.58 -1.35 16 6 N -0.51 -5.96 6.07 -5.82 -0.04 -5.99 16 7 H 0.42 4.16 8.96 -40.82 -0.37 3.79 16 8 C 0.09 1.11 5.04 -82.20 -0.41 0.70 16 9 C 0.11 1.29 5.80 -4.98 -0.03 1.26 16 10 N -0.53 -7.99 4.28 -235.76 -1.01 -9.00 16 11 C 0.05 0.77 4.97 -3.70 -0.02 0.76 16 12 C 0.17 3.24 3.31 -67.49 -0.22 3.01 16 13 H 0.07 1.42 7.96 -51.93 -0.41 1.00 16 14 C -0.15 -2.83 9.07 37.16 0.34 -2.49 16 15 N -0.60 -13.56 1.99 -157.01 -0.31 -13.87 16 16 C -0.27 -7.37 8.76 -15.06 -0.13 -7.50 16 17 H 0.07 2.01 8.06 -52.49 -0.42 1.59 16 18 C 0.06 1.61 3.93 -17.43 -0.07 1.54 16 19 N -0.89 -26.34 13.97 55.49 0.78 -25.57 16 20 Si 0.87 21.89 24.55 -169.99 -4.17 17.72 16 21 H -0.28 -7.00 6.37 56.52 0.36 -6.64 16 22 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 23 H -0.26 -6.44 5.75 56.52 0.33 -6.11 16 24 C 0.17 3.65 2.05 -67.49 -0.14 3.51 16 25 H 0.03 0.63 6.84 -51.93 -0.36 0.27 16 26 C -0.15 -3.23 7.79 37.16 0.29 -2.94 16 27 C 0.05 0.81 4.32 -3.70 -0.02 0.79 16 28 C -0.21 -2.59 9.39 -39.98 -0.38 -2.97 16 29 C -0.05 -0.70 6.22 -104.13 -0.65 -1.35 16 30 C -0.09 -1.06 9.83 36.01 0.35 -0.70 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 36 H 0.06 0.85 8.11 -51.93 -0.42 0.43 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 1.02 7.07 -51.93 -0.37 0.65 16 39 H 0.05 1.01 6.96 -51.93 -0.36 0.65 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.07 1.69 3.10 -51.93 -0.16 1.52 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 1.62 7.70 -51.93 -0.40 1.22 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 1.20 5.77 -51.93 -0.30 0.90 16 47 H 0.15 1.67 8.06 -52.48 -0.42 1.25 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.08 0.98 6.50 -51.93 -0.34 0.64 16 LS Contribution 384.22 15.07 5.79 5.79 Total: -1.00 -30.95 384.22 -8.23 -39.19 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -8.23 Total: 2.94 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -0.33 Total: 0.96 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.58 Total: -54.43 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.72 Total: -12.16 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.17 Total: 17.72 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.95 -8.23 -39.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331567484.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.300 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds