Wall clock time and date at job start Tue Mar 31 2020 20:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34895 * 117.00028 * 2 1 4 4 O 1.21627 * 119.99722 * 359.97438 * 3 2 1 5 5 C 1.46488 * 119.99988 * 179.97438 * 3 2 1 6 6 N 1.37693 * 126.26276 * 0.02562 * 5 3 2 7 7 H 0.96996 * 125.63763 * 359.97438 * 6 5 3 8 8 C 1.34962 * 108.72663 * 180.02562 * 6 5 3 9 9 C 1.50704 * 125.50743 * 179.97438 * 8 6 5 10 10 N 1.46898 * 109.47345 * 85.02288 * 9 8 6 11 11 C 1.46894 * 111.00306 * 170.00217 * 10 9 8 12 12 C 1.53239 * 109.36177 * 172.76141 * 11 10 9 13 13 H 1.09004 * 109.62595 * 173.72189 * 12 11 10 14 14 C 1.52999 * 109.62945 * 294.10108 * 12 11 10 15 15 N 1.47079 * 108.52087 * 53.81779 * 12 11 10 16 16 C 1.36937 * 120.87944 * 128.79393 * 15 12 11 17 17 H 1.07999 * 119.99885 * 308.22156 * 16 15 12 18 18 C 1.38809 * 120.00068 * 128.22058 * 16 15 12 19 19 N 1.31622 * 120.00017 * 157.93214 * 18 16 15 20 20 Si 1.86795 * 120.00032 * 337.93294 * 18 16 15 21 21 H 1.48506 * 109.47118 * 95.30697 * 20 18 16 22 22 H 1.48503 * 109.47494 * 215.30392 * 20 18 16 23 23 H 1.48500 * 109.47222 * 335.30565 * 20 18 16 24 24 C 1.47071 * 118.23642 * 308.81034 * 15 12 11 25 25 H 1.08998 * 109.63408 * 291.28290 * 24 15 12 26 26 C 1.52999 * 109.62776 * 170.89644 * 24 15 12 27 27 C 1.46898 * 111.01779 * 45.68230 * 10 9 8 28 28 C 1.35480 * 108.98785 * 0.24236 * 8 6 5 29 29 C 1.37998 * 126.25988 * 180.02562 * 5 3 2 30 30 C 1.50700 * 126.52047 * 359.97438 * 29 5 3 31 31 H 1.08995 * 109.47372 * 300.00517 * 1 2 3 32 32 H 1.09007 * 109.46894 * 60.00235 * 1 2 3 33 33 H 1.08997 * 109.46636 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46722 * 325.02650 * 9 8 6 35 35 H 1.09001 * 109.46979 * 205.02836 * 9 8 6 36 36 H 1.09004 * 109.49568 * 52.78442 * 11 10 9 37 37 H 1.09004 * 109.49097 * 292.73342 * 11 10 9 38 38 H 1.09005 * 109.46563 * 60.00707 * 14 12 11 39 39 H 1.09005 * 109.47020 * 179.97438 * 14 12 11 40 40 H 1.08996 * 109.47542 * 300.00634 * 14 12 11 41 41 H 0.97007 * 119.99777 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.47221 * 67.53544 * 26 24 15 43 43 H 1.08998 * 109.47280 * 187.53337 * 26 24 15 44 44 H 1.09005 * 109.47262 * 307.53912 * 26 24 15 45 45 H 1.08994 * 109.47345 * 67.27030 * 27 10 9 46 46 H 1.09005 * 109.51590 * 307.21173 * 27 10 9 47 47 H 1.08006 * 126.08096 * 179.75353 * 28 8 6 48 48 H 1.09007 * 109.47401 * 89.99383 * 30 29 5 49 49 H 1.08994 * 109.47445 * 209.99967 * 30 29 5 50 50 H 1.09006 * 109.46697 * 330.00013 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2219 -0.0005 5 6 3.5273 1.2786 0.0006 6 7 4.3987 0.2125 0.0006 7 1 4.1461 -0.7240 0.0007 8 6 5.6626 0.6859 0.0018 9 6 6.9126 -0.1559 0.0028 10 7 7.2529 -0.5289 -1.3767 11 6 8.5849 -1.1447 -1.4422 12 6 8.8276 -1.6812 -2.8570 13 1 9.8539 -2.0385 -2.9420 14 6 7.8582 -2.8294 -3.1446 15 7 8.5992 -0.5897 -3.8160 16 6 9.5338 -0.2848 -4.7694 17 1 10.5611 -0.1144 -4.4834 18 6 9.1606 -0.1948 -6.1033 19 7 9.8966 0.4967 -6.9474 20 14 7.6139 -1.0552 -6.7006 21 1 6.4798 -0.0965 -6.6929 22 1 7.8284 -1.5571 -8.0817 23 1 7.3037 -2.1961 -5.8020 24 6 7.3408 0.1658 -3.7237 25 1 6.5075 -0.4736 -4.0152 26 6 7.4028 1.3828 -4.6488 27 6 7.1566 0.6296 -2.2748 28 6 5.6260 2.0402 0.0079 29 6 4.2842 2.4325 0.0011 30 6 3.7633 3.8466 0.0007 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3632 -1.0277 0.0005 34 1 6.7430 -1.0573 0.5916 35 1 7.7337 0.4135 0.4384 36 1 8.6418 -1.9656 -0.7272 37 1 9.3426 -0.3991 -1.2010 38 1 6.8330 -2.4677 -3.0656 39 1 8.0327 -3.2087 -4.1515 40 1 8.0179 -3.6295 -2.4218 41 1 9.6355 0.5599 -7.8796 42 1 7.4165 1.0499 -5.6867 43 1 6.5289 2.0120 -4.4806 44 1 8.3075 1.9534 -4.4385 45 1 7.9338 1.3507 -2.0222 46 1 6.1776 1.0959 -2.1638 47 1 6.4814 2.6996 0.0140 48 1 3.6369 4.1876 1.0284 49 1 4.4732 4.4952 -0.5125 50 1 2.8030 3.8799 -0.5138 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331567484.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:23 Heat of formation + Delta-G solvation = -23.912926 kcal Electronic energy + Delta-G solvation = -30643.267830 eV Core-core repulsion = 26671.610248 eV Total energy + Delta-G solvation = -3971.657582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.66704 -41.02080 -40.09419 -37.55546 -36.64407 -34.44750 -33.72207 -33.50220 -31.63638 -30.08163 -28.95308 -28.41675 -27.66953 -27.05259 -25.77303 -23.97351 -22.71790 -22.57493 -21.34585 -20.37936 -20.15885 -19.44450 -18.55240 -17.90838 -17.53392 -17.29471 -16.65194 -16.45396 -16.05527 -15.75307 -15.51057 -15.23196 -15.05618 -14.75130 -14.55513 -14.36979 -14.08376 -14.05140 -13.93640 -13.79421 -13.66896 -13.51395 -13.27105 -13.07571 -13.01312 -12.93779 -12.64778 -12.37943 -12.31305 -12.25131 -12.14643 -11.86529 -11.74679 -11.66608 -11.56884 -11.29369 -11.17193 -10.48200 -9.75734 -9.38236 -9.07901 -8.37431 -8.17557 -5.68972 0.12223 1.31916 1.40834 1.52376 1.53521 1.61448 2.03130 2.15951 2.43823 3.04048 3.08783 3.41471 3.68262 3.85742 4.10823 4.16686 4.18482 4.24843 4.27022 4.30741 4.41860 4.46602 4.51663 4.59560 4.64687 4.67095 4.71528 4.73746 4.82100 4.85831 4.88378 4.89870 4.90484 4.93131 5.07868 5.12584 5.18061 5.19946 5.33476 5.38285 5.42850 5.53760 5.64063 5.71145 5.90214 5.99356 6.15118 6.20113 6.33746 6.44899 6.65637 7.13578 7.66239 8.25141 8.99034 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.003401 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.901845 B = 8230.918123 C = 8472.150206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.537 3.463 4 O -0.525 6.525 5 C -0.073 4.073 6 N -0.504 5.504 7 H 0.432 0.568 8 C 0.092 3.908 9 C 0.115 3.885 10 N -0.531 5.531 11 C 0.060 3.940 12 C 0.157 3.843 13 H 0.061 0.939 14 C -0.143 4.143 15 N -0.607 5.607 16 C -0.259 4.259 17 H 0.031 0.969 18 C 0.018 3.982 19 N -0.939 5.939 20 Si 0.918 3.082 21 H -0.276 1.276 22 H -0.313 1.313 23 H -0.251 1.251 24 C 0.169 3.831 25 H 0.019 0.981 26 C -0.140 4.140 27 C 0.064 3.936 28 C -0.216 4.216 29 C -0.069 4.069 30 C -0.090 4.090 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.132 0.868 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.026 0.974 38 H 0.049 0.951 39 H 0.021 0.979 40 H 0.073 0.927 41 H 0.262 0.738 42 H 0.041 0.959 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.026 0.974 46 H 0.079 0.921 47 H 0.153 0.847 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.728 -2.405 19.488 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.285 6.285 3 C 0.384 3.616 4 O -0.416 6.416 5 C -0.184 4.184 6 N -0.099 5.099 7 H 0.272 0.728 8 C -0.030 4.030 9 C -0.013 4.013 10 N -0.256 5.256 11 C -0.069 4.069 12 C 0.052 3.948 13 H 0.079 0.921 14 C -0.202 4.202 15 N -0.332 5.332 16 C -0.389 4.389 17 H 0.048 0.952 18 C -0.180 4.180 19 N -0.581 5.581 20 Si 0.746 3.254 21 H -0.203 1.203 22 H -0.241 1.241 23 H -0.175 1.175 24 C 0.064 3.936 25 H 0.037 0.963 26 C -0.198 4.198 27 C -0.065 4.065 28 C -0.240 4.240 29 C -0.077 4.077 30 C -0.147 4.147 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.150 0.850 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.040 0.960 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.045 0.955 46 H 0.097 0.903 47 H 0.170 0.830 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.370 -2.594 19.186 24.720 hybrid contribution -0.141 0.095 -0.984 0.999 sum -15.511 -2.500 18.202 24.045 Atomic orbital electron populations 1.23560 0.73999 1.05795 1.02721 1.86560 1.25610 1.31857 1.84436 1.19907 0.87169 0.81851 0.72644 1.90849 1.65965 1.36438 1.48340 1.19063 0.86420 0.88597 1.24274 1.41645 1.04754 1.08996 1.54540 0.72786 1.20444 0.85642 0.94011 1.02873 1.20867 0.91209 0.98793 0.90408 1.62055 1.28797 1.28519 1.06258 1.22471 0.87864 0.98758 0.97759 1.20939 0.97425 0.87932 0.88523 0.92060 1.22056 1.00242 0.98277 0.99641 1.44552 1.17988 1.34708 1.35950 1.18297 0.90902 1.43704 0.86001 0.95165 1.26245 0.98778 0.96797 0.96204 1.70001 1.42297 1.41029 1.04767 0.86458 0.81774 0.80881 0.76308 1.20260 1.24143 1.17485 1.20670 0.88017 0.91325 0.93626 0.96291 1.21976 1.00414 0.97853 0.99579 1.22432 1.00301 0.91346 0.92451 1.20798 0.96482 0.93766 1.12984 1.20206 0.92684 0.94437 1.00393 1.20374 1.01235 0.90339 1.02747 0.91483 0.92051 0.84955 0.87055 0.91032 0.87813 0.95536 0.93190 0.95991 0.90819 0.92916 0.94031 0.92121 0.93504 0.95547 0.90299 0.82959 0.90473 0.90410 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.57 113.37 1.20 1.64 16 2 O -0.37 -7.51 10.58 -58.10 -0.61 -8.13 16 3 C 0.54 13.39 7.93 69.97 0.55 13.95 16 4 O -0.53 -15.09 14.61 19.42 0.28 -14.81 16 5 C -0.07 -1.77 7.10 40.32 0.29 -1.48 16 6 N -0.50 -10.21 6.07 -172.33 -1.05 -11.26 16 7 H 0.43 7.02 8.96 -92.71 -0.83 6.19 16 8 C 0.09 1.91 5.04 41.44 0.21 2.12 16 9 C 0.11 2.16 5.80 85.56 0.50 2.66 16 10 N -0.53 -14.02 4.28 -899.81 -3.85 -17.87 16 11 C 0.06 1.66 4.97 86.38 0.43 2.09 16 12 C 0.16 5.75 3.31 44.96 0.15 5.90 16 13 H 0.06 2.35 7.96 -2.38 -0.02 2.33 16 14 C -0.14 -4.82 9.07 71.98 0.65 -4.17 16 15 N -0.61 -27.38 1.99 -650.66 -1.29 -28.67 16 16 C -0.26 -14.25 8.76 84.03 0.74 -13.51 16 17 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 18 C 0.02 1.04 3.93 84.86 0.33 1.38 16 19 N -0.94 -57.31 13.97 21.65 0.30 -57.00 16 20 Si 0.92 45.94 24.55 68.60 1.68 47.62 16 21 H -0.28 -13.43 6.37 99.48 0.63 -12.80 16 22 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 23 H -0.25 -12.09 5.75 99.48 0.57 -11.51 16 24 C 0.17 6.98 2.05 44.96 0.09 7.07 16 25 H 0.02 0.84 6.84 -2.39 -0.02 0.82 16 26 C -0.14 -6.23 7.79 71.98 0.56 -5.67 16 27 C 0.06 2.09 4.32 86.39 0.37 2.46 16 28 C -0.22 -4.85 9.39 22.01 0.21 -4.64 16 29 C -0.07 -1.66 6.22 -19.54 -0.12 -1.78 16 30 C -0.09 -1.96 9.83 71.24 0.70 -1.26 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 36 H 0.10 2.14 8.11 -2.39 -0.02 2.12 16 37 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.05 1.72 7.07 -2.38 -0.02 1.70 16 39 H 0.02 0.83 6.96 -2.38 -0.02 0.82 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 42 H 0.04 2.06 3.10 -2.39 -0.01 2.05 16 43 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.05 2.24 7.70 -2.38 -0.02 2.22 16 45 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.08 2.47 5.77 -2.38 -0.01 2.46 16 47 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 48 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 49 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.06 1.58 6.50 -2.38 -0.02 1.56 16 Total: -1.00 -69.22 384.22 2.23 -66.99 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -0.09 Total: 16.38 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 6.86 Total: 6.74 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -5.88 Total: -114.80 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.33 Total: -22.93 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.68 Total: 47.62 kcal Total: -69.22 2.23 -66.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331567484.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.074 kcal (2) G-P(sol) polarization free energy of solvation -69.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds