Wall clock time and date at job start Tue Mar 31 2020 20:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34897 * 116.99683 * 2 1 4 4 O 1.21617 * 120.00046 * 359.97438 * 3 2 1 5 5 C 1.46497 * 119.99747 * 180.02562 * 3 2 1 6 6 N 1.37696 * 126.26049 * 359.97283 * 5 3 2 7 7 H 0.96998 * 125.64557 * 0.02562 * 6 5 3 8 8 C 1.34963 * 108.72449 * 180.02562 * 6 5 3 9 9 C 1.50705 * 125.50702 * 179.97438 * 8 6 5 10 10 N 1.46898 * 109.46997 * 85.02585 * 9 8 6 11 11 C 1.46896 * 111.00139 * 170.00340 * 10 9 8 12 12 C 1.53237 * 109.36443 * 172.76076 * 11 10 9 13 13 H 1.09001 * 109.62767 * 294.10297 * 12 11 10 14 14 C 1.53001 * 109.62784 * 173.52416 * 12 11 10 15 15 N 1.47080 * 108.52065 * 53.81339 * 12 11 10 16 16 C 1.36942 * 120.87877 * 128.79541 * 15 12 11 17 17 H 1.07994 * 120.00117 * 333.43482 * 16 15 12 18 18 C 1.38817 * 119.99756 * 153.43542 * 16 15 12 19 19 N 1.31617 * 119.99771 * 342.97318 * 18 16 15 20 20 Si 1.86798 * 119.99957 * 162.98090 * 18 16 15 21 21 H 1.48497 * 109.46918 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47181 * 119.99579 * 20 18 16 23 23 H 1.48503 * 109.47134 * 239.99853 * 20 18 16 24 24 C 1.47074 * 118.23796 * 308.81494 * 15 12 11 25 25 H 1.09001 * 109.62875 * 170.89661 * 24 15 12 26 26 C 1.52995 * 109.63047 * 291.27975 * 24 15 12 27 27 C 1.46896 * 111.02417 * 45.67989 * 10 9 8 28 28 C 1.35481 * 108.98634 * 0.23011 * 8 6 5 29 29 C 1.37989 * 126.26318 * 180.02562 * 5 3 2 30 30 C 1.50707 * 126.51505 * 359.97438 * 29 5 3 31 31 H 1.09001 * 109.47176 * 60.00458 * 1 2 3 32 32 H 1.09007 * 109.46987 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47266 * 299.99631 * 1 2 3 34 34 H 1.09002 * 109.47213 * 325.02551 * 9 8 6 35 35 H 1.08997 * 109.47318 * 205.02655 * 9 8 6 36 36 H 1.08995 * 109.49455 * 52.78054 * 11 10 9 37 37 H 1.09006 * 109.49157 * 292.73120 * 11 10 9 38 38 H 1.08998 * 109.47214 * 60.00228 * 14 12 11 39 39 H 1.09002 * 109.46680 * 179.97438 * 14 12 11 40 40 H 1.09002 * 109.47379 * 299.99531 * 14 12 11 41 41 H 0.97008 * 120.00248 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.47124 * 60.00287 * 26 24 15 43 43 H 1.08997 * 109.47563 * 179.97438 * 26 24 15 44 44 H 1.08996 * 109.47693 * 300.00431 * 26 24 15 45 45 H 1.09007 * 109.46854 * 67.26399 * 27 10 9 46 46 H 1.09001 * 109.51466 * 307.22132 * 27 10 9 47 47 H 1.08003 * 126.07976 * 179.74973 * 28 8 6 48 48 H 1.09000 * 109.47114 * 89.99641 * 30 29 5 49 49 H 1.08999 * 109.46988 * 210.00182 * 30 29 5 50 50 H 1.08999 * 109.46943 * 329.99897 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2020 0.0000 4 8 1.4019 2.2219 -0.0005 5 6 3.5273 1.2787 -0.0006 6 7 4.3987 0.2125 -0.0006 7 1 4.1462 -0.7240 -0.0006 8 6 5.6626 0.6860 -0.0006 9 6 6.9126 -0.1558 -0.0001 10 7 7.2519 -0.5295 -1.3797 11 6 8.5838 -1.1453 -1.4459 12 6 8.8255 -1.6824 -2.8606 13 1 8.1347 -2.5005 -3.0646 14 6 10.2674 -2.1795 -2.9823 15 7 8.5964 -0.5914 -3.8200 16 6 9.5302 -0.2869 -4.7743 17 1 10.5726 -0.5090 -4.5999 18 6 9.1369 0.3071 -5.9656 19 7 7.8726 0.2765 -6.3302 20 14 10.4020 1.1497 -7.0514 21 1 11.7426 1.0462 -6.4212 22 1 10.4283 0.4921 -8.3827 23 1 10.0407 2.5810 -7.2133 24 6 7.3379 0.1641 -3.7271 25 1 7.3816 1.0308 -4.3867 26 6 6.1681 -0.7336 -4.1350 27 6 7.1549 0.6285 -2.2783 28 6 5.6259 2.0403 0.0045 29 6 4.2841 2.4325 -0.0001 30 6 3.7632 3.8467 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 6.7436 -1.0570 0.5893 35 1 7.7341 0.4138 0.4345 36 1 8.6412 -1.9657 -0.7306 37 1 9.3417 -0.3996 -1.2056 38 1 10.4394 -2.9761 -2.2585 39 1 10.4363 -2.5613 -3.9892 40 1 10.9536 -1.3557 -2.7859 41 1 7.5976 0.6919 -7.1626 42 1 6.1226 -1.5958 -3.4697 43 1 5.2370 -0.1714 -4.0648 44 1 6.3113 -1.0735 -5.1607 45 1 7.9323 1.3499 -2.0266 46 1 6.1761 1.0950 -2.1668 47 1 6.4813 2.6997 0.0096 48 1 3.6376 4.1871 1.0283 49 1 4.4727 4.4954 -0.5132 50 1 2.8025 3.8801 -0.5133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331567489.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:28 Heat of formation + Delta-G solvation = -7.952149 kcal Electronic energy + Delta-G solvation = -30494.434368 eV Core-core repulsion = 26523.468897 eV Total energy + Delta-G solvation = -3970.965471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.63282 -39.99402 -38.41885 -36.54617 -34.93689 -32.66787 -32.56282 -31.43640 -30.34114 -28.25202 -27.86515 -27.14381 -26.01748 -25.89577 -24.05995 -22.55568 -21.66840 -20.84617 -20.15570 -19.31827 -18.51102 -18.40492 -16.92519 -16.54950 -16.28347 -15.61692 -15.39864 -14.79816 -14.37552 -14.25706 -14.14400 -13.86950 -13.69475 -13.29111 -13.12997 -13.07171 -13.01309 -12.87564 -12.57971 -12.39177 -12.29332 -11.97590 -11.81528 -11.54805 -11.50694 -11.19119 -10.98552 -10.92880 -10.87810 -10.60670 -10.54183 -10.48179 -10.43512 -9.99726 -9.89777 -9.44128 -9.19612 -8.73045 -8.44745 -8.19960 -7.77445 -6.60094 -5.72734 -3.13896 1.17568 2.52283 2.58905 3.07984 3.13483 3.38944 3.47543 3.48479 4.41533 4.52829 4.76318 4.79238 4.89695 4.98106 5.08293 5.16958 5.31316 5.32301 5.39533 5.47077 5.58190 5.70516 5.79885 5.80781 5.87000 5.90967 6.07272 6.09466 6.12745 6.14606 6.26623 6.30926 6.38041 6.43439 6.44865 6.66665 6.74001 6.86162 6.93607 6.96520 7.03882 7.12840 7.25561 7.37248 7.49765 7.53250 7.67125 7.76756 7.86950 7.99088 8.49409 9.27969 9.90522 10.48190 11.34561 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014638 B = 0.003178 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.309808 B = 8808.544722 C = 9290.593272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.366 6.366 3 C 0.539 3.461 4 O -0.503 6.503 5 C -0.060 4.060 6 N -0.512 5.512 7 H 0.423 0.577 8 C 0.096 3.904 9 C 0.108 3.892 10 N -0.527 5.527 11 C 0.049 3.951 12 C 0.172 3.828 13 H 0.032 0.968 14 C -0.137 4.137 15 N -0.585 5.585 16 C -0.248 4.248 17 H 0.071 0.929 18 C 0.002 3.998 19 N -0.897 5.897 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.290 1.290 24 C 0.199 3.801 25 H 0.094 0.906 26 C -0.132 4.132 27 C 0.039 3.961 28 C -0.209 4.209 29 C -0.055 4.055 30 C -0.092 4.092 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.031 0.969 38 H 0.038 0.962 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.251 0.749 42 H 0.030 0.970 43 H 0.018 0.982 44 H 0.072 0.928 45 H 0.024 0.976 46 H 0.069 0.931 47 H 0.144 0.856 48 H 0.067 0.933 49 H 0.067 0.933 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.621 -0.813 15.547 17.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.283 6.283 3 C 0.385 3.615 4 O -0.392 6.392 5 C -0.170 4.170 6 N -0.107 5.107 7 H 0.262 0.738 8 C -0.025 4.025 9 C -0.020 4.020 10 N -0.252 5.252 11 C -0.080 4.080 12 C 0.065 3.935 13 H 0.050 0.950 14 C -0.195 4.195 15 N -0.308 5.308 16 C -0.378 4.378 17 H 0.088 0.912 18 C -0.197 4.197 19 N -0.542 5.542 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.217 1.217 24 C 0.092 3.908 25 H 0.112 0.888 26 C -0.191 4.191 27 C -0.089 4.089 28 C -0.234 4.234 29 C -0.063 4.063 30 C -0.149 4.149 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.037 0.963 44 H 0.091 0.909 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.162 0.838 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.347 -0.965 15.227 17.893 hybrid contribution 0.807 0.590 -0.396 1.075 sum -8.539 -0.376 14.831 17.118 Atomic orbital electron populations 1.23241 0.75843 1.03655 1.02632 1.86575 1.23806 1.32978 1.84931 1.19810 0.87000 0.81601 0.73058 1.90855 1.65462 1.35636 1.47221 1.18934 0.86144 0.88058 1.23828 1.41656 1.05108 1.08734 1.55156 0.73839 1.20350 0.85383 0.94034 1.02782 1.20795 0.91240 0.97049 0.92917 1.62160 1.28888 1.30009 1.04100 1.22697 0.87911 0.97578 0.99854 1.20435 0.94379 0.90920 0.87736 0.95021 1.21800 0.96932 0.99516 1.01293 1.44311 1.18485 1.33613 1.34441 1.19226 0.88709 1.35823 0.94022 0.91166 1.24992 0.95995 1.02298 0.96375 1.70024 1.14755 1.46649 1.22794 0.86309 0.81101 0.79409 0.80454 1.20477 1.21923 1.21734 1.20392 0.85179 0.95604 0.89644 0.88797 1.21929 0.96198 0.98800 1.02218 1.22962 0.99609 0.90419 0.95959 1.20597 0.96408 0.93256 1.13110 1.19910 0.92219 0.93806 1.00372 1.20381 1.01806 0.90603 1.02125 0.91715 0.88102 0.91890 0.90272 0.92540 0.92158 0.95100 0.94277 0.91844 0.92897 0.93884 0.95086 0.96328 0.90902 0.95730 0.91284 0.83792 0.91457 0.91440 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.57 101.05 1.07 1.41 16 2 O -0.37 -4.35 10.58 -41.03 -0.43 -4.79 16 3 C 0.54 7.49 7.93 34.06 0.27 7.76 16 4 O -0.50 -7.74 14.61 -19.35 -0.28 -8.02 16 5 C -0.06 -0.83 7.10 -82.00 -0.58 -1.41 16 6 N -0.51 -6.48 6.07 -5.82 -0.04 -6.51 16 7 H 0.42 4.60 8.96 -40.82 -0.37 4.24 16 8 C 0.10 1.26 5.04 -82.20 -0.41 0.85 16 9 C 0.11 1.39 5.80 -4.97 -0.03 1.37 16 10 N -0.53 -8.64 4.28 -235.77 -1.01 -9.65 16 11 C 0.05 0.82 4.87 -3.70 -0.02 0.80 16 12 C 0.17 3.45 3.26 -67.49 -0.22 3.23 16 13 H 0.03 0.69 7.63 -51.93 -0.40 0.29 16 14 C -0.14 -2.48 7.93 37.16 0.29 -2.18 16 15 N -0.59 -13.94 2.73 -157.01 -0.43 -14.36 16 16 C -0.25 -6.49 8.73 -15.06 -0.13 -6.62 16 17 H 0.07 1.80 6.16 -52.49 -0.32 1.48 16 18 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16 19 N -0.90 -25.08 9.76 55.49 0.54 -24.54 16 20 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.20 4.59 2.34 -67.50 -0.16 4.43 16 25 H 0.09 2.51 6.12 -51.93 -0.32 2.19 16 26 C -0.13 -3.02 8.97 37.15 0.33 -2.69 16 27 C 0.04 0.75 4.42 -3.71 -0.02 0.73 16 28 C -0.21 -2.83 9.39 -39.98 -0.38 -3.21 16 29 C -0.05 -0.76 6.22 -104.13 -0.65 -1.41 16 30 C -0.09 -1.13 9.83 36.01 0.35 -0.77 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 36 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 1.24 7.58 -51.93 -0.39 0.84 16 40 H 0.05 0.97 7.54 -51.93 -0.39 0.58 16 41 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.03 0.67 7.10 -51.93 -0.37 0.30 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 1.89 6.88 -51.93 -0.36 1.53 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.07 1.31 5.77 -51.93 -0.30 1.01 16 47 H 0.14 1.80 8.06 -52.48 -0.42 1.38 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.08 1.04 6.50 -51.93 -0.34 0.70 16 LS Contribution 390.49 15.07 5.88 5.88 Total: -1.00 -29.95 390.49 -9.33 -39.28 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -8.18 Total: 4.12 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -0.36 Total: 2.25 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.93 Total: -55.07 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.72 Total: -12.81 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.95 -9.33 -39.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331567489.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.326 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds