Wall clock time and date at job start Tue Mar 31 2020 20:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34897 * 116.99683 * 2 1 4 4 O 1.21617 * 120.00046 * 359.97438 * 3 2 1 5 5 C 1.46497 * 119.99747 * 180.02562 * 3 2 1 6 6 N 1.37696 * 126.26049 * 359.97283 * 5 3 2 7 7 H 0.96998 * 125.64557 * 0.02562 * 6 5 3 8 8 C 1.34963 * 108.72449 * 180.02562 * 6 5 3 9 9 C 1.50705 * 125.50702 * 179.97438 * 8 6 5 10 10 N 1.46898 * 109.46997 * 85.02585 * 9 8 6 11 11 C 1.46896 * 111.00139 * 170.00340 * 10 9 8 12 12 C 1.53237 * 109.36443 * 172.76076 * 11 10 9 13 13 H 1.09001 * 109.62767 * 294.10297 * 12 11 10 14 14 C 1.53001 * 109.62784 * 173.52416 * 12 11 10 15 15 N 1.47080 * 108.52065 * 53.81339 * 12 11 10 16 16 C 1.36942 * 120.87877 * 128.79541 * 15 12 11 17 17 H 1.07994 * 120.00117 * 333.43482 * 16 15 12 18 18 C 1.38817 * 119.99756 * 153.43542 * 16 15 12 19 19 N 1.31617 * 119.99771 * 342.97318 * 18 16 15 20 20 Si 1.86798 * 119.99957 * 162.98090 * 18 16 15 21 21 H 1.48497 * 109.46918 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47181 * 119.99579 * 20 18 16 23 23 H 1.48503 * 109.47134 * 239.99853 * 20 18 16 24 24 C 1.47074 * 118.23796 * 308.81494 * 15 12 11 25 25 H 1.09001 * 109.62875 * 170.89661 * 24 15 12 26 26 C 1.52995 * 109.63047 * 291.27975 * 24 15 12 27 27 C 1.46896 * 111.02417 * 45.67989 * 10 9 8 28 28 C 1.35481 * 108.98634 * 0.23011 * 8 6 5 29 29 C 1.37989 * 126.26318 * 180.02562 * 5 3 2 30 30 C 1.50707 * 126.51505 * 359.97438 * 29 5 3 31 31 H 1.09001 * 109.47176 * 60.00458 * 1 2 3 32 32 H 1.09007 * 109.46987 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47266 * 299.99631 * 1 2 3 34 34 H 1.09002 * 109.47213 * 325.02551 * 9 8 6 35 35 H 1.08997 * 109.47318 * 205.02655 * 9 8 6 36 36 H 1.08995 * 109.49455 * 52.78054 * 11 10 9 37 37 H 1.09006 * 109.49157 * 292.73120 * 11 10 9 38 38 H 1.08998 * 109.47214 * 60.00228 * 14 12 11 39 39 H 1.09002 * 109.46680 * 179.97438 * 14 12 11 40 40 H 1.09002 * 109.47379 * 299.99531 * 14 12 11 41 41 H 0.97008 * 120.00248 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.47124 * 60.00287 * 26 24 15 43 43 H 1.08997 * 109.47563 * 179.97438 * 26 24 15 44 44 H 1.08996 * 109.47693 * 300.00431 * 26 24 15 45 45 H 1.09007 * 109.46854 * 67.26399 * 27 10 9 46 46 H 1.09001 * 109.51466 * 307.22132 * 27 10 9 47 47 H 1.08003 * 126.07976 * 179.74973 * 28 8 6 48 48 H 1.09000 * 109.47114 * 89.99641 * 30 29 5 49 49 H 1.08999 * 109.46988 * 210.00182 * 30 29 5 50 50 H 1.08999 * 109.46943 * 329.99897 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2020 0.0000 4 8 1.4019 2.2219 -0.0005 5 6 3.5273 1.2787 -0.0006 6 7 4.3987 0.2125 -0.0006 7 1 4.1462 -0.7240 -0.0006 8 6 5.6626 0.6860 -0.0006 9 6 6.9126 -0.1558 -0.0001 10 7 7.2519 -0.5295 -1.3797 11 6 8.5838 -1.1453 -1.4459 12 6 8.8255 -1.6824 -2.8606 13 1 8.1347 -2.5005 -3.0646 14 6 10.2674 -2.1795 -2.9823 15 7 8.5964 -0.5914 -3.8200 16 6 9.5302 -0.2869 -4.7743 17 1 10.5726 -0.5090 -4.5999 18 6 9.1369 0.3071 -5.9656 19 7 7.8726 0.2765 -6.3302 20 14 10.4020 1.1497 -7.0514 21 1 11.7426 1.0462 -6.4212 22 1 10.4283 0.4921 -8.3827 23 1 10.0407 2.5810 -7.2133 24 6 7.3379 0.1641 -3.7271 25 1 7.3816 1.0308 -4.3867 26 6 6.1681 -0.7336 -4.1350 27 6 7.1549 0.6285 -2.2783 28 6 5.6259 2.0403 0.0045 29 6 4.2841 2.4325 -0.0001 30 6 3.7632 3.8467 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 6.7436 -1.0570 0.5893 35 1 7.7341 0.4138 0.4345 36 1 8.6412 -1.9657 -0.7306 37 1 9.3417 -0.3996 -1.2056 38 1 10.4394 -2.9761 -2.2585 39 1 10.4363 -2.5613 -3.9892 40 1 10.9536 -1.3557 -2.7859 41 1 7.5976 0.6919 -7.1626 42 1 6.1226 -1.5958 -3.4697 43 1 5.2370 -0.1714 -4.0648 44 1 6.3113 -1.0735 -5.1607 45 1 7.9323 1.3499 -2.0266 46 1 6.1761 1.0950 -2.1668 47 1 6.4813 2.6997 0.0096 48 1 3.6376 4.1871 1.0283 49 1 4.4727 4.4954 -0.5132 50 1 2.8025 3.8801 -0.5133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331567489.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:27 Heat of formation + Delta-G solvation = -25.764024 kcal Electronic energy + Delta-G solvation = -30495.206749 eV Core-core repulsion = 26523.468897 eV Total energy + Delta-G solvation = -3971.737851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.65354 -41.00496 -39.92574 -37.54526 -36.46981 -34.26687 -33.68538 -33.16171 -31.55710 -29.70632 -28.93718 -28.33085 -27.47273 -27.06700 -25.82970 -23.91179 -22.94303 -22.26116 -21.26679 -20.48903 -20.11550 -19.42198 -17.99928 -17.89802 -17.50830 -17.19413 -16.58246 -16.31149 -15.70078 -15.61227 -15.50449 -15.39220 -14.83718 -14.80175 -14.47991 -14.18693 -14.06735 -13.97448 -13.69915 -13.57315 -13.42108 -13.27378 -13.05691 -13.00356 -12.86602 -12.76141 -12.73387 -12.47272 -12.21371 -12.18439 -12.12146 -11.85634 -11.82243 -11.60455 -11.56731 -11.20923 -10.96696 -10.43221 -9.74825 -9.33763 -9.04411 -8.50578 -7.74775 -5.16677 0.13255 1.47022 1.50655 1.53337 1.58566 1.62583 2.04012 2.17186 2.56829 3.14985 3.40017 3.65914 3.71499 3.86589 4.11249 4.18144 4.27570 4.29329 4.31728 4.39251 4.46234 4.53309 4.66157 4.67714 4.68501 4.73295 4.74059 4.85480 4.85703 4.90485 4.92264 4.94285 5.02257 5.11025 5.12511 5.18285 5.26818 5.34316 5.42946 5.48696 5.59672 5.71420 5.73924 5.79240 5.91153 6.01625 6.22279 6.28587 6.45667 6.51852 6.66382 7.28270 8.00317 8.52310 9.30096 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014638 B = 0.003178 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.309808 B = 8808.544722 C = 9290.593272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.538 3.462 4 O -0.525 6.525 5 C -0.074 4.074 6 N -0.504 5.504 7 H 0.431 0.569 8 C 0.094 3.906 9 C 0.113 3.887 10 N -0.532 5.532 11 C 0.058 3.942 12 C 0.163 3.837 13 H 0.018 0.982 14 C -0.129 4.129 15 N -0.601 5.601 16 C -0.246 4.246 17 H 0.074 0.926 18 C -0.051 4.051 19 N -0.924 5.924 20 Si 0.953 3.047 21 H -0.269 1.269 22 H -0.298 1.298 23 H -0.297 1.297 24 C 0.196 3.804 25 H 0.051 0.949 26 C -0.112 4.112 27 C 0.061 3.939 28 C -0.218 4.218 29 C -0.069 4.069 30 C -0.089 4.089 31 H 0.060 0.940 32 H 0.133 0.867 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.028 0.972 38 H 0.077 0.923 39 H 0.039 0.961 40 H 0.047 0.953 41 H 0.242 0.758 42 H 0.039 0.961 43 H 0.023 0.977 44 H 0.035 0.965 45 H 0.016 0.984 46 H 0.070 0.930 47 H 0.152 0.848 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.039 -1.859 18.016 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.285 6.285 3 C 0.385 3.615 4 O -0.416 6.416 5 C -0.184 4.184 6 N -0.099 5.099 7 H 0.271 0.729 8 C -0.028 4.028 9 C -0.014 4.014 10 N -0.256 5.256 11 C -0.071 4.071 12 C 0.057 3.943 13 H 0.035 0.965 14 C -0.187 4.187 15 N -0.324 5.324 16 C -0.377 4.377 17 H 0.091 0.909 18 C -0.247 4.247 19 N -0.571 5.571 20 Si 0.783 3.217 21 H -0.193 1.193 22 H -0.226 1.226 23 H -0.224 1.224 24 C 0.089 3.911 25 H 0.069 0.931 26 C -0.172 4.172 27 C -0.068 4.068 28 C -0.242 4.242 29 C -0.078 4.078 30 C -0.146 4.146 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.047 0.953 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.042 0.958 44 H 0.054 0.946 45 H 0.034 0.966 46 H 0.089 0.911 47 H 0.169 0.831 48 H 0.097 0.903 49 H 0.095 0.905 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.757 -2.050 17.734 19.884 hybrid contribution 0.569 0.836 -1.114 1.505 sum -8.187 -1.214 16.620 18.567 Atomic orbital electron populations 1.23566 0.73971 1.05821 1.02730 1.86562 1.25653 1.31832 1.84429 1.19881 0.87117 0.81864 0.72623 1.90839 1.65942 1.36416 1.48386 1.19074 0.86487 0.88569 1.24290 1.41639 1.04783 1.08976 1.54531 0.72867 1.20446 0.85675 0.94027 1.02654 1.20880 0.91215 0.98627 0.90714 1.62064 1.28894 1.28758 1.05933 1.22556 0.87844 0.98597 0.98056 1.20680 0.95249 0.89560 0.88798 0.96456 1.21709 0.95452 1.00402 1.01117 1.44549 1.18180 1.35013 1.34708 1.19512 0.89437 1.34530 0.94184 0.90886 1.25626 0.97399 1.03747 0.97885 1.70191 1.16196 1.47872 1.22843 0.85417 0.79764 0.77844 0.78679 1.19303 1.22607 1.22436 1.20247 0.85147 0.94084 0.91581 0.93053 1.21687 0.96492 0.99008 0.99968 1.22518 0.99294 0.91010 0.93979 1.20781 0.96501 0.93778 1.13158 1.20208 0.92654 0.94502 1.00430 1.20371 1.01198 0.90260 1.02785 0.92092 0.84922 0.91395 0.87272 0.91122 0.88365 0.95343 0.90378 0.94168 0.93355 0.94817 0.94184 0.95842 0.94611 0.96610 0.91143 0.83052 0.90310 0.90511 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.57 113.37 1.20 1.69 16 2 O -0.37 -8.29 10.58 -58.12 -0.61 -8.91 16 3 C 0.54 14.61 7.93 69.97 0.55 15.17 16 4 O -0.53 -16.11 14.61 19.45 0.28 -15.83 16 5 C -0.07 -1.98 7.10 40.32 0.29 -1.69 16 6 N -0.50 -11.71 6.07 -172.32 -1.05 -12.76 16 7 H 0.43 8.33 8.96 -92.71 -0.83 7.50 16 8 C 0.09 2.23 5.04 41.44 0.21 2.44 16 9 C 0.11 2.47 5.80 85.56 0.50 2.96 16 10 N -0.53 -15.88 4.28 -899.84 -3.85 -19.73 16 11 C 0.06 1.75 4.87 86.38 0.42 2.17 16 12 C 0.16 6.24 3.26 44.96 0.15 6.38 16 13 H 0.02 0.73 7.63 -2.39 -0.02 0.71 16 14 C -0.13 -4.37 7.93 71.98 0.57 -3.80 16 15 N -0.60 -28.60 2.73 -650.67 -1.78 -30.37 16 16 C -0.25 -12.97 8.73 84.03 0.73 -12.24 16 17 H 0.07 3.74 6.16 -2.91 -0.02 3.72 16 18 C -0.05 -2.82 4.93 84.86 0.42 -2.40 16 19 N -0.92 -53.62 9.76 21.65 0.21 -53.41 16 20 Si 0.95 44.88 29.59 68.60 2.03 46.91 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 22 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 24 C 0.20 9.17 2.34 44.96 0.11 9.27 16 25 H 0.05 2.84 6.12 -2.39 -0.01 2.83 16 26 C -0.11 -5.20 8.97 71.98 0.65 -4.56 16 27 C 0.06 2.27 4.42 86.38 0.38 2.65 16 28 C -0.22 -5.52 9.39 22.01 0.21 -5.31 16 29 C -0.07 -1.86 6.22 -19.54 -0.12 -1.98 16 30 C -0.09 -2.13 9.83 71.24 0.70 -1.43 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 36 H 0.10 2.26 8.11 -2.39 -0.02 2.24 16 37 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.04 1.52 7.58 -2.39 -0.02 1.50 16 40 H 0.05 1.67 7.54 -2.39 -0.02 1.65 16 41 H 0.24 13.90 8.31 -92.70 -0.77 13.13 16 42 H 0.04 1.73 7.10 -2.38 -0.02 1.71 16 43 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.03 1.90 6.88 -2.39 -0.02 1.88 16 45 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 46 H 0.07 2.59 5.77 -2.39 -0.01 2.58 16 47 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 48 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.06 1.71 6.50 -2.39 -0.02 1.69 16 Total: -1.00 -66.72 390.49 2.30 -64.42 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.11 Total: 20.35 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 6.95 Total: 9.34 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -6.46 Total: -116.28 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.33 Total: -24.73 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -66.72 2.30 -64.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331567489.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.653 kcal (2) G-P(sol) polarization free energy of solvation -66.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds