Wall clock time and date at job start Tue Mar 31 2020 20:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30834 * 125.90113 * 2 1 4 4 N 1.40087 * 108.20747 * 180.02562 * 3 2 1 5 5 C 1.46502 * 126.03702 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47248 * 90.02234 * 5 4 3 7 7 H 1.07996 * 120.00021 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99984 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00229 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00191 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46824 * 59.99741 * 10 8 6 12 12 H 1.48497 * 109.47340 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47048 * 300.00142 * 10 8 6 14 14 C 1.34944 * 107.92183 * 359.75018 * 4 3 2 15 15 C 1.50704 * 126.12514 * 180.23690 * 14 4 3 16 16 C 1.35309 * 107.75085 * 0.39352 * 14 4 3 17 17 C 1.50703 * 126.04314 * 179.87249 * 16 14 4 18 18 C 1.53000 * 109.46912 * 269.71196 * 17 16 14 19 19 C 1.50703 * 109.46912 * 179.97438 * 18 17 16 20 20 O 1.21278 * 119.99985 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00161 * 180.02562 * 19 18 17 22 22 C 1.47025 * 125.64375 * 0.02562 * 21 19 18 23 23 C 1.54324 * 107.26762 * 178.90565 * 22 21 19 24 24 C 1.55152 * 102.94387 * 337.81288 * 23 22 21 25 25 H 1.09001 * 111.00095 * 277.42377 * 24 23 22 26 26 C 1.53005 * 111.00553 * 153.57783 * 24 23 22 27 27 O 1.42895 * 109.47225 * 66.45067 * 26 24 23 28 28 C 1.47423 * 125.65106 * 179.71993 * 21 19 18 29 29 H 1.09010 * 109.47279 * 269.98172 * 1 2 3 30 30 H 1.08995 * 109.47332 * 29.97818 * 1 2 3 31 31 H 1.08997 * 109.47471 * 149.98188 * 1 2 3 32 32 H 1.08999 * 109.46881 * 210.02107 * 5 4 3 33 33 H 1.08999 * 109.46947 * 330.02144 * 5 4 3 34 34 H 0.97002 * 120.00400 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.47565 * 270.18224 * 15 14 4 36 36 H 1.09005 * 109.46744 * 30.18822 * 15 14 4 37 37 H 1.09006 * 109.46922 * 150.17318 * 15 14 4 38 38 H 1.09001 * 109.46980 * 149.71323 * 17 16 14 39 39 H 1.08992 * 109.47158 * 29.71429 * 17 16 14 40 40 H 1.09002 * 109.47398 * 300.00078 * 18 17 16 41 41 H 1.09001 * 109.47194 * 60.00258 * 18 17 16 42 42 H 1.08990 * 109.88935 * 298.32613 * 22 21 19 43 43 H 1.09006 * 109.88388 * 59.34018 * 22 21 19 44 44 H 1.09009 * 110.71735 * 96.17435 * 23 22 21 45 45 H 1.09004 * 110.72401 * 219.26992 * 23 22 21 46 46 H 1.09001 * 109.47085 * 186.45427 * 26 24 23 47 47 H 1.09003 * 109.46809 * 306.44997 * 26 24 23 48 48 H 0.96708 * 113.99846 * 180.02562 * 27 26 24 49 49 H 1.09005 * 110.36043 * 322.99348 * 28 21 19 50 50 H 1.08994 * 110.37099 * 85.31873 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7899 1.5007 -0.0013 6 6 5.1960 1.7977 1.4192 7 1 4.6306 1.3827 2.2404 8 6 6.2887 2.6000 1.6704 9 7 6.9770 3.1057 0.6704 10 14 6.7917 2.9687 3.4313 11 1 7.1107 1.6984 4.1312 12 1 7.9890 3.8471 3.4305 13 1 5.6755 3.6531 4.1319 14 6 3.6142 -0.7154 0.0046 15 6 4.8350 -1.5990 0.0111 16 6 2.3272 -1.1331 -0.0004 17 6 1.8599 -2.5658 0.0000 18 6 1.7013 -3.0509 -1.4424 19 6 1.2347 -4.4839 -1.4420 20 8 1.0478 -5.0604 -0.3915 21 7 1.0260 -5.1250 -2.6090 22 6 1.2142 -4.5490 -3.9486 23 6 0.8836 -5.6547 -4.9732 24 6 1.0741 -6.9574 -4.1523 25 1 2.1243 -7.2471 -4.1174 26 6 0.2133 -8.0906 -4.7144 27 8 0.6848 -8.4465 -6.0156 28 6 0.5773 -6.5218 -2.7537 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 5.6090 0.9981 -0.5158 33 1 4.5560 2.4332 -0.5149 34 1 7.7461 3.6699 0.8471 35 1 5.1338 -1.8134 -1.0150 36 1 5.6489 -1.0904 0.5279 37 1 4.6053 -2.5323 0.5253 38 1 0.9012 -2.6352 0.5141 39 1 2.5934 -3.1871 0.5137 40 1 0.9677 -2.4296 -1.9562 41 1 2.6600 -2.9816 -1.9565 42 1 0.5413 -3.7028 -4.0862 43 1 2.2476 -4.2244 -4.0706 44 1 -0.1460 -5.5641 -5.3195 45 1 1.5763 -5.6208 -5.8142 46 1 0.2771 -8.9565 -4.0554 47 1 -0.8234 -7.7606 -4.7813 48 1 0.1841 -9.1604 -6.4337 49 1 1.0248 -7.1460 -1.9803 50 1 -0.5102 -6.5779 -2.7056 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362606030.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:48 Heat of formation + Delta-G solvation = -57.785217 kcal Electronic energy + Delta-G solvation = -28696.980233 eV Core-core repulsion = 24723.853838 eV Total energy + Delta-G solvation = -3973.126395 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.16216 -41.09263 -39.00734 -37.19829 -36.10096 -34.87786 -34.18952 -33.16589 -31.66231 -30.52561 -30.38826 -28.35101 -27.62506 -26.63648 -25.06857 -24.11451 -23.39129 -21.35504 -20.36545 -20.23109 -20.02765 -18.82423 -18.31165 -18.06344 -17.42679 -17.23718 -16.60515 -16.24063 -16.14710 -15.72033 -15.42994 -14.86101 -14.73429 -14.49603 -14.46591 -14.31992 -14.05855 -14.01165 -13.83602 -13.70161 -13.45603 -13.37536 -13.24132 -13.17092 -12.90798 -12.84077 -12.74573 -12.61820 -12.56978 -12.22687 -12.19319 -11.94513 -11.85105 -11.73192 -11.58447 -11.16766 -10.88615 -10.82275 -10.75785 -9.83683 -9.66848 -9.03578 -8.35328 -6.53230 1.16996 1.35530 1.36955 1.46085 1.63195 1.82334 1.93933 2.08651 2.32563 2.93902 3.16578 3.55983 3.62890 3.79680 3.88259 3.94539 4.15845 4.20922 4.24795 4.29835 4.31524 4.38657 4.46064 4.55096 4.58009 4.62829 4.69218 4.71245 4.73964 4.77066 4.81049 4.85243 4.87167 4.90553 4.94841 4.99032 5.04198 5.12964 5.14253 5.26128 5.31051 5.37724 5.43217 5.49513 5.56048 5.79793 6.04955 6.31351 6.48197 6.61782 6.94052 7.11303 7.15838 7.18099 8.70384 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.002077 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.497165 B =13476.807055 C =13842.132335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.055 3.945 3 N -0.349 5.349 4 N -0.355 5.355 5 C 0.276 3.724 6 C -0.554 4.554 7 H 0.047 0.953 8 C 0.022 3.978 9 N -0.917 5.917 10 Si 0.970 3.030 11 H -0.266 1.266 12 H -0.271 1.271 13 H -0.276 1.276 14 C 0.079 3.921 15 C -0.087 4.087 16 C -0.258 4.258 17 C -0.003 4.003 18 C -0.118 4.118 19 C 0.530 3.470 20 O -0.581 6.581 21 N -0.623 5.623 22 C 0.092 3.908 23 C -0.113 4.113 24 C -0.100 4.100 25 H 0.080 0.920 26 C 0.090 3.910 27 O -0.591 6.591 28 C 0.110 3.890 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.020 0.980 34 H 0.274 0.726 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.399 0.601 49 H 0.066 0.934 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.367 -22.929 -13.884 30.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 N -0.172 5.172 4 N -0.135 5.135 5 C 0.157 3.843 6 C -0.592 4.592 7 H 0.065 0.935 8 C -0.179 4.179 9 N -0.555 5.555 10 Si 0.794 3.206 11 H -0.190 1.190 12 H -0.196 1.196 13 H -0.201 1.201 14 C -0.051 4.051 15 C -0.145 4.145 16 C -0.269 4.269 17 C -0.042 4.042 18 C -0.158 4.158 19 C 0.320 3.680 20 O -0.461 6.461 21 N -0.356 5.356 22 C -0.031 4.031 23 C -0.151 4.151 24 C -0.119 4.119 25 H 0.099 0.901 26 C 0.012 3.988 27 O -0.400 6.400 28 C -0.012 4.012 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.249 0.751 49 H 0.085 0.915 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.690 -21.195 -13.206 28.479 hybrid contribution 0.305 -0.453 0.837 0.999 sum -13.386 -21.648 -12.369 28.298 Atomic orbital electron populations 1.20203 0.84689 1.03835 1.03344 1.22781 0.98126 0.90149 0.99980 1.77200 0.87823 1.24976 1.27243 1.49003 1.05314 1.05093 1.54107 1.19119 0.78981 0.88766 0.97483 1.21404 1.13472 1.32502 0.91856 0.93514 1.25742 0.95450 0.94453 1.02259 1.69991 1.19364 1.33177 1.33014 0.85428 0.77817 0.78671 0.78715 1.19040 1.19551 1.20146 1.21436 0.98158 0.84715 1.00767 1.20475 0.92430 0.97753 1.03824 1.19691 0.90423 0.96405 1.20419 1.19360 1.01334 0.88476 0.95062 1.21597 1.03935 0.90780 0.99475 1.20764 0.76201 0.89203 0.81785 1.90683 1.53928 1.69478 1.32043 1.48593 1.66889 1.13772 1.06386 1.22319 1.02570 0.97704 0.80464 1.22606 1.03690 0.91786 0.97001 1.22230 1.00797 0.95586 0.93332 0.90149 1.21995 0.96493 0.96157 0.84170 1.86413 1.61825 1.59906 1.31817 1.22105 0.99948 0.82310 0.96853 0.90344 0.91020 0.88494 0.93545 0.96230 0.91711 0.88934 0.92247 0.88404 0.91080 0.91860 0.87483 0.88184 0.89749 0.90597 0.89433 0.89195 0.92466 0.91838 0.75076 0.91498 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.66 10.12 71.24 0.72 -0.94 16 2 C 0.05 2.06 7.22 43.10 0.31 2.37 16 3 N -0.35 -16.50 12.58 -47.38 -0.60 -17.10 16 4 N -0.36 -17.21 3.60 -338.41 -1.22 -18.42 16 5 C 0.28 14.91 5.82 85.63 0.50 15.41 16 6 C -0.55 -31.84 9.39 25.60 0.24 -31.60 16 7 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 8 C 0.02 1.23 5.46 84.65 0.46 1.69 16 9 N -0.92 -52.70 13.29 21.44 0.28 -52.42 16 10 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 14 C 0.08 3.17 6.93 41.41 0.29 3.46 16 15 C -0.09 -2.86 9.68 71.24 0.69 -2.17 16 16 C -0.26 -9.08 5.35 -20.14 -0.11 -9.18 16 17 C 0.00 -0.09 4.45 29.85 0.13 0.04 16 18 C -0.12 -2.59 4.87 29.85 0.15 -2.44 16 19 C 0.53 12.62 7.85 87.66 0.69 13.31 16 20 O -0.58 -18.37 16.24 -3.02 -0.05 -18.42 16 21 N -0.62 -11.20 3.33 -812.26 -2.70 -13.90 16 22 C 0.09 1.12 6.49 86.73 0.56 1.68 16 23 C -0.11 -1.10 6.29 31.78 0.20 -0.90 16 24 C -0.10 -1.13 3.31 -9.48 -0.03 -1.16 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 C 0.09 0.70 6.49 71.98 0.47 1.17 16 27 O -0.59 -5.52 13.51 -148.98 -2.01 -7.54 16 28 C 0.11 1.65 6.37 86.78 0.55 2.20 16 29 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.10 2.00 7.92 -2.39 -0.02 1.98 16 32 H 0.05 2.49 7.68 -2.39 -0.02 2.47 16 33 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.06 2.23 7.74 -2.38 -0.02 2.21 16 37 H 0.10 2.72 7.14 -2.38 -0.02 2.71 16 38 H 0.07 1.98 7.88 -2.39 -0.02 1.96 16 39 H 0.06 1.85 7.09 -2.39 -0.02 1.83 16 40 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.09 0.69 8.01 -2.38 -0.02 0.67 16 45 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 46 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.06 0.33 8.11 -2.39 -0.02 0.31 16 48 H 0.40 0.26 9.12 -74.05 -0.68 -0.42 16 49 H 0.07 1.19 8.04 -2.38 -0.02 1.17 16 50 H 0.08 1.01 8.03 -2.39 -0.02 0.99 16 Total: -1.00 -76.32 411.91 1.80 -74.51 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.25 Total: 14.36 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 5.82 Total: -7.08 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -4.23 Total: -101.84 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -2.06 Total: -25.96 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -76.32 1.80 -74.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362606030.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.727 kcal (2) G-P(sol) polarization free energy of solvation -76.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds