Wall clock time and date at job start Tue Mar 31 2020 20:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30837 * 125.89758 * 2 1 4 4 N 1.40088 * 108.20102 * 180.25844 * 3 2 1 5 5 C 1.46503 * 126.03334 * 179.73801 * 4 3 2 6 6 C 1.50701 * 109.47229 * 269.97805 * 5 4 3 7 7 H 1.08002 * 120.00071 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99537 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00265 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99560 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47177 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47193 * 120.00177 * 10 8 6 13 13 H 1.48506 * 109.46929 * 240.00111 * 10 8 6 14 14 C 1.34942 * 107.92719 * 359.72730 * 4 3 2 15 15 C 1.50700 * 126.12653 * 179.97438 * 14 4 3 16 16 C 1.35319 * 107.74725 * 359.97438 * 14 4 3 17 17 C 1.50694 * 126.04131 * 180.02562 * 16 14 4 18 18 C 1.53003 * 109.47049 * 90.00319 * 17 16 14 19 19 C 1.50704 * 109.47102 * 180.02562 * 18 17 16 20 20 O 1.21276 * 119.99955 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00169 * 179.97438 * 19 18 17 22 22 C 1.47471 * 125.62717 * 0.02852 * 21 19 18 23 23 C 1.54906 * 104.81210 * 204.04395 * 22 21 19 24 24 C 1.55156 * 101.61451 * 323.04512 * 23 22 21 25 25 H 1.09005 * 110.72052 * 277.11432 * 24 23 22 26 26 O 1.42905 * 110.71725 * 153.84666 * 24 23 22 27 27 C 1.47017 * 125.65312 * 179.97438 * 21 19 18 28 28 H 1.09007 * 109.88177 * 298.41952 * 27 21 19 29 29 C 1.53001 * 110.00950 * 59.50934 * 27 21 19 30 30 H 1.09006 * 109.47173 * 270.20928 * 1 2 3 31 31 H 1.09000 * 109.47158 * 30.20174 * 1 2 3 32 32 H 1.08994 * 109.47449 * 150.20798 * 1 2 3 33 33 H 1.08997 * 109.47202 * 29.98297 * 5 4 3 34 34 H 1.09001 * 109.46928 * 149.98105 * 5 4 3 35 35 H 0.96995 * 119.99616 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.46871 * 270.01484 * 15 14 4 37 37 H 1.08998 * 109.47190 * 30.01793 * 15 14 4 38 38 H 1.09007 * 109.47156 * 150.02281 * 15 14 4 39 39 H 1.09002 * 109.47109 * 330.00255 * 17 16 14 40 40 H 1.09003 * 109.47369 * 209.99872 * 17 16 14 41 41 H 1.09002 * 109.47217 * 60.00002 * 18 17 16 42 42 H 1.09000 * 109.46973 * 299.99547 * 18 17 16 43 43 H 1.09008 * 110.34870 * 85.22524 * 22 21 19 44 44 H 1.09001 * 110.40581 * 322.89560 * 22 21 19 45 45 H 1.09002 * 111.00655 * 204.94912 * 23 22 21 46 46 H 1.09002 * 111.00329 * 81.13838 * 23 22 21 47 47 H 0.96702 * 113.99882 * 61.45072 * 26 24 23 48 48 H 1.08996 * 109.47588 * 177.88862 * 29 27 21 49 49 H 1.09003 * 109.47007 * 297.89164 * 29 27 21 50 50 H 1.09000 * 109.47140 * 57.88642 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6340 -0.0060 5 6 4.7899 1.5008 -0.0134 6 6 5.1880 1.7951 -1.4368 7 1 4.6180 1.3786 -2.2541 8 6 6.2801 2.5961 -1.6955 9 7 6.9744 3.1029 -0.7002 10 14 6.7732 2.9615 -3.4598 11 1 5.8372 2.2768 -4.3874 12 1 6.7206 4.4268 -3.6951 13 1 8.1542 2.4709 -3.6995 14 6 3.6142 -0.7154 -0.0035 15 6 4.8350 -1.5989 -0.0086 16 6 2.3271 -1.1330 0.0044 17 6 1.8599 -2.5657 0.0103 18 6 1.7095 -3.0472 1.4548 19 6 1.2428 -4.4801 1.4606 20 8 1.0500 -5.0594 0.4127 21 7 1.0407 -5.1183 2.6304 22 6 1.2362 -4.5365 3.9713 23 6 1.4867 -5.7523 4.8979 24 6 0.5252 -6.8093 4.2932 25 1 -0.4876 -6.6707 4.6719 26 8 0.9919 -8.1321 4.5661 27 6 0.5880 -6.5089 2.7809 28 1 -0.4010 -6.6268 2.3379 29 6 1.5781 -7.4581 2.1028 30 1 -0.3634 0.0038 1.0277 31 1 -0.3633 0.8882 -0.5170 32 1 -0.3634 -0.8918 -0.5106 33 1 4.5588 2.4342 0.4997 34 1 5.6118 0.9992 0.4974 35 1 7.7424 3.6667 -0.8823 36 1 5.1237 -1.8137 -1.0375 37 1 5.6538 -1.0902 0.5000 38 1 4.6102 -2.5322 0.5079 39 1 2.5906 -3.1883 -0.5060 40 1 0.8983 -2.6364 -0.4982 41 1 0.9788 -2.4246 1.9711 42 1 2.6710 -2.9766 1.9633 43 1 0.3416 -3.9983 4.2851 44 1 2.1003 -3.8721 3.9751 45 1 1.2153 -5.5211 5.9280 46 1 2.5228 -6.0850 4.8344 47 1 1.0450 -8.3439 5.5082 48 1 1.2542 -8.4881 2.2517 49 1 1.6174 -7.2402 1.0355 50 1 2.5681 -7.3220 2.5380 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362696786.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:05 Heat of formation + Delta-G solvation = -28.820833 kcal Electronic energy + Delta-G solvation = -29205.993552 eV Core-core repulsion = 25234.123148 eV Total energy + Delta-G solvation = -3971.870405 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.72527 -40.41108 -38.37624 -35.90713 -34.40801 -33.41711 -32.48546 -31.61584 -31.20017 -29.94878 -28.95622 -26.75137 -25.90644 -25.87343 -24.20506 -23.03560 -22.18030 -20.94727 -19.14734 -18.79965 -18.63406 -17.91516 -17.29185 -16.70943 -15.95887 -15.75728 -15.45009 -14.90568 -14.67639 -14.50794 -14.30316 -14.26127 -13.78748 -13.40553 -13.13330 -12.95664 -12.93371 -12.71451 -12.51184 -12.42716 -12.30375 -12.20175 -12.10363 -11.95554 -11.78588 -11.64404 -11.54651 -11.33064 -11.24342 -10.95715 -10.94838 -10.82136 -10.70865 -10.44605 -10.26384 -9.81691 -9.70496 -9.59485 -8.90108 -8.65713 -8.17844 -7.47080 -6.27136 -4.34201 2.59688 2.61780 2.79459 3.19667 3.27629 3.33502 3.38710 3.61761 3.63738 4.05555 4.10686 4.29372 4.51856 4.64302 4.75029 4.91244 5.06702 5.10440 5.17296 5.20053 5.23731 5.27681 5.32342 5.35031 5.41891 5.58362 5.60951 5.65930 5.74384 5.81941 5.85610 5.94306 5.98548 6.02964 6.06090 6.14690 6.22848 6.24754 6.37517 6.46313 6.55497 6.86135 7.02726 7.11588 7.11819 7.31481 7.51897 7.66244 7.87931 8.05641 8.10716 8.66996 8.75638 9.32356 10.80513 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020003 B = 0.002267 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.419689 B =12345.625635 C =12664.147365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.534 4.534 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.094 3.906 15 C -0.086 4.086 16 C -0.269 4.269 17 C -0.011 4.011 18 C -0.128 4.128 19 C 0.532 3.468 20 O -0.533 6.533 21 N -0.622 5.622 22 C 0.100 3.900 23 C -0.167 4.167 24 C 0.096 3.904 25 H 0.074 0.926 26 O -0.553 6.553 27 C 0.141 3.859 28 H 0.079 0.921 29 C -0.148 4.148 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.267 0.733 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.381 0.619 48 H 0.069 0.931 49 H 0.067 0.933 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.809 -19.287 14.123 26.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 N -0.121 5.121 4 N -0.105 5.105 5 C 0.139 3.861 6 C -0.572 4.572 7 H 0.083 0.917 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.038 4.038 15 C -0.144 4.144 16 C -0.281 4.281 17 C -0.050 4.050 18 C -0.168 4.168 19 C 0.322 3.678 20 O -0.409 6.409 21 N -0.359 5.359 22 C -0.023 4.023 23 C -0.206 4.206 24 C 0.036 3.964 25 H 0.092 0.908 26 O -0.358 6.358 27 C 0.037 3.963 28 H 0.097 0.903 29 C -0.206 4.206 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.228 0.772 48 H 0.088 0.912 49 H 0.086 0.914 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.535 -18.045 12.858 24.980 hybrid contribution 0.447 -0.304 -0.096 0.549 sum -11.088 -18.349 12.762 24.950 Atomic orbital electron populations 1.20024 0.88071 1.02436 1.01773 1.21939 0.96101 0.90767 1.02549 1.77273 0.87493 1.22659 1.24690 1.49243 1.05781 1.04202 1.51240 1.19656 0.77980 0.89529 0.98935 1.21347 1.12926 1.31624 0.91350 0.91749 1.24932 0.95706 0.95030 0.98167 1.69926 1.18931 1.33070 1.31100 0.86306 0.78394 0.78291 0.83742 1.19554 1.20621 1.20638 1.20771 0.96115 0.85671 1.01200 1.20349 0.93753 0.97115 1.03201 1.19338 0.91347 0.95053 1.22330 1.19401 1.01647 0.90912 0.93018 1.21739 1.02825 0.90843 1.01345 1.20764 0.76486 0.88960 0.81608 1.90690 1.51156 1.68352 1.30686 1.48658 1.68482 1.12661 1.06073 1.22275 1.02141 0.96069 0.81858 1.23532 1.01626 0.95916 0.99495 1.22757 0.96442 0.82406 0.94811 0.90829 1.86539 1.89122 1.30105 1.30054 1.21340 0.99001 0.82245 0.93693 0.90302 1.21845 0.98603 0.98960 1.01225 0.91647 0.91574 0.91232 0.93085 0.93116 0.92321 0.90428 0.90947 0.91135 0.91377 0.91237 0.89059 0.89173 0.90897 0.89787 0.89518 0.89493 0.77177 0.91223 0.91377 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.26 36.01 0.37 -0.55 16 2 C 0.05 0.97 7.22 -82.41 -0.59 0.37 16 3 N -0.30 -6.84 12.58 33.67 0.42 -6.42 16 4 N -0.33 -7.60 3.60 -58.31 -0.21 -7.81 16 5 C 0.26 6.59 6.00 -5.19 -0.03 6.56 16 6 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 7 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -25.16 13.29 55.43 0.74 -24.43 16 10 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.09 1.87 6.93 -82.27 -0.57 1.30 16 15 C -0.09 -1.42 9.72 36.01 0.35 -1.07 16 16 C -0.27 -4.81 5.35 -105.06 -0.56 -5.37 16 17 C -0.01 -0.16 4.41 -27.88 -0.12 -0.28 16 18 C -0.13 -1.50 4.69 -27.88 -0.13 -1.64 16 19 C 0.53 6.68 7.63 -10.98 -0.08 6.59 16 20 O -0.53 -8.53 14.89 5.56 0.08 -8.45 16 21 N -0.62 -6.11 3.08 -162.98 -0.50 -6.62 16 22 C 0.10 0.65 6.69 -2.50 -0.02 0.64 16 23 C -0.17 -0.83 6.80 -24.58 -0.17 -1.00 16 24 C 0.10 0.58 4.19 -24.90 -0.10 0.48 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 O -0.55 -3.39 11.77 -35.23 -0.41 -3.80 16 27 C 0.14 1.31 3.48 -66.96 -0.23 1.08 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 C -0.15 -1.57 8.48 37.16 0.31 -1.25 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.87 7.25 -51.93 -0.38 0.50 16 33 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.05 1.29 7.05 -51.93 -0.37 0.92 16 35 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.22 7.08 -51.93 -0.37 0.85 16 38 H 0.07 0.95 7.77 -51.93 -0.40 0.54 16 39 H 0.07 1.04 7.73 -51.93 -0.40 0.64 16 40 H 0.07 1.02 7.21 -51.93 -0.37 0.65 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.09 1.00 7.85 -51.93 -0.41 0.59 16 43 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 44 H 0.08 0.53 7.48 -51.93 -0.39 0.14 16 45 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 46 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.38 0.68 9.11 45.56 0.42 1.09 16 48 H 0.07 0.69 7.50 -51.93 -0.39 0.30 16 49 H 0.07 0.87 6.77 -51.93 -0.35 0.52 16 50 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 405.24 15.07 6.11 6.11 Total: -1.00 -33.96 405.24 -8.41 -42.37 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.61 Total: 0.38 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -2.00 Total: -7.61 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.45 Total: -45.27 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.33 Total: -12.25 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.96 -8.41 -42.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362696786.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.545 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds