Wall clock time and date at job start Tue Mar 31 2020 20:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47041 * 179.97438 * 7 6 4 9 9 C 1.53007 * 109.46941 * 299.99637 * 8 7 6 10 10 C 1.52991 * 109.47452 * 59.99717 * 8 7 6 11 11 C 1.50696 * 109.46779 * 179.97438 * 8 7 6 12 12 H 1.08004 * 120.00332 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99857 * 179.97438 * 11 8 7 14 14 N 1.31515 * 119.99888 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99895 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47213 * 90.00589 * 15 13 11 17 17 H 1.48504 * 109.47159 * 210.00248 * 15 13 11 18 18 H 1.48494 * 109.47271 * 330.00136 * 15 13 11 19 19 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 20 20 N 1.30448 * 108.02337 * 359.61207 * 19 3 2 21 21 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 22 22 C 1.46503 * 125.75762 * 359.97438 * 21 2 1 23 23 C 1.53179 * 109.54105 * 239.82425 * 22 21 2 24 24 C 1.53109 * 109.15288 * 183.23970 * 23 22 21 25 25 O 1.42901 * 109.48417 * 57.47518 * 24 23 22 26 26 C 1.42898 * 114.09913 * 298.88458 * 25 24 23 27 27 C 1.53093 * 109.41332 * 61.16149 * 26 25 24 28 28 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 29 29 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 30 30 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 31 31 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 32 32 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 33 33 H 1.08993 * 109.47306 * 59.99553 * 7 6 4 34 34 H 1.08992 * 109.47188 * 60.00196 * 9 8 7 35 35 H 1.08994 * 109.46777 * 180.02562 * 9 8 7 36 36 H 1.08998 * 109.46728 * 300.00543 * 9 8 7 37 37 H 1.09004 * 109.47246 * 59.99654 * 10 8 7 38 38 H 1.09001 * 109.47264 * 180.02562 * 10 8 7 39 39 H 1.09002 * 109.47025 * 300.00008 * 10 8 7 40 40 H 0.97000 * 119.99443 * 179.97438 * 14 13 11 41 41 H 1.08000 * 125.99145 * 179.77305 * 19 3 2 42 42 H 1.08994 * 109.54202 * 359.97438 * 22 21 2 43 43 H 1.09001 * 109.52574 * 303.05444 * 23 22 21 44 44 H 1.08997 * 109.52573 * 63.24749 * 23 22 21 45 45 H 1.08992 * 109.40709 * 297.49182 * 24 23 22 46 46 H 1.08999 * 109.47966 * 177.50367 * 24 23 22 47 47 H 1.09000 * 109.48275 * 301.18017 * 26 25 24 48 48 H 1.09000 * 109.48065 * 181.14075 * 26 25 24 49 49 H 1.09007 * 109.52113 * 182.48224 * 27 26 25 50 50 H 1.09001 * 109.57215 * 62.32930 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 3.5902 5.8251 0.0127 9 6 4.4241 5.5506 1.2658 10 6 4.4367 5.5546 -1.2327 11 6 3.1422 7.2640 0.0121 12 1 2.0886 7.5016 0.0064 13 6 4.0773 8.2772 0.0188 14 7 5.3603 7.9878 0.0251 15 14 3.5220 10.0607 0.0173 16 1 3.3666 10.5319 1.4170 17 1 4.5368 10.8945 -0.6758 18 1 2.2215 10.1737 -0.6904 19 6 3.6589 0.6498 -0.0059 20 7 3.6340 -0.6545 -0.0007 21 7 2.3016 -1.0822 -0.0005 22 6 1.8500 -2.4759 -0.0006 23 6 2.3827 -3.1872 1.2470 24 6 1.9740 -4.6619 1.1975 25 8 2.4743 -5.2551 -0.0024 26 6 1.9714 -4.6609 -1.2007 27 6 2.3819 -3.1868 -1.2487 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 3.7462 3.2972 0.0098 32 1 1.7699 5.1049 -0.8874 33 1 1.7618 5.1023 0.8925 34 1 4.7481 4.5100 1.2658 35 1 5.2970 6.2033 1.2713 36 1 3.8210 5.7434 2.1530 37 1 3.8426 5.7501 -2.1254 38 1 5.3101 6.2066 -1.2270 39 1 4.7607 4.5138 -1.2326 40 1 6.0181 8.7007 0.0295 41 1 4.5448 1.2675 -0.0108 42 1 0.7604 -2.5061 0.0003 43 1 3.4699 -3.1125 1.2727 44 1 1.9636 -2.7214 2.1389 45 1 0.8869 -4.7372 1.2144 46 1 2.3881 -5.1830 2.0607 47 1 0.8841 -4.7361 -1.2153 48 1 2.3836 -5.1813 -2.0652 49 1 1.9621 -2.7206 -2.1402 50 1 3.4689 -3.1111 -1.2757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363397492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:44 Heat of formation + Delta-G solvation = -22.624555 kcal Electronic energy + Delta-G solvation = -29352.110858 eV Core-core repulsion = 25380.509145 eV Total energy + Delta-G solvation = -3971.601714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.64657 -39.67984 -38.69996 -36.25494 -35.07877 -33.27608 -32.40561 -31.70656 -31.06516 -30.28232 -27.52066 -25.75355 -25.68358 -25.31104 -24.59040 -24.14658 -22.42514 -21.45277 -19.80204 -19.51739 -18.65801 -17.64208 -16.60185 -16.52115 -16.13145 -15.71309 -15.62702 -15.33015 -14.92504 -14.62167 -14.53373 -14.24143 -13.99682 -13.94443 -13.26416 -13.16174 -13.02090 -12.85189 -12.81878 -12.62017 -12.41934 -12.13161 -11.92352 -11.87081 -11.49454 -11.33354 -11.17862 -11.05855 -10.83640 -10.73283 -10.66717 -10.34522 -10.22613 -10.17077 -9.59069 -9.49706 -9.44778 -9.19702 -8.75069 -8.66829 -8.38197 -8.16392 -5.99202 -4.08983 1.52317 2.11256 2.26445 3.30103 3.33968 3.37080 3.40896 3.81353 3.84477 4.02506 4.11694 4.32408 4.36968 4.42588 4.43424 4.64412 4.66186 4.81102 4.90666 4.95289 5.06039 5.14154 5.21893 5.27498 5.31083 5.39792 5.43461 5.50838 5.58493 5.70766 5.84879 6.03245 6.28782 6.38800 6.43108 6.57094 6.63496 6.77095 6.84456 6.87261 6.99584 7.06715 7.12491 7.40488 7.51908 7.59860 7.72667 8.04994 8.13879 8.24698 8.42451 8.83218 8.92526 9.56558 11.02178 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031974 B = 0.002123 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.505714 B =13184.707235 C =13545.238068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.149 3.851 3 C -0.286 4.286 4 C 0.584 3.416 5 O -0.561 6.561 6 N -0.712 5.712 7 C 0.135 3.865 8 C 0.055 3.945 9 C -0.131 4.131 10 C -0.131 4.131 11 C -0.504 4.504 12 H 0.057 0.943 13 C 0.065 3.935 14 N -0.886 5.886 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.083 3.917 20 N -0.296 5.296 21 N -0.360 5.360 22 C 0.161 3.839 23 C -0.165 4.165 24 C 0.065 3.935 25 O -0.379 6.379 26 C 0.065 3.935 27 C -0.164 4.164 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.396 0.604 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.006 0.994 35 H 0.085 0.915 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.085 0.915 39 H 0.006 0.994 40 H 0.259 0.741 41 H 0.189 0.811 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.102 0.898 47 H 0.055 0.945 48 H 0.102 0.898 49 H 0.080 0.920 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.072 -25.185 -0.053 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.017 3.983 3 C -0.301 4.301 4 C 0.371 3.629 5 O -0.442 6.442 6 N -0.362 5.362 7 C 0.012 3.988 8 C 0.055 3.945 9 C -0.189 4.189 10 C -0.188 4.188 11 C -0.543 4.543 12 H 0.075 0.925 13 C -0.136 4.136 14 N -0.525 5.525 15 Si 0.721 3.279 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.105 4.105 20 N -0.114 5.114 21 N -0.141 5.141 22 C 0.059 3.941 23 C -0.203 4.203 24 C -0.012 4.012 25 O -0.298 6.298 26 C -0.012 4.012 27 C -0.203 4.203 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.231 0.769 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.025 0.975 35 H 0.104 0.896 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.025 0.975 40 H 0.070 0.930 41 H 0.206 0.794 42 H 0.121 0.879 43 H 0.109 0.891 44 H 0.099 0.901 45 H 0.073 0.927 46 H 0.120 0.880 47 H 0.073 0.927 48 H 0.120 0.880 49 H 0.099 0.901 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.922 -26.217 -0.055 26.878 hybrid contribution -0.304 2.013 -0.002 2.036 sum -6.226 -24.204 -0.058 24.992 Atomic orbital electron populations 1.20671 0.86355 1.04574 1.03999 1.21485 0.94792 0.86259 0.95716 1.20204 0.92729 0.94060 1.23068 1.17217 0.85740 0.83576 0.76347 1.90681 1.16677 1.84412 1.52452 1.46074 1.09326 1.07158 1.73598 1.21691 0.98927 0.77727 1.00436 1.18359 0.90018 0.93335 0.92822 1.21828 1.02311 0.97133 0.97583 1.21827 1.02298 0.97131 0.97583 1.20986 0.92969 0.89641 1.50680 0.92451 1.24884 0.94907 0.98907 0.94882 1.69807 0.99957 1.32023 1.50667 0.86580 0.78432 0.84825 0.78073 1.20753 1.21313 1.19930 1.24082 0.97460 0.91908 0.97001 1.77107 0.96009 1.13111 1.25222 1.48520 1.04137 1.05250 1.56145 1.21363 0.99153 0.76715 0.96877 1.22591 1.04221 0.96262 0.97259 1.22585 0.98503 0.91896 0.88245 1.87982 1.70083 1.58040 1.13647 1.22587 0.98481 0.91876 0.88286 1.22578 1.04198 0.96257 0.97230 0.89728 0.91685 0.87237 0.76894 0.92749 0.92754 0.97462 0.89628 0.95460 0.95449 0.89634 0.97475 0.93048 0.79386 0.87892 0.89131 0.90072 0.92750 0.87959 0.92723 0.87960 0.90090 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 9.40 36.01 0.34 -0.69 16 2 C 0.15 1.93 7.01 -81.61 -0.57 1.36 16 3 C -0.29 -4.33 6.13 -105.07 -0.64 -4.98 16 4 C 0.58 10.58 7.81 -12.52 -0.10 10.49 16 5 O -0.56 -11.54 14.84 5.28 0.08 -11.46 16 6 N -0.71 -13.03 4.95 -61.38 -0.30 -13.33 16 7 C 0.13 2.88 4.50 -4.04 -0.02 2.86 16 8 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 9 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 10 C -0.13 -2.96 8.08 37.15 0.30 -2.66 16 11 C -0.50 -13.22 8.01 -34.44 -0.28 -13.49 16 12 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 13 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 14 N -0.89 -23.66 9.35 55.43 0.52 -23.14 16 15 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 19 C 0.08 1.13 11.50 -16.98 -0.20 0.94 16 20 N -0.30 -3.97 12.33 30.86 0.38 -3.59 16 21 N -0.36 -4.18 3.26 -49.99 -0.16 -4.34 16 22 C 0.16 1.31 2.98 -67.75 -0.20 1.11 16 23 C -0.16 -1.24 5.68 -26.58 -0.15 -1.39 16 24 C 0.07 0.39 6.84 37.21 0.25 0.64 16 25 O -0.38 -3.01 10.77 -35.23 -0.38 -3.39 16 26 C 0.07 0.39 6.84 37.21 0.25 0.64 16 27 C -0.16 -1.23 5.68 -26.60 -0.15 -1.38 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.48 7.07 -51.93 -0.37 0.11 16 30 H 0.11 1.40 6.50 -51.93 -0.34 1.06 16 31 H 0.40 6.58 5.12 -40.82 -0.21 6.37 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 35 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 39 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 40 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 41 H 0.19 2.14 7.50 -52.49 -0.39 1.75 16 42 H 0.10 0.64 6.63 -51.93 -0.34 0.29 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 391.13 15.07 5.89 5.89 Total: -1.00 -30.74 391.13 -8.06 -38.80 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -8.03 Total: 5.17 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -1.03 Total: -6.37 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.43 Total: -44.40 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.30 Total: -14.85 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.74 -8.06 -38.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363397492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.171 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds