Wall clock time and date at job start Tue Mar 31 2020 19:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39804 * 120.08809 * 2 1 4 4 C 1.36021 * 119.08121 * 180.24547 * 3 2 1 5 5 C 1.50706 * 120.40453 * 179.74089 * 4 3 2 6 6 N 1.35868 * 119.19317 * 359.46558 * 4 3 2 7 7 C 1.46501 * 119.93974 * 180.29558 * 6 4 3 8 8 C 1.50699 * 109.46947 * 90.00173 * 7 6 4 9 9 O 1.21286 * 120.00126 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99760 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00212 * 0.02562 * 10 8 7 12 12 C 1.50699 * 109.47133 * 89.99647 * 11 10 8 13 13 H 1.08001 * 120.00190 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99649 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00379 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99934 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47073 * 90.00163 * 16 14 12 18 18 H 1.48495 * 109.47284 * 210.00453 * 16 14 12 19 19 H 1.48507 * 109.46885 * 330.00221 * 16 14 12 20 20 C 1.46507 * 119.99758 * 179.97438 * 10 8 7 21 21 C 1.52999 * 109.46683 * 90.00300 * 20 10 8 22 22 C 1.53003 * 109.46989 * 179.97438 * 21 20 10 23 23 C 1.53002 * 109.47204 * 174.99982 * 22 21 20 24 24 C 1.53002 * 109.47029 * 294.99720 * 22 21 20 25 25 C 1.34620 * 120.12563 * 0.27285 * 6 4 3 26 26 O 1.21948 * 119.52556 * 179.97438 * 25 6 4 27 27 N 1.31763 * 120.07857 * 179.70321 * 2 1 3 28 28 H 1.08996 * 109.47654 * 180.28778 * 1 2 3 29 29 H 1.09002 * 109.47216 * 300.29140 * 1 2 3 30 30 H 1.09009 * 109.46826 * 60.28866 * 1 2 3 31 31 H 1.07998 * 120.46046 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.46953 * 269.72142 * 5 4 3 33 33 H 1.09000 * 109.47318 * 29.71739 * 5 4 3 34 34 H 1.09000 * 109.47161 * 149.72370 * 5 4 3 35 35 H 1.08997 * 109.47013 * 210.00273 * 7 6 4 36 36 H 1.08998 * 109.46911 * 330.00229 * 7 6 4 37 37 H 1.08999 * 109.46714 * 209.99854 * 11 10 8 38 38 H 1.08998 * 109.46726 * 330.00006 * 11 10 8 39 39 H 0.97000 * 120.00390 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.47131 * 210.00057 * 20 10 8 41 41 H 1.09000 * 109.47418 * 330.00300 * 20 10 8 42 42 H 1.09001 * 109.47139 * 299.99753 * 21 20 10 43 43 H 1.09000 * 109.47193 * 59.99863 * 21 20 10 44 44 H 1.08997 * 109.47006 * 54.99802 * 22 21 20 45 45 H 1.09002 * 109.46996 * 59.99658 * 23 22 21 46 46 H 1.08992 * 109.47228 * 179.97438 * 23 22 21 47 47 H 1.09003 * 109.46717 * 300.00237 * 23 22 21 48 48 H 1.08997 * 109.47294 * 299.99906 * 24 22 21 49 49 H 1.09003 * 109.46948 * 60.00179 * 24 22 21 50 50 H 1.09002 * 109.46915 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2079 1.2097 0.0000 4 6 3.5679 1.1858 -0.0051 5 6 4.3533 2.4720 -0.0111 6 7 4.2097 -0.0118 0.0010 7 6 5.6740 -0.0565 0.0022 8 6 6.1751 -0.0652 1.4234 9 8 5.3867 -0.0363 2.3446 10 7 7.4994 -0.1040 1.6708 11 6 8.4518 -0.1372 0.5581 12 6 8.8210 1.2715 0.1707 13 1 8.3897 2.1080 0.7006 14 6 9.7102 1.4925 -0.8596 15 7 10.2357 0.4740 -1.5046 16 14 10.1684 3.2387 -1.3394 17 1 11.3526 3.6729 -0.5555 18 1 10.4896 3.2858 -2.7885 19 1 9.0272 4.1457 -1.0557 20 6 7.9866 -0.1119 3.0525 21 6 8.1126 -1.5565 3.5405 22 6 8.6219 -1.5648 4.9832 23 6 8.6296 -3.0001 5.5131 24 6 10.0424 -0.9978 5.0258 25 6 3.5025 -1.1573 0.0064 26 8 4.0898 -2.2260 0.0114 27 7 2.1674 -1.1402 0.0059 28 1 -0.3634 -1.0276 0.0052 29 1 -0.3634 0.5184 0.8874 30 1 -0.3633 0.5094 -0.8927 31 1 1.6769 2.1501 0.0004 32 1 4.5430 2.7770 -1.0402 33 1 3.7829 3.2484 0.4986 34 1 5.3020 2.3207 0.5038 35 1 6.0103 -0.9596 -0.5071 36 1 6.0647 0.8195 -0.5155 37 1 9.3482 -0.6770 0.8632 38 1 7.9967 -0.6411 -0.2946 39 1 10.8610 0.6295 -2.2297 40 1 8.9618 0.3729 3.0966 41 1 7.2840 0.4266 3.6885 42 1 7.1373 -2.0413 3.4963 43 1 8.8151 -2.0949 2.9044 44 1 7.9674 -0.9521 5.6031 45 1 9.2841 -3.6127 4.8931 46 1 8.9929 -3.0060 6.5407 47 1 7.6177 -3.4040 5.4827 48 1 10.6969 -1.6105 4.4059 49 1 10.0369 0.0247 4.6483 50 1 10.4051 -1.0033 6.0537 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433671109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:57 Heat of formation + Delta-G solvation = -66.476978 kcal Electronic energy + Delta-G solvation = -30310.563071 eV Core-core repulsion = 26337.059773 eV Total energy + Delta-G solvation = -3973.503298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.03428 -40.86850 -38.55609 -38.09055 -37.06094 -36.51052 -34.53913 -33.35043 -31.87983 -30.87018 -29.62556 -28.83878 -28.04440 -27.66448 -25.05736 -24.59492 -24.09994 -22.81516 -20.97024 -20.45732 -19.55635 -18.72402 -18.59601 -18.21947 -17.29394 -17.08927 -16.78753 -16.53883 -16.11471 -15.98396 -15.14247 -15.01932 -14.96301 -14.64499 -14.57162 -14.38455 -14.35754 -14.12268 -14.09078 -13.81404 -13.53234 -13.44700 -13.20888 -13.10071 -12.97010 -12.95384 -12.74007 -12.63340 -12.47168 -12.28267 -12.14857 -12.01072 -11.90463 -11.80012 -11.68524 -11.61117 -11.47835 -10.93821 -10.71557 -10.61037 -9.60474 -9.52115 -8.21698 -6.38977 -0.37999 0.62064 1.20044 1.42458 1.44998 1.49052 1.56829 2.12488 2.41825 2.69173 3.09225 3.15053 3.22438 3.44190 3.58053 3.74897 3.84410 3.90371 4.00628 4.09814 4.23759 4.25084 4.36961 4.46270 4.49977 4.56463 4.59973 4.63936 4.68648 4.76717 4.77956 4.84698 4.85957 4.88701 4.94070 4.99025 5.05214 5.07851 5.11810 5.18477 5.24830 5.41294 5.42924 5.46068 5.51267 5.59502 5.72531 5.98097 6.37756 6.68624 6.73355 7.04248 7.06440 7.34738 8.84602 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007805 B = 0.004631 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3586.714979 B = 6044.912011 C = 8656.404182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.263 3.737 3 C -0.282 4.282 4 C 0.209 3.791 5 C -0.132 4.132 6 N -0.499 5.499 7 C 0.082 3.918 8 C 0.507 3.493 9 O -0.585 6.585 10 N -0.588 5.588 11 C 0.247 3.753 12 C -0.546 4.546 13 H 0.066 0.934 14 C 0.024 3.976 15 N -0.921 5.921 16 Si 0.960 3.040 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.256 1.256 20 C 0.121 3.879 21 C -0.120 4.120 22 C -0.088 4.088 23 C -0.143 4.143 24 C -0.145 4.145 25 C 0.623 3.377 26 O -0.600 6.600 27 N -0.600 5.600 28 H 0.072 0.928 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.210 0.790 32 H 0.122 0.878 33 H 0.134 0.866 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.150 0.850 37 H 0.023 0.977 38 H 0.022 0.978 39 H 0.268 0.732 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.036 0.964 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.052 0.948 46 H 0.074 0.926 47 H 0.045 0.955 48 H 0.050 0.950 49 H 0.054 0.946 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.922 8.125 5.165 15.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 C -0.306 4.306 4 C 0.091 3.909 5 C -0.188 4.188 6 N -0.212 5.212 7 C -0.044 4.044 8 C 0.294 3.706 9 O -0.468 6.468 10 N -0.318 5.318 11 C 0.126 3.874 12 C -0.585 4.585 13 H 0.084 0.916 14 C -0.177 4.177 15 N -0.560 5.560 16 Si 0.785 3.215 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.180 1.180 20 C -0.001 4.001 21 C -0.159 4.159 22 C -0.107 4.107 23 C -0.200 4.200 24 C -0.203 4.203 25 C 0.327 3.673 26 O -0.480 6.480 27 N -0.338 5.338 28 H 0.091 0.909 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.227 0.773 32 H 0.140 0.860 33 H 0.153 0.847 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.168 0.832 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.073 0.927 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.923 6.450 5.495 14.627 hybrid contribution 1.360 0.640 -0.584 1.612 sum -10.563 7.089 4.911 13.636 Atomic orbital electron populations 1.21126 0.83921 1.05188 1.06408 1.23106 1.00015 0.87655 0.78578 1.21759 0.90857 1.02015 1.16007 1.22023 0.94816 0.87538 0.86496 1.21393 0.99934 0.91112 1.06396 1.46058 1.08581 1.08099 1.58451 1.21789 0.78234 1.07885 0.96477 1.20560 0.82953 0.76316 0.90777 1.90612 1.55909 1.53480 1.46759 1.48203 1.05243 1.69492 1.08824 1.19218 0.87485 0.97304 0.83353 1.21601 1.27128 0.92274 1.17465 0.91561 1.25717 0.95280 1.01050 0.95697 1.70042 1.30488 1.32502 1.22933 0.85516 0.79076 0.79774 0.77148 1.20451 1.21151 1.18002 1.21527 1.00113 0.97227 0.81269 1.21910 0.99910 0.96414 0.97636 1.21025 0.97768 0.97960 0.93970 1.21806 1.01368 0.95243 1.01604 1.21872 0.95141 1.00820 1.02431 1.18420 0.86214 0.83344 0.79367 1.90894 1.70173 1.29848 1.57048 1.69756 1.04357 1.30881 1.28794 0.90939 0.86299 0.85730 0.77292 0.85960 0.84744 0.92024 0.87566 0.83229 0.95903 0.96024 0.92289 0.89327 0.91239 0.94561 0.92724 0.90914 0.92873 0.90715 0.93599 0.93072 0.92720 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.19 71.24 0.73 -0.70 16 2 C 0.26 6.52 6.84 42.95 0.29 6.81 16 3 C -0.28 -5.62 9.44 22.13 0.21 -5.41 16 4 C 0.21 5.52 6.68 41.42 0.28 5.80 16 5 C -0.13 -2.53 9.14 71.24 0.65 -1.88 16 6 N -0.50 -18.64 2.08 -646.73 -1.34 -19.98 16 7 C 0.08 3.28 3.75 85.63 0.32 3.60 16 8 C 0.51 22.08 7.28 87.66 0.64 22.72 16 9 O -0.59 -27.76 16.01 -3.05 -0.05 -27.81 16 10 N -0.59 -25.11 2.46 -826.14 -2.03 -27.14 16 11 C 0.25 11.60 4.97 85.63 0.43 12.02 16 12 C -0.55 -26.13 9.28 25.60 0.24 -25.89 16 13 H 0.07 3.08 7.81 -2.91 -0.02 3.06 16 14 C 0.02 1.15 5.46 84.65 0.46 1.61 16 15 N -0.92 -48.93 13.29 21.45 0.28 -48.65 16 16 Si 0.96 38.21 29.54 68.60 2.03 40.23 16 17 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 18 H -0.29 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 20 C 0.12 4.53 5.16 86.38 0.45 4.97 16 21 C -0.12 -4.18 5.01 30.59 0.15 -4.03 16 22 C -0.09 -2.38 2.92 -10.79 -0.03 -2.41 16 23 C -0.14 -3.43 9.19 71.98 0.66 -2.77 16 24 C -0.15 -3.53 8.95 71.98 0.64 -2.88 16 25 C 0.62 27.72 8.34 179.49 1.50 29.22 16 26 O -0.60 -32.22 16.74 -5.15 -0.09 -32.31 16 27 N -0.60 -22.73 10.39 -313.21 -3.26 -25.99 16 28 H 0.07 1.15 8.11 -2.39 -0.02 1.13 16 29 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.21 1.75 8.06 -2.91 -0.02 1.72 16 32 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.13 1.56 8.09 -2.39 -0.02 1.54 16 34 H 0.06 1.58 6.31 -2.39 -0.02 1.57 16 35 H 0.11 4.70 6.65 -2.39 -0.02 4.68 16 36 H 0.15 5.31 6.44 -2.39 -0.02 5.30 16 37 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 38 H 0.02 1.09 6.44 -2.39 -0.02 1.07 16 39 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 40 H 0.09 3.18 6.49 -2.39 -0.02 3.17 16 41 H 0.07 2.61 7.42 -2.39 -0.02 2.59 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.04 1.15 8.14 -2.39 -0.02 1.14 16 48 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.05 1.38 6.56 -2.39 -0.02 1.36 16 50 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -78.38 408.73 4.08 -74.30 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.92 Total: 26.55 kcal Atomic # 6 Polarization: 33.18 SS G_CDS: 7.61 Total: 40.79 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -6.34 Total: -121.76 kcal Atomic # 8 Polarization: -59.98 SS G_CDS: -0.13 Total: -60.12 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.23 kcal Total: -78.38 4.08 -74.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433671109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.822 kcal (2) G-P(sol) polarization free energy of solvation -78.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds