Wall clock time and date at job start Tue Mar 31 2020 20:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30834 * 125.90003 * 2 1 4 4 N 1.40081 * 108.20381 * 180.25428 * 3 2 1 5 5 C 1.46509 * 126.03602 * 179.73290 * 4 3 2 6 6 C 1.50700 * 109.47095 * 269.97868 * 5 4 3 7 7 H 1.07996 * 120.00503 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99775 * 180.02562 * 6 5 4 9 9 N 1.31524 * 119.99931 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00291 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47046 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47399 * 120.00003 * 10 8 6 13 13 H 1.48505 * 109.47204 * 240.00111 * 10 8 6 14 14 C 1.34947 * 107.92724 * 359.71727 * 4 3 2 15 15 C 1.50698 * 126.12667 * 179.97438 * 14 4 3 16 16 C 1.35310 * 107.74209 * 359.97438 * 14 4 3 17 17 C 1.50709 * 126.03516 * 180.02562 * 16 14 4 18 18 C 1.53002 * 109.47079 * 90.00272 * 17 16 14 19 19 C 1.50701 * 109.46946 * 179.97438 * 18 17 16 20 20 O 1.21276 * 120.00166 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99585 * 179.97438 * 19 18 17 22 22 C 1.46926 * 120.62730 * 180.02562 * 21 19 18 23 23 C 1.53191 * 108.89109 * 126.46248 * 22 21 19 24 24 C 1.53044 * 109.31440 * 54.56430 * 23 22 21 25 25 O 1.42899 * 109.45846 * 178.62729 * 24 23 22 26 26 C 1.53040 * 109.53662 * 298.63203 * 24 23 22 27 27 C 1.46957 * 120.65462 * 359.81587 * 21 19 18 28 28 H 1.09002 * 109.47108 * 270.21664 * 1 2 3 29 29 H 1.09001 * 109.46986 * 30.21554 * 1 2 3 30 30 H 1.09001 * 109.47391 * 150.21389 * 1 2 3 31 31 H 1.08998 * 109.46801 * 29.98255 * 5 4 3 32 32 H 1.08996 * 109.46743 * 149.97804 * 5 4 3 33 33 H 0.96999 * 119.99713 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47435 * 270.02307 * 15 14 4 35 35 H 1.09001 * 109.47248 * 30.02430 * 15 14 4 36 36 H 1.08996 * 109.46846 * 150.02710 * 15 14 4 37 37 H 1.08997 * 109.47157 * 329.99718 * 17 16 14 38 38 H 1.09002 * 109.46799 * 209.99790 * 17 16 14 39 39 H 1.09002 * 109.47153 * 59.99516 * 18 17 16 40 40 H 1.08999 * 109.46626 * 299.99893 * 18 17 16 41 41 H 1.09002 * 109.58861 * 6.60251 * 22 21 19 42 42 H 1.08996 * 109.58519 * 246.32142 * 22 21 19 43 43 H 1.09003 * 109.49294 * 174.51508 * 23 22 21 44 44 H 1.09001 * 109.49969 * 294.57596 * 23 22 21 45 45 H 1.08994 * 109.45986 * 58.65006 * 24 23 22 46 46 H 0.96704 * 113.99705 * 179.97438 * 25 24 23 47 47 H 1.08995 * 109.49643 * 181.31582 * 26 24 23 48 48 H 1.08996 * 109.49892 * 301.41776 * 26 24 23 49 49 H 1.09001 * 109.46843 * 113.75468 * 27 21 19 50 50 H 1.08997 * 109.71602 * 353.46961 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 -0.0059 5 6 4.7899 1.5007 -0.0134 6 6 5.1881 1.7948 -1.4368 7 1 4.6182 1.3783 -2.2541 8 6 6.2801 2.5957 -1.6956 9 7 6.9739 3.1034 -0.7003 10 14 6.7734 2.9610 -3.4599 11 1 5.8374 2.2762 -4.3874 12 1 6.7208 4.4262 -3.6954 13 1 8.1544 2.4703 -3.6995 14 6 3.6142 -0.7154 -0.0031 15 6 4.8349 -1.5990 -0.0080 16 6 2.3271 -1.1330 0.0049 17 6 1.8599 -2.5658 0.0111 18 6 1.7095 -3.0470 1.4556 19 6 1.2417 -4.4795 1.4617 20 8 1.0472 -5.0584 0.4140 21 7 1.0394 -5.1173 2.6317 22 6 0.5840 -6.5140 2.6539 23 6 1.5463 -7.3359 3.5172 24 6 1.6624 -6.6908 4.9001 25 8 2.5346 -7.4728 5.7185 26 6 2.2285 -5.2760 4.7590 27 6 1.2745 -4.4309 3.9097 28 1 -0.3633 0.0039 1.0277 29 1 -0.3633 0.8881 -0.5172 30 1 -0.3634 -0.8919 -0.5105 31 1 4.5588 2.4342 0.4996 32 1 5.6117 0.9992 0.4976 33 1 7.7424 3.6666 -0.8824 34 1 5.1239 -1.8139 -1.0369 35 1 5.6538 -1.0902 0.5006 36 1 4.6101 -2.5321 0.5086 37 1 2.5905 -3.1884 -0.5052 38 1 0.8983 -2.6365 -0.4974 39 1 0.9788 -2.4243 1.9718 40 1 2.6710 -2.9762 1.9640 41 1 0.5737 -6.9112 1.6388 42 1 -0.4196 -6.5644 3.0761 43 1 1.1650 -8.3518 3.6204 44 1 2.5278 -7.3621 3.0438 45 1 0.6765 -6.6429 5.3624 46 1 2.6555 -7.1221 6.6115 47 1 2.3328 -4.8257 5.7461 48 1 3.2037 -5.3210 4.2742 49 1 0.3278 -4.3090 4.4361 50 1 1.7186 -3.4527 3.7255 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001441106030.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:25 Heat of formation + Delta-G solvation = -37.291464 kcal Electronic energy + Delta-G solvation = -29163.172783 eV Core-core repulsion = 25190.935065 eV Total energy + Delta-G solvation = -3972.237719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.72010 -40.33233 -38.40519 -36.06240 -34.44241 -33.48034 -32.49338 -32.09204 -31.49359 -30.13515 -28.97143 -26.97059 -25.88574 -25.16144 -24.05026 -23.31721 -22.20202 -21.07670 -19.19216 -18.81921 -18.65510 -17.87254 -17.16130 -16.71617 -16.11303 -15.89828 -15.45688 -15.05623 -14.81424 -14.52445 -14.37779 -14.27150 -13.93832 -13.57604 -13.29876 -13.10203 -12.92508 -12.72591 -12.58148 -12.47914 -12.29268 -12.19474 -12.03189 -11.92528 -11.79309 -11.71151 -11.61768 -11.34303 -11.26149 -10.96786 -10.90878 -10.82827 -10.72610 -10.36110 -10.26919 -9.85011 -9.71643 -9.60568 -8.97208 -8.66229 -8.18888 -7.48212 -6.27731 -4.34849 2.53789 2.67224 2.79759 3.19227 3.27237 3.32973 3.37463 3.60776 3.71903 4.21119 4.24850 4.28860 4.52932 4.59514 4.71107 4.82494 4.97540 5.06097 5.14377 5.17655 5.22488 5.26585 5.32414 5.33481 5.38291 5.41039 5.53894 5.63076 5.64486 5.75565 5.81199 5.83069 5.93185 5.96765 6.01839 6.05312 6.22093 6.23483 6.36533 6.45043 6.54374 6.85046 7.01919 7.10896 7.14818 7.18446 7.50864 7.65623 7.87238 8.04359 8.06410 8.66145 8.74883 9.31767 10.79931 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.002343 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.374288 B =11949.839644 C =12554.814585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.534 4.534 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.280 1.280 14 C 0.094 3.906 15 C -0.086 4.086 16 C -0.269 4.269 17 C -0.011 4.011 18 C -0.132 4.132 19 C 0.517 3.483 20 O -0.537 6.537 21 N -0.621 5.621 22 C 0.114 3.886 23 C -0.128 4.128 24 C 0.105 3.895 25 O -0.568 6.568 26 C -0.169 4.169 27 C 0.109 3.891 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.267 0.733 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.378 0.622 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.070 0.930 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.551 -18.374 13.592 25.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 N -0.121 5.121 4 N -0.105 5.105 5 C 0.139 3.861 6 C -0.573 4.573 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.038 4.038 15 C -0.144 4.144 16 C -0.281 4.281 17 C -0.050 4.050 18 C -0.172 4.172 19 C 0.307 3.693 20 O -0.414 6.414 21 N -0.356 5.356 22 C -0.009 4.009 23 C -0.166 4.166 24 C 0.047 3.953 25 O -0.373 6.373 26 C -0.208 4.208 27 C -0.014 4.014 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.226 0.774 47 H 0.098 0.902 48 H 0.097 0.903 49 H 0.089 0.911 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.293 -17.505 12.513 24.301 hybrid contribution 0.487 -0.038 -0.199 0.527 sum -10.806 -17.544 12.314 24.004 Atomic orbital electron populations 1.20025 0.88068 1.02441 1.01773 1.21938 0.96101 0.90766 1.02569 1.77272 0.87497 1.22667 1.24666 1.49247 1.05781 1.04204 1.51225 1.19657 0.77973 0.89530 0.98938 1.21343 1.12936 1.31635 0.91346 0.91752 1.24932 0.95710 0.95014 0.98172 1.69931 1.18925 1.33072 1.31104 0.86305 0.78397 0.78298 0.83730 1.19554 1.20616 1.20634 1.20770 0.96113 0.85674 1.01208 1.20348 0.93761 0.97109 1.03204 1.19342 0.91344 0.95064 1.22349 1.19403 1.01628 0.90910 0.93047 1.21781 1.02815 0.91245 1.01380 1.21081 0.76233 0.89343 0.82646 1.90685 1.51234 1.68356 1.31096 1.48229 1.68086 1.13072 1.06202 1.21515 0.96495 0.80934 1.01969 1.21890 1.01416 0.99643 0.93680 1.21780 0.92309 0.89596 0.91655 1.86537 1.69236 1.53644 1.27914 1.22677 1.00722 0.96323 1.01077 1.21686 0.99296 0.96485 0.83960 0.91641 0.91572 0.91234 0.93082 0.93115 0.92316 0.90429 0.90941 0.91146 0.91410 0.91251 0.88990 0.89096 0.88266 0.91480 0.90033 0.90647 0.92551 0.77445 0.90246 0.90327 0.91134 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.26 36.01 0.37 -0.54 16 2 C 0.05 0.95 7.22 -82.41 -0.59 0.36 16 3 N -0.30 -6.79 12.58 33.67 0.42 -6.37 16 4 N -0.33 -7.54 3.60 -58.31 -0.21 -7.75 16 5 C 0.26 6.56 6.00 -5.19 -0.03 6.53 16 6 C -0.53 -14.77 9.39 -34.44 -0.32 -15.09 16 7 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 10 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 C 0.09 1.85 6.93 -82.27 -0.57 1.28 16 15 C -0.09 -1.41 9.72 36.00 0.35 -1.06 16 16 C -0.27 -4.75 5.35 -105.05 -0.56 -5.32 16 17 C -0.01 -0.16 4.41 -27.88 -0.12 -0.28 16 18 C -0.13 -1.50 4.03 -27.88 -0.11 -1.61 16 19 C 0.52 6.19 7.70 -10.98 -0.08 6.10 16 20 O -0.54 -8.33 15.39 5.56 0.09 -8.24 16 21 N -0.62 -5.64 2.98 -172.77 -0.51 -6.16 16 22 C 0.11 0.92 6.43 -3.71 -0.02 0.90 16 23 C -0.13 -0.96 5.73 -26.61 -0.15 -1.11 16 24 C 0.11 0.67 3.43 -26.69 -0.09 0.58 16 25 O -0.57 -4.07 13.32 -35.23 -0.47 -4.54 16 26 C -0.17 -0.99 5.70 -26.63 -0.15 -1.14 16 27 C 0.11 0.70 6.33 -3.71 -0.02 0.67 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.86 7.25 -51.93 -0.38 0.48 16 31 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.05 1.28 7.05 -51.93 -0.37 0.91 16 33 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.21 7.08 -51.93 -0.37 0.84 16 36 H 0.07 0.93 7.77 -51.93 -0.40 0.53 16 37 H 0.07 1.02 7.73 -51.93 -0.40 0.61 16 38 H 0.07 1.00 7.20 -51.93 -0.37 0.63 16 39 H 0.09 0.94 7.95 -51.93 -0.41 0.52 16 40 H 0.09 0.96 7.69 -51.93 -0.40 0.56 16 41 H 0.10 0.97 7.01 -51.93 -0.36 0.60 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.38 1.14 9.08 45.56 0.41 1.55 16 47 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.09 0.59 5.95 -51.93 -0.31 0.28 16 LS Contribution 403.55 15.07 6.08 6.08 Total: -1.00 -33.96 403.55 -8.67 -42.62 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -7.56 Total: 0.56 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -2.22 Total: -8.05 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.44 Total: -44.65 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.38 Total: -12.78 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.96 -8.67 -42.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001441106030.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.333 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds