Wall clock time and date at job start Tue Mar 31 2020 20:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30834 * 125.90003 * 2 1 4 4 N 1.40081 * 108.20381 * 180.25428 * 3 2 1 5 5 C 1.46509 * 126.03602 * 179.73290 * 4 3 2 6 6 C 1.50700 * 109.47095 * 269.97868 * 5 4 3 7 7 H 1.07996 * 120.00503 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99775 * 180.02562 * 6 5 4 9 9 N 1.31524 * 119.99931 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00291 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47046 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47399 * 120.00003 * 10 8 6 13 13 H 1.48505 * 109.47204 * 240.00111 * 10 8 6 14 14 C 1.34947 * 107.92724 * 359.71727 * 4 3 2 15 15 C 1.50698 * 126.12667 * 179.97438 * 14 4 3 16 16 C 1.35310 * 107.74209 * 359.97438 * 14 4 3 17 17 C 1.50709 * 126.03516 * 180.02562 * 16 14 4 18 18 C 1.53002 * 109.47079 * 90.00272 * 17 16 14 19 19 C 1.50701 * 109.46946 * 179.97438 * 18 17 16 20 20 O 1.21276 * 120.00166 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99585 * 179.97438 * 19 18 17 22 22 C 1.46926 * 120.62730 * 180.02562 * 21 19 18 23 23 C 1.53191 * 108.89109 * 126.46248 * 22 21 19 24 24 C 1.53044 * 109.31440 * 54.56430 * 23 22 21 25 25 O 1.42899 * 109.45846 * 178.62729 * 24 23 22 26 26 C 1.53040 * 109.53662 * 298.63203 * 24 23 22 27 27 C 1.46957 * 120.65462 * 359.81587 * 21 19 18 28 28 H 1.09002 * 109.47108 * 270.21664 * 1 2 3 29 29 H 1.09001 * 109.46986 * 30.21554 * 1 2 3 30 30 H 1.09001 * 109.47391 * 150.21389 * 1 2 3 31 31 H 1.08998 * 109.46801 * 29.98255 * 5 4 3 32 32 H 1.08996 * 109.46743 * 149.97804 * 5 4 3 33 33 H 0.96999 * 119.99713 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47435 * 270.02307 * 15 14 4 35 35 H 1.09001 * 109.47248 * 30.02430 * 15 14 4 36 36 H 1.08996 * 109.46846 * 150.02710 * 15 14 4 37 37 H 1.08997 * 109.47157 * 329.99718 * 17 16 14 38 38 H 1.09002 * 109.46799 * 209.99790 * 17 16 14 39 39 H 1.09002 * 109.47153 * 59.99516 * 18 17 16 40 40 H 1.08999 * 109.46626 * 299.99893 * 18 17 16 41 41 H 1.09002 * 109.58861 * 6.60251 * 22 21 19 42 42 H 1.08996 * 109.58519 * 246.32142 * 22 21 19 43 43 H 1.09003 * 109.49294 * 174.51508 * 23 22 21 44 44 H 1.09001 * 109.49969 * 294.57596 * 23 22 21 45 45 H 1.08994 * 109.45986 * 58.65006 * 24 23 22 46 46 H 0.96704 * 113.99705 * 179.97438 * 25 24 23 47 47 H 1.08995 * 109.49643 * 181.31582 * 26 24 23 48 48 H 1.08996 * 109.49892 * 301.41776 * 26 24 23 49 49 H 1.09001 * 109.46843 * 113.75468 * 27 21 19 50 50 H 1.08997 * 109.71602 * 353.46961 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 -0.0059 5 6 4.7899 1.5007 -0.0134 6 6 5.1881 1.7948 -1.4368 7 1 4.6182 1.3783 -2.2541 8 6 6.2801 2.5957 -1.6956 9 7 6.9739 3.1034 -0.7003 10 14 6.7734 2.9610 -3.4599 11 1 5.8374 2.2762 -4.3874 12 1 6.7208 4.4262 -3.6954 13 1 8.1544 2.4703 -3.6995 14 6 3.6142 -0.7154 -0.0031 15 6 4.8349 -1.5990 -0.0080 16 6 2.3271 -1.1330 0.0049 17 6 1.8599 -2.5658 0.0111 18 6 1.7095 -3.0470 1.4556 19 6 1.2417 -4.4795 1.4617 20 8 1.0472 -5.0584 0.4140 21 7 1.0394 -5.1173 2.6317 22 6 0.5840 -6.5140 2.6539 23 6 1.5463 -7.3359 3.5172 24 6 1.6624 -6.6908 4.9001 25 8 2.5346 -7.4728 5.7185 26 6 2.2285 -5.2760 4.7590 27 6 1.2745 -4.4309 3.9097 28 1 -0.3633 0.0039 1.0277 29 1 -0.3633 0.8881 -0.5172 30 1 -0.3634 -0.8919 -0.5105 31 1 4.5588 2.4342 0.4996 32 1 5.6117 0.9992 0.4976 33 1 7.7424 3.6666 -0.8824 34 1 5.1239 -1.8139 -1.0369 35 1 5.6538 -1.0902 0.5006 36 1 4.6101 -2.5321 0.5086 37 1 2.5905 -3.1884 -0.5052 38 1 0.8983 -2.6365 -0.4974 39 1 0.9788 -2.4243 1.9718 40 1 2.6710 -2.9762 1.9640 41 1 0.5737 -6.9112 1.6388 42 1 -0.4196 -6.5644 3.0761 43 1 1.1650 -8.3518 3.6204 44 1 2.5278 -7.3621 3.0438 45 1 0.6765 -6.6429 5.3624 46 1 2.6555 -7.1221 6.6115 47 1 2.3328 -4.8257 5.7461 48 1 3.2037 -5.3210 4.2742 49 1 0.3278 -4.3090 4.4361 50 1 1.7186 -3.4527 3.7255 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001441106030.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:24 Heat of formation + Delta-G solvation = -60.294987 kcal Electronic energy + Delta-G solvation = -29164.170291 eV Core-core repulsion = 25190.935065 eV Total energy + Delta-G solvation = -3973.235226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.16661 -41.19747 -39.08729 -36.71583 -36.10280 -34.92374 -34.20070 -32.89090 -32.07603 -31.48304 -30.47259 -28.22887 -27.61959 -26.10511 -25.01632 -24.32808 -23.60916 -21.75849 -20.32113 -20.18655 -19.85977 -18.83068 -18.47026 -17.94191 -17.26639 -16.89140 -16.69104 -16.25818 -15.92548 -15.57842 -15.40583 -15.12854 -14.90908 -14.62258 -14.46040 -14.43023 -14.09178 -14.02110 -13.81854 -13.60408 -13.38004 -13.31128 -13.22573 -13.06268 -12.84937 -12.75051 -12.71974 -12.63755 -12.59274 -12.47066 -12.26794 -12.21322 -11.87097 -11.69773 -11.44363 -11.15442 -10.90092 -10.76110 -10.67375 -9.83729 -9.69462 -9.02749 -8.35991 -6.53461 1.17237 1.33691 1.35827 1.48210 1.65079 1.84923 1.94805 2.10489 2.32246 2.93480 3.28031 3.54289 3.74075 3.85020 3.91877 3.96814 4.05059 4.16891 4.20812 4.23890 4.31538 4.33573 4.44746 4.56617 4.63660 4.66369 4.70632 4.72804 4.77171 4.80137 4.85165 4.86390 4.87594 4.90468 4.95859 5.00742 5.03473 5.09748 5.14377 5.30023 5.31594 5.44249 5.49806 5.55315 5.57800 5.79603 6.05910 6.31391 6.38213 6.61860 6.91165 7.11844 7.18016 7.19885 8.70195 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.002343 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.374288 B =11949.839644 C =12554.814585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 N -0.349 5.349 4 N -0.355 5.355 5 C 0.275 3.725 6 C -0.552 4.552 7 H 0.046 0.954 8 C 0.022 3.978 9 N -0.918 5.918 10 Si 0.970 3.030 11 H -0.275 1.275 12 H -0.273 1.273 13 H -0.266 1.266 14 C 0.078 3.922 15 C -0.083 4.083 16 C -0.257 4.257 17 C -0.004 4.004 18 C -0.123 4.123 19 C 0.517 3.483 20 O -0.581 6.581 21 N -0.615 5.615 22 C 0.114 3.886 23 C -0.126 4.126 24 C 0.106 3.894 25 O -0.588 6.588 26 C -0.164 4.164 27 C 0.103 3.897 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.020 0.980 32 H 0.047 0.953 33 H 0.274 0.726 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.051 0.949 45 H 0.076 0.924 46 H 0.396 0.604 47 H 0.104 0.896 48 H 0.058 0.942 49 H 0.095 0.905 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.773 -19.578 14.728 27.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 N -0.173 5.173 4 N -0.135 5.135 5 C 0.156 3.844 6 C -0.590 4.590 7 H 0.064 0.936 8 C -0.179 4.179 9 N -0.556 5.556 10 Si 0.794 3.206 11 H -0.200 1.200 12 H -0.199 1.199 13 H -0.191 1.191 14 C -0.051 4.051 15 C -0.141 4.141 16 C -0.268 4.268 17 C -0.043 4.043 18 C -0.163 4.163 19 C 0.307 3.693 20 O -0.461 6.461 21 N -0.349 5.349 22 C -0.008 4.008 23 C -0.164 4.164 24 C 0.048 3.952 25 O -0.397 6.397 26 C -0.202 4.202 27 C -0.019 4.019 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.070 0.930 45 H 0.094 0.906 46 H 0.246 0.754 47 H 0.122 0.878 48 H 0.077 0.923 49 H 0.113 0.887 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.517 -18.726 13.713 26.370 hybrid contribution 0.783 0.249 -0.466 0.945 sum -11.734 -18.477 13.247 25.585 Atomic orbital electron populations 1.20215 0.84641 1.03415 1.03852 1.22779 0.98141 0.90125 0.99913 1.77210 0.87763 1.24994 1.27333 1.49002 1.05365 1.05126 1.54054 1.19127 0.79043 0.88757 0.97473 1.21452 1.13344 1.32350 0.91843 0.93599 1.25735 0.95421 0.94473 1.02265 1.70007 1.19293 1.33308 1.33026 0.85322 0.78404 0.78257 0.78588 1.19989 1.19855 1.19072 1.21425 0.98140 0.84692 1.00870 1.20427 0.92368 0.97851 1.03414 1.19688 0.90345 0.96440 1.20372 1.19362 1.01265 0.88428 0.95252 1.21655 1.03982 0.91267 0.99361 1.21095 0.75980 0.89427 0.82840 1.90674 1.53457 1.69232 1.32752 1.48293 1.66718 1.13400 1.06455 1.21556 0.97762 0.80382 1.01146 1.21842 0.99964 1.00137 0.94469 1.21790 0.93187 0.89400 0.90846 1.86494 1.69516 1.54359 1.29325 1.22637 0.99414 0.96180 1.02010 1.21947 1.00733 0.96412 0.82765 0.88887 0.91724 0.89104 0.96200 0.93509 0.91720 0.90667 0.91766 0.87758 0.92135 0.91050 0.87108 0.88098 0.90382 0.89229 0.89456 0.92972 0.90585 0.75415 0.87803 0.92336 0.88706 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.63 10.26 71.24 0.73 -0.90 16 2 C 0.06 2.04 7.22 43.10 0.31 2.35 16 3 N -0.35 -16.30 12.58 -47.39 -0.60 -16.89 16 4 N -0.36 -17.03 3.60 -338.40 -1.22 -18.25 16 5 C 0.28 14.75 6.00 85.63 0.51 15.26 16 6 C -0.55 -31.56 9.39 25.60 0.24 -31.32 16 7 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 8 C 0.02 1.22 5.46 84.65 0.46 1.68 16 9 N -0.92 -52.44 13.29 21.45 0.28 -52.16 16 10 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 14 C 0.08 3.10 6.93 41.40 0.29 3.39 16 15 C -0.08 -2.69 9.72 71.24 0.69 -2.00 16 16 C -0.26 -8.84 5.35 -20.14 -0.11 -8.94 16 17 C 0.00 -0.11 4.41 29.85 0.13 0.02 16 18 C -0.12 -2.49 4.03 29.85 0.12 -2.37 16 19 C 0.52 11.48 7.70 87.66 0.67 12.16 16 20 O -0.58 -17.66 15.39 -3.02 -0.05 -17.70 16 21 N -0.62 -9.85 2.98 -818.91 -2.44 -12.29 16 22 C 0.11 1.67 6.43 86.36 0.56 2.22 16 23 C -0.13 -1.72 5.73 30.67 0.18 -1.55 16 24 C 0.11 1.08 3.43 30.62 0.11 1.18 16 25 O -0.59 -7.19 13.32 -148.98 -1.98 -9.18 16 26 C -0.16 -1.46 5.70 30.66 0.17 -1.28 16 27 C 0.10 0.98 6.33 86.34 0.55 1.53 16 28 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 1.97 7.25 -2.39 -0.02 1.96 16 31 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 2.48 7.05 -2.39 -0.02 2.47 16 33 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 34 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 35 H 0.06 2.18 7.08 -2.39 -0.02 2.16 16 36 H 0.10 2.61 7.77 -2.39 -0.02 2.59 16 37 H 0.06 1.74 7.73 -2.39 -0.02 1.72 16 38 H 0.07 1.93 7.20 -2.39 -0.02 1.91 16 39 H 0.11 1.86 7.95 -2.39 -0.02 1.84 16 40 H 0.10 1.87 7.69 -2.39 -0.02 1.85 16 41 H 0.08 1.50 7.01 -2.39 -0.02 1.49 16 42 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.40 1.40 9.08 -74.05 -0.67 0.72 16 47 H 0.10 0.44 8.14 -2.39 -0.02 0.43 16 48 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.10 0.89 5.95 -2.39 -0.01 0.87 16 Total: -1.00 -76.46 403.55 1.91 -74.55 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.27 Total: 14.59 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 5.61 Total: -8.55 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -3.97 Total: -99.59 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -2.03 Total: -26.88 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -76.46 1.91 -74.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001441106030.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.256 kcal (2) G-P(sol) polarization free energy of solvation -76.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds