Wall clock time and date at job start Tue Mar 31 2020 18:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35456 * 125.56065 * 2 1 4 4 C 1.39839 * 107.85905 * 179.76389 * 3 2 1 5 5 C 1.37873 * 107.08698 * 0.41874 * 4 3 2 6 6 C 1.46683 * 126.22936 * 179.85179 * 5 4 3 7 7 O 1.21689 * 119.99556 * 151.55989 * 6 5 4 8 8 N 1.34774 * 120.00014 * 331.55435 * 6 5 4 9 9 C 1.46927 * 120.63118 * 351.67731 * 8 6 5 10 10 C 1.53193 * 108.77194 * 233.58669 * 9 8 6 11 11 C 1.53043 * 109.34038 * 305.37542 * 10 9 8 12 12 C 1.53041 * 109.53528 * 61.32087 * 11 10 9 13 13 H 1.09004 * 109.50033 * 58.64845 * 12 11 10 14 14 N 1.46498 * 109.50030 * 178.71626 * 12 11 10 15 15 C 1.36934 * 120.00032 * 59.93207 * 14 12 11 16 16 H 1.08004 * 120.00101 * 35.46818 * 15 14 12 17 17 C 1.38817 * 120.00469 * 215.46423 * 15 14 12 18 18 N 1.31622 * 119.99307 * 22.20531 * 17 15 14 19 19 Si 1.86791 * 120.00312 * 202.20651 * 17 15 14 20 20 H 1.48506 * 109.47235 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47267 * 120.00039 * 19 17 15 22 22 H 1.48502 * 109.47219 * 240.00231 * 19 17 15 23 23 C 1.46503 * 120.00084 * 239.93542 * 14 12 11 24 24 C 1.52993 * 109.47025 * 273.16159 * 23 14 12 25 25 O 1.42898 * 109.47250 * 65.00200 * 24 23 14 26 26 C 1.46929 * 120.63036 * 171.65160 * 8 6 5 27 27 N 1.35534 * 125.56729 * 180.02562 * 2 1 3 28 28 C 1.46509 * 125.67389 * 0.02562 * 27 2 1 29 29 H 1.09006 * 109.47328 * 269.96932 * 1 2 3 30 30 H 1.09004 * 109.47484 * 29.97292 * 1 2 3 31 31 H 1.09000 * 109.46952 * 149.97409 * 1 2 3 32 32 H 1.07993 * 126.06932 * 0.02562 * 3 2 1 33 33 H 1.07999 * 126.45698 * 180.26714 * 4 3 2 34 34 H 1.09003 * 109.58548 * 353.36727 * 9 8 6 35 35 H 1.08991 * 109.58684 * 113.65626 * 9 8 6 36 36 H 1.08994 * 109.50182 * 65.31843 * 10 9 8 37 37 H 1.09004 * 109.49560 * 185.38319 * 10 9 8 38 38 H 1.08992 * 109.43482 * 301.32034 * 11 10 9 39 39 H 1.08991 * 109.48872 * 181.35463 * 11 10 9 40 40 H 0.97004 * 119.99596 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.47129 * 33.16476 * 23 14 12 42 42 H 1.08997 * 109.46983 * 153.15837 * 23 14 12 43 43 H 1.09008 * 109.47097 * 185.00350 * 24 23 14 44 44 H 1.08998 * 109.47484 * 304.99319 * 24 23 14 45 45 H 0.96705 * 113.99865 * 180.02562 * 25 24 23 46 46 H 1.08999 * 109.58343 * 6.62812 * 26 8 6 47 47 H 1.08992 * 109.70435 * 246.27323 * 26 8 6 48 48 H 1.08999 * 109.46824 * 264.64267 * 28 27 2 49 49 H 1.08995 * 109.47381 * 24.64429 * 28 27 2 50 50 H 1.09001 * 109.46591 * 144.64024 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2947 1.1019 0.0000 4 6 3.6269 0.6768 0.0055 5 6 3.6121 -0.7019 -0.0009 6 6 4.7860 -1.5814 -0.0014 7 8 4.7157 -2.6901 0.4952 8 7 5.9423 -1.1617 -0.5520 9 6 5.9965 0.0936 -1.3137 10 6 6.6000 -0.1921 -2.6925 11 6 7.9555 -0.8813 -2.5196 12 6 7.7632 -2.2130 -1.7904 13 1 7.0830 -2.8454 -2.3611 14 7 9.0569 -2.8863 -1.6524 15 6 10.0758 -2.2781 -0.9689 16 1 9.8580 -1.6711 -0.1025 17 6 11.3886 -2.4419 -1.3893 18 7 11.6428 -2.7856 -2.6341 19 14 12.7942 -2.1744 -0.1885 20 1 12.2461 -1.7964 1.1390 21 1 13.5816 -3.4270 -0.0611 22 1 13.6724 -1.0864 -0.6888 23 6 9.2608 -4.2101 -2.2459 24 6 8.8059 -5.2869 -1.2588 25 8 7.3961 -5.1785 -1.0518 26 6 7.1729 -1.9503 -0.4014 27 7 2.2953 -1.1025 -0.0005 28 6 1.8242 -2.4897 -0.0016 29 1 -0.3634 -0.0006 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 1.9544 2.1268 0.0004 33 1 4.5024 1.3091 0.0110 34 1 4.9893 0.4933 -1.4315 35 1 6.6168 0.8162 -0.7836 36 1 5.9306 -0.8429 -3.2549 37 1 6.7343 0.7454 -3.2322 38 1 8.6165 -0.2402 -1.9364 39 1 8.3980 -1.0640 -3.4987 40 1 12.5601 -2.9004 -2.9279 41 1 8.6793 -4.2901 -3.1643 42 1 10.3181 -4.3479 -2.4722 43 1 9.0391 -6.2721 -1.6629 44 1 9.3240 -5.1519 -0.3094 45 1 7.0377 -5.8316 -0.4353 46 1 6.9418 -2.8991 0.0828 47 1 7.8921 -1.3974 0.2027 48 1 1.7978 -2.8653 1.0213 49 1 0.8231 -2.5331 -0.4305 50 1 2.5012 -3.1028 -0.5966 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479651388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:09 Heat of formation + Delta-G solvation = -5.645407 kcal Electronic energy + Delta-G solvation = -30802.987220 eV Core-core repulsion = 26832.121777 eV Total energy + Delta-G solvation = -3970.865443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.52506 -39.29319 -37.26718 -36.16102 -34.68429 -33.08010 -32.20374 -31.63903 -31.20262 -29.66299 -27.48327 -26.72393 -26.44153 -24.68944 -24.11882 -22.11585 -21.56743 -20.61279 -20.02972 -19.31721 -18.71378 -16.86558 -16.67600 -16.24387 -16.08289 -15.67218 -15.18148 -14.79578 -14.49801 -14.29881 -14.03122 -13.69120 -13.61010 -13.36816 -13.32829 -13.12672 -12.91081 -12.86851 -12.78545 -12.43523 -12.27905 -12.11318 -12.06160 -11.96925 -11.68133 -11.35385 -11.12826 -10.83737 -10.65821 -10.39977 -10.31344 -10.16455 -9.94543 -9.84358 -9.57200 -9.47548 -9.07420 -8.70086 -8.52838 -8.21689 -7.92448 -6.56669 -5.81004 -3.34154 1.62682 2.60010 2.71758 3.33678 3.43345 3.45162 3.47676 3.57589 4.47403 4.63410 4.69360 4.80413 4.95260 5.12455 5.16810 5.23279 5.31426 5.32152 5.39376 5.43725 5.47405 5.50404 5.57407 5.63817 5.65275 5.89855 6.00163 6.08067 6.14206 6.15419 6.19892 6.26595 6.35890 6.46874 6.49835 6.62207 6.69179 6.78653 6.85634 6.98543 7.02474 7.08321 7.18819 7.23086 7.32779 7.59645 7.81293 7.83993 8.42952 8.47667 8.52634 9.18516 9.81844 10.41263 11.20153 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018344 B = 0.003284 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.008143 B = 8524.037763 C = 9203.768917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.029 3.971 3 C -0.206 4.206 4 C -0.149 4.149 5 C -0.037 4.037 6 C 0.581 3.419 7 O -0.550 6.550 8 N -0.589 5.589 9 C 0.092 3.908 10 C -0.132 4.132 11 C -0.124 4.124 12 C 0.178 3.822 13 H 0.054 0.946 14 N -0.571 5.571 15 C -0.252 4.252 16 H 0.062 0.938 17 C 0.009 3.991 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.150 3.850 24 C 0.053 3.947 25 O -0.565 6.565 26 C 0.107 3.893 27 N -0.410 5.410 28 C 0.073 3.927 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.254 0.746 41 H 0.027 0.973 42 H 0.109 0.891 43 H 0.021 0.979 44 H 0.040 0.960 45 H 0.357 0.643 46 H 0.093 0.907 47 H 0.065 0.935 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.896 4.446 2.299 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.230 4.230 4 C -0.175 4.175 5 C -0.151 4.151 6 C 0.369 3.631 7 O -0.429 6.429 8 N -0.321 5.321 9 C -0.031 4.031 10 C -0.171 4.171 11 C -0.164 4.164 12 C 0.070 3.930 13 H 0.073 0.927 14 N -0.290 5.290 15 C -0.382 4.382 16 H 0.079 0.921 17 C -0.191 4.191 18 N -0.532 5.532 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.024 3.976 24 C -0.027 4.027 25 O -0.368 6.368 26 C -0.015 4.015 27 N -0.084 5.084 28 C -0.068 4.068 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.167 0.833 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.127 0.873 43 H 0.039 0.961 44 H 0.058 0.942 45 H 0.201 0.799 46 H 0.111 0.889 47 H 0.083 0.917 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.753 3.933 2.028 19.268 hybrid contribution 0.967 -0.347 0.992 1.428 sum -17.786 3.586 3.021 18.394 Atomic orbital electron populations 1.20352 0.88037 1.03191 1.02640 1.20480 0.93593 0.85917 1.08677 1.20587 0.92510 0.97549 1.12349 1.21478 0.97777 0.92086 1.06163 1.20235 0.84165 0.93903 1.16747 1.17014 0.81970 0.85237 0.78848 1.90783 1.84069 1.20534 1.47540 1.47888 1.09089 1.23828 1.51296 1.22261 1.02525 0.85826 0.92451 1.21954 0.98620 1.00725 0.95800 1.21970 0.94446 0.98340 1.01623 1.20500 0.88276 0.92058 0.92208 0.92736 1.43688 1.08031 1.14140 1.63163 1.19041 0.85449 1.28158 1.05514 0.92055 1.25098 0.98078 1.00837 0.95054 1.70000 1.18829 1.50528 1.13830 0.86378 0.82596 0.77437 0.81311 1.20117 1.21547 1.21722 1.21078 1.02402 0.82738 0.91408 1.23179 0.80611 0.98301 1.00586 1.86611 1.23396 1.59142 1.67682 1.22315 0.82541 0.96032 1.00661 1.43738 1.04744 1.06433 1.53455 1.22090 1.00831 0.79720 1.04170 0.90967 0.90019 0.91810 0.84254 0.83345 0.88631 0.91502 0.92418 0.91469 0.91517 0.92082 0.93631 0.95409 0.87332 0.96097 0.94188 0.79913 0.88897 0.91664 0.90324 0.90040 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.07 36.00 0.36 -0.23 16 2 C 0.03 0.32 6.87 -81.95 -0.56 -0.24 16 3 C -0.21 -2.33 10.71 -39.98 -0.43 -2.76 16 4 C -0.15 -1.94 8.43 -39.12 -0.33 -2.27 16 5 C -0.04 -0.56 6.32 -81.98 -0.52 -1.08 16 6 C 0.58 10.49 7.41 -12.85 -0.10 10.40 16 7 O -0.55 -11.41 15.15 5.20 0.08 -11.33 16 8 N -0.59 -10.37 2.97 -174.31 -0.52 -10.89 16 9 C 0.09 1.34 5.11 -3.71 -0.02 1.32 16 10 C -0.13 -2.03 6.08 -26.61 -0.16 -2.20 16 11 C -0.12 -2.45 5.12 -26.69 -0.14 -2.58 16 12 C 0.18 3.82 2.22 -67.81 -0.15 3.67 16 13 H 0.05 1.25 7.75 -51.93 -0.40 0.84 16 14 N -0.57 -13.80 2.36 -165.52 -0.39 -14.19 16 15 C -0.25 -6.55 8.25 -15.06 -0.12 -6.68 16 16 H 0.06 1.61 6.74 -52.48 -0.35 1.26 16 17 C 0.01 0.24 4.92 -17.43 -0.09 0.15 16 18 N -0.89 -24.59 11.42 55.49 0.63 -23.95 16 19 Si 0.89 21.04 29.61 -169.99 -5.03 16.01 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 C 0.15 3.54 5.64 -4.04 -0.02 3.52 16 24 C 0.05 1.08 7.39 37.15 0.27 1.36 16 25 O -0.57 -11.18 12.41 -35.23 -0.44 -11.61 16 26 C 0.11 2.19 5.78 -3.71 -0.02 2.17 16 27 N -0.41 -5.37 3.16 -115.61 -0.37 -5.74 16 28 C 0.07 0.80 10.15 59.85 0.61 1.40 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.39 6.92 -51.93 -0.36 0.03 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.15 1.72 6.43 -52.49 -0.34 1.38 16 34 H 0.10 1.23 4.35 -51.93 -0.23 1.01 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.40 7.70 -51.93 -0.40 1.00 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.03 0.65 7.99 -51.93 -0.41 0.24 16 42 H 0.11 2.81 5.43 -51.93 -0.28 2.53 16 43 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.36 5.51 9.12 45.56 0.42 5.92 16 46 H 0.09 2.10 6.44 -51.93 -0.33 1.77 16 47 H 0.07 1.40 6.78 -51.93 -0.35 1.04 16 48 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.08 0.61 6.81 -51.93 -0.35 0.26 16 50 H 0.09 1.13 7.45 -51.93 -0.39 0.74 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -31.69 388.41 -8.74 -40.43 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.15 Total: 9.47 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -1.41 Total: 5.96 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.64 Total: -54.78 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.36 Total: -22.94 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.69 -8.74 -40.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479651388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.782 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds