Wall clock time and date at job start Tue Mar 31 2020 18:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35456 * 125.56065 * 2 1 4 4 C 1.39839 * 107.85905 * 179.76389 * 3 2 1 5 5 C 1.37873 * 107.08698 * 0.41874 * 4 3 2 6 6 C 1.46683 * 126.22936 * 179.85179 * 5 4 3 7 7 O 1.21689 * 119.99556 * 151.55989 * 6 5 4 8 8 N 1.34774 * 120.00014 * 331.55435 * 6 5 4 9 9 C 1.46927 * 120.63118 * 351.67731 * 8 6 5 10 10 C 1.53193 * 108.77194 * 233.58669 * 9 8 6 11 11 C 1.53043 * 109.34038 * 305.37542 * 10 9 8 12 12 C 1.53041 * 109.53528 * 61.32087 * 11 10 9 13 13 H 1.09004 * 109.50033 * 58.64845 * 12 11 10 14 14 N 1.46498 * 109.50030 * 178.71626 * 12 11 10 15 15 C 1.36934 * 120.00032 * 59.93207 * 14 12 11 16 16 H 1.08004 * 120.00101 * 35.46818 * 15 14 12 17 17 C 1.38817 * 120.00469 * 215.46423 * 15 14 12 18 18 N 1.31622 * 119.99307 * 22.20531 * 17 15 14 19 19 Si 1.86791 * 120.00312 * 202.20651 * 17 15 14 20 20 H 1.48506 * 109.47235 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47267 * 120.00039 * 19 17 15 22 22 H 1.48502 * 109.47219 * 240.00231 * 19 17 15 23 23 C 1.46503 * 120.00084 * 239.93542 * 14 12 11 24 24 C 1.52993 * 109.47025 * 273.16159 * 23 14 12 25 25 O 1.42898 * 109.47250 * 65.00200 * 24 23 14 26 26 C 1.46929 * 120.63036 * 171.65160 * 8 6 5 27 27 N 1.35534 * 125.56729 * 180.02562 * 2 1 3 28 28 C 1.46509 * 125.67389 * 0.02562 * 27 2 1 29 29 H 1.09006 * 109.47328 * 269.96932 * 1 2 3 30 30 H 1.09004 * 109.47484 * 29.97292 * 1 2 3 31 31 H 1.09000 * 109.46952 * 149.97409 * 1 2 3 32 32 H 1.07993 * 126.06932 * 0.02562 * 3 2 1 33 33 H 1.07999 * 126.45698 * 180.26714 * 4 3 2 34 34 H 1.09003 * 109.58548 * 353.36727 * 9 8 6 35 35 H 1.08991 * 109.58684 * 113.65626 * 9 8 6 36 36 H 1.08994 * 109.50182 * 65.31843 * 10 9 8 37 37 H 1.09004 * 109.49560 * 185.38319 * 10 9 8 38 38 H 1.08992 * 109.43482 * 301.32034 * 11 10 9 39 39 H 1.08991 * 109.48872 * 181.35463 * 11 10 9 40 40 H 0.97004 * 119.99596 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.47129 * 33.16476 * 23 14 12 42 42 H 1.08997 * 109.46983 * 153.15837 * 23 14 12 43 43 H 1.09008 * 109.47097 * 185.00350 * 24 23 14 44 44 H 1.08998 * 109.47484 * 304.99319 * 24 23 14 45 45 H 0.96705 * 113.99865 * 180.02562 * 25 24 23 46 46 H 1.08999 * 109.58343 * 6.62812 * 26 8 6 47 47 H 1.08992 * 109.70435 * 246.27323 * 26 8 6 48 48 H 1.08999 * 109.46824 * 264.64267 * 28 27 2 49 49 H 1.08995 * 109.47381 * 24.64429 * 28 27 2 50 50 H 1.09001 * 109.46591 * 144.64024 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2947 1.1019 0.0000 4 6 3.6269 0.6768 0.0055 5 6 3.6121 -0.7019 -0.0009 6 6 4.7860 -1.5814 -0.0014 7 8 4.7157 -2.6901 0.4952 8 7 5.9423 -1.1617 -0.5520 9 6 5.9965 0.0936 -1.3137 10 6 6.6000 -0.1921 -2.6925 11 6 7.9555 -0.8813 -2.5196 12 6 7.7632 -2.2130 -1.7904 13 1 7.0830 -2.8454 -2.3611 14 7 9.0569 -2.8863 -1.6524 15 6 10.0758 -2.2781 -0.9689 16 1 9.8580 -1.6711 -0.1025 17 6 11.3886 -2.4419 -1.3893 18 7 11.6428 -2.7856 -2.6341 19 14 12.7942 -2.1744 -0.1885 20 1 12.2461 -1.7964 1.1390 21 1 13.5816 -3.4270 -0.0611 22 1 13.6724 -1.0864 -0.6888 23 6 9.2608 -4.2101 -2.2459 24 6 8.8059 -5.2869 -1.2588 25 8 7.3961 -5.1785 -1.0518 26 6 7.1729 -1.9503 -0.4014 27 7 2.2953 -1.1025 -0.0005 28 6 1.8242 -2.4897 -0.0016 29 1 -0.3634 -0.0006 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 1.9544 2.1268 0.0004 33 1 4.5024 1.3091 0.0110 34 1 4.9893 0.4933 -1.4315 35 1 6.6168 0.8162 -0.7836 36 1 5.9306 -0.8429 -3.2549 37 1 6.7343 0.7454 -3.2322 38 1 8.6165 -0.2402 -1.9364 39 1 8.3980 -1.0640 -3.4987 40 1 12.5601 -2.9004 -2.9279 41 1 8.6793 -4.2901 -3.1643 42 1 10.3181 -4.3479 -2.4722 43 1 9.0391 -6.2721 -1.6629 44 1 9.3240 -5.1519 -0.3094 45 1 7.0377 -5.8316 -0.4353 46 1 6.9418 -2.8991 0.0828 47 1 7.8921 -1.3974 0.2027 48 1 1.7978 -2.8653 1.0213 49 1 0.8231 -2.5331 -0.4305 50 1 2.5012 -3.1028 -0.5966 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479651388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:07 Heat of formation + Delta-G solvation = -26.274882 kcal Electronic energy + Delta-G solvation = -30803.881781 eV Core-core repulsion = 26832.121777 eV Total energy + Delta-G solvation = -3971.760004 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.51857 -40.68151 -38.89369 -37.74298 -36.37997 -34.27098 -33.53475 -32.90618 -32.60022 -31.25255 -29.13284 -27.89732 -27.42363 -26.11787 -25.83063 -23.63919 -22.86022 -22.10057 -21.46244 -20.63876 -19.82556 -18.48380 -18.07673 -17.99734 -17.40680 -16.93262 -16.56522 -16.24952 -16.09741 -15.78260 -15.43304 -15.25285 -15.02228 -14.69937 -14.44130 -14.39534 -14.11253 -13.95172 -13.86997 -13.77854 -13.61006 -13.36785 -13.16428 -13.05774 -12.99011 -12.84931 -12.72302 -12.56515 -12.33171 -12.16845 -11.91297 -11.89547 -11.66604 -11.54411 -11.24762 -10.95276 -10.73052 -10.52698 -9.70137 -9.62089 -8.92896 -8.53446 -7.82439 -5.39432 0.54412 1.44555 1.49367 1.56855 1.59175 1.80189 2.27415 2.30870 2.52972 3.23999 3.52906 3.58321 3.71922 3.91117 3.98079 4.09889 4.14343 4.19298 4.28938 4.31529 4.34968 4.46726 4.52657 4.53988 4.59849 4.63274 4.67456 4.76268 4.78379 4.83776 4.85221 4.94137 4.98909 5.07860 5.12459 5.17746 5.22618 5.25386 5.29586 5.45957 5.54928 5.60569 5.65407 5.75876 5.94454 6.04487 6.34843 6.46563 6.48662 7.00283 7.13581 7.17561 7.85488 8.42120 9.16029 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018344 B = 0.003284 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.008143 B = 8524.037763 C = 9203.768917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.042 3.958 3 C -0.216 4.216 4 C -0.139 4.139 5 C -0.082 4.082 6 C 0.577 3.423 7 O -0.590 6.590 8 N -0.593 5.593 9 C 0.094 3.906 10 C -0.122 4.122 11 C -0.115 4.115 12 C 0.182 3.818 13 H 0.037 0.963 14 N -0.584 5.584 15 C -0.252 4.252 16 H 0.056 0.944 17 C -0.034 4.034 18 N -0.916 5.916 19 Si 0.952 3.048 20 H -0.272 1.272 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.149 3.851 24 C 0.067 3.933 25 O -0.578 6.578 26 C 0.126 3.874 27 N -0.419 5.419 28 C 0.072 3.928 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.052 0.948 39 H 0.037 0.963 40 H 0.252 0.748 41 H 0.019 0.981 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.028 0.972 45 H 0.378 0.622 46 H 0.067 0.933 47 H 0.052 0.948 48 H 0.075 0.925 49 H 0.118 0.882 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.527 6.365 2.762 22.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 C -0.239 4.239 4 C -0.166 4.166 5 C -0.194 4.194 6 C 0.368 3.632 7 O -0.472 6.472 8 N -0.324 5.324 9 C -0.027 4.027 10 C -0.160 4.160 11 C -0.155 4.155 12 C 0.074 3.926 13 H 0.055 0.945 14 N -0.304 5.304 15 C -0.382 4.382 16 H 0.073 0.927 17 C -0.231 4.231 18 N -0.561 5.561 19 Si 0.780 3.220 20 H -0.197 1.197 21 H -0.216 1.216 22 H -0.218 1.218 23 C 0.022 3.978 24 C -0.013 4.013 25 O -0.384 6.384 26 C 0.002 3.998 27 N -0.093 5.093 28 C -0.069 4.069 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.185 0.815 33 H 0.178 0.822 34 H 0.138 0.862 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.037 0.963 42 H 0.104 0.896 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.225 0.775 46 H 0.085 0.915 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.137 0.863 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.410 5.862 2.497 22.338 hybrid contribution 1.628 -0.936 0.849 2.061 sum -19.781 4.926 3.346 20.658 Atomic orbital electron populations 1.20534 0.84911 1.04836 1.03939 1.21270 0.95480 0.85107 1.05613 1.20982 0.91622 0.99054 1.12226 1.21746 0.99281 0.91165 1.04386 1.19918 0.84150 0.94244 1.21105 1.17494 0.82717 0.85136 0.77854 1.90741 1.84754 1.22477 1.49230 1.47899 1.08151 1.24497 1.51838 1.22472 1.04157 0.84669 0.91437 1.21895 0.95639 1.01617 0.96880 1.21814 0.96757 0.97353 0.99533 1.20497 0.86806 0.92455 0.92800 0.94505 1.43854 1.08573 1.14709 1.63225 1.19140 0.86131 1.27730 1.05239 0.92674 1.25690 0.99868 1.01298 0.96218 1.70114 1.18949 1.51881 1.15160 0.85465 0.79913 0.76990 0.79597 1.19676 1.21625 1.21817 1.20977 1.01019 0.83737 0.92050 1.22854 0.80902 0.98390 0.99137 1.86557 1.22860 1.60428 1.68533 1.21804 0.83585 0.95167 0.99214 1.43974 1.04322 1.07548 1.53489 1.22157 1.02024 0.78786 1.03890 0.89686 0.87984 0.90609 0.81457 0.82166 0.86193 0.90075 0.92638 0.88261 0.92924 0.94449 0.93896 0.96305 0.89565 0.93352 0.95321 0.77511 0.91492 0.92932 0.90602 0.86333 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 10.07 71.23 0.72 -0.10 16 2 C 0.04 0.79 6.87 41.34 0.28 1.07 16 3 C -0.22 -4.09 10.71 22.01 0.24 -3.85 16 4 C -0.14 -3.28 8.43 22.57 0.19 -3.09 16 5 C -0.08 -2.40 6.32 40.35 0.25 -2.14 16 6 C 0.58 21.18 7.41 86.45 0.64 21.82 16 7 O -0.59 -25.48 15.15 -4.31 -0.07 -25.55 16 8 N -0.59 -21.07 2.97 -823.62 -2.45 -23.52 16 9 C 0.09 2.59 5.11 86.36 0.44 3.03 16 10 C -0.12 -3.60 6.08 30.67 0.19 -3.42 16 11 C -0.12 -4.62 5.12 30.62 0.16 -4.46 16 12 C 0.18 8.13 2.22 45.07 0.10 8.23 16 13 H 0.04 1.76 7.75 -2.38 -0.02 1.74 16 14 N -0.58 -29.32 2.36 -677.60 -1.60 -30.92 16 15 C -0.25 -13.50 8.25 84.04 0.69 -12.80 16 16 H 0.06 2.99 6.74 -2.91 -0.02 2.97 16 17 C -0.03 -1.82 4.92 84.86 0.42 -1.40 16 18 N -0.92 -52.07 11.42 21.65 0.25 -51.82 16 19 Si 0.95 43.98 29.61 68.60 2.03 46.01 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 23 C 0.15 7.27 5.64 86.38 0.49 7.76 16 24 C 0.07 2.78 7.39 71.98 0.53 3.31 16 25 O -0.58 -23.26 12.41 -148.98 -1.85 -25.11 16 26 C 0.13 5.37 5.78 86.36 0.50 5.87 16 27 N -0.42 -10.27 3.16 -519.69 -1.64 -11.91 16 28 C 0.07 1.50 10.15 127.77 1.30 2.80 16 29 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.08 0.58 6.92 -2.39 -0.02 0.56 16 32 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 33 H 0.16 3.23 6.43 -2.91 -0.02 3.22 16 34 H 0.12 2.79 4.35 -2.39 -0.01 2.78 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.05 2.24 7.70 -2.39 -0.02 2.22 16 39 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 41 H 0.02 0.92 7.99 -2.39 -0.02 0.90 16 42 H 0.09 4.65 5.43 -2.39 -0.01 4.64 16 43 H 0.05 1.74 8.14 -2.38 -0.02 1.73 16 44 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.38 11.68 9.12 -74.05 -0.68 11.00 16 46 H 0.07 3.19 6.44 -2.39 -0.02 3.17 16 47 H 0.05 2.34 6.78 -2.39 -0.02 2.32 16 48 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.12 1.47 6.81 -2.39 -0.02 1.46 16 50 H 0.06 1.68 7.45 -2.39 -0.02 1.66 16 Total: -1.00 -71.94 388.41 2.08 -69.86 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.28 Total: 30.34 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: 7.13 Total: 22.62 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -5.44 Total: -118.17 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -1.91 Total: -50.65 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -71.94 2.08 -69.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479651388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.582 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds