Wall clock time and date at job start Tue Mar 31 2020 18:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 110.43833 * 2 1 4 4 O 1.21288 * 119.99766 * 122.34702 * 3 2 1 5 5 N 1.34773 * 120.00385 * 302.34989 * 3 2 1 6 6 C 1.46494 * 120.00566 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47371 * 179.97438 * 6 5 3 8 8 N 1.46900 * 109.47391 * 180.02562 * 7 6 5 9 9 C 1.46900 * 111.00363 * 190.00035 * 8 7 6 10 10 C 1.50701 * 109.47375 * 162.31450 * 9 8 7 11 11 O 1.21300 * 119.99765 * 1.34218 * 10 9 8 12 12 N 1.34767 * 120.00169 * 181.34579 * 10 9 8 13 13 C 1.37097 * 120.00368 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99722 * 359.97438 * 13 12 10 15 15 C 1.38944 * 120.00532 * 179.97438 * 13 12 10 16 16 N 1.31406 * 120.00421 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99698 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47104 * 89.99926 * 17 15 13 19 19 H 1.48508 * 109.47134 * 209.99838 * 17 15 13 20 20 H 1.48497 * 109.47383 * 329.99709 * 17 15 13 21 21 C 1.46897 * 111.00084 * 66.04296 * 8 7 6 22 22 C 1.53001 * 117.50023 * 127.70734 * 21 8 7 23 23 C 1.52995 * 117.49986 * 59.08588 * 21 8 7 24 24 C 1.51171 * 110.38011 * 237.60795 * 2 1 3 25 25 C 1.30523 * 111.12039 * 257.59757 * 24 2 1 26 26 C 1.51104 * 111.10615 * 0.02991 * 25 24 2 27 27 C 1.54637 * 110.38709 * 122.34935 * 2 1 3 28 28 H 1.09000 * 109.46957 * 297.65410 * 1 2 3 29 29 H 1.09003 * 109.47083 * 57.64904 * 1 2 3 30 30 H 1.08997 * 109.47659 * 177.65221 * 1 2 3 31 31 H 0.97005 * 119.99534 * 359.97438 * 5 3 2 32 32 H 1.09003 * 109.47456 * 300.00395 * 6 5 3 33 33 H 1.09002 * 109.46648 * 59.99966 * 6 5 3 34 34 H 1.09001 * 109.47156 * 299.99843 * 7 6 5 35 35 H 1.09002 * 109.47195 * 60.00384 * 7 6 5 36 36 H 1.08997 * 109.47280 * 282.32046 * 9 8 7 37 37 H 1.09009 * 109.46864 * 42.31650 * 9 8 7 38 38 H 0.97002 * 120.00108 * 359.97438 * 12 10 9 39 39 H 0.97001 * 120.00272 * 180.02562 * 16 15 13 40 40 H 1.09001 * 115.55441 * 273.40974 * 21 8 7 41 41 H 1.09001 * 117.49706 * 359.97438 * 22 21 8 42 42 H 1.08994 * 117.50347 * 145.01742 * 22 21 8 43 43 H 1.09001 * 117.50453 * 214.97896 * 23 21 8 44 44 H 1.08999 * 117.49876 * 359.97438 * 23 21 8 45 45 H 1.07998 * 124.42717 * 77.61628 * 24 2 1 46 46 H 1.08002 * 124.44930 * 180.02562 * 25 24 2 47 47 H 1.09008 * 110.38790 * 224.75675 * 26 25 24 48 48 H 1.08991 * 110.39040 * 102.37707 * 26 25 24 49 49 H 1.09006 * 111.03595 * 336.14600 * 27 2 1 50 50 H 1.08997 * 111.03733 * 212.24769 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4121 0.0000 4 8 2.7946 1.7841 0.8874 5 7 1.7063 2.2617 -0.9860 6 6 2.2174 3.6346 -0.9857 7 6 1.6729 4.3818 -2.2047 8 7 2.1859 5.7583 -2.2048 9 6 1.5045 6.5741 -3.2188 10 6 1.7199 8.0346 -2.9163 11 8 2.3966 8.3636 -1.9649 12 7 1.1605 8.9753 -3.7028 13 6 1.3568 10.3040 -3.4279 14 1 1.9594 10.5969 -2.5809 15 6 0.7806 11.2739 -4.2390 16 7 0.9683 12.5474 -3.9753 17 14 -0.2611 10.7672 -5.7046 18 1 -1.6784 10.6332 -5.2818 19 1 -0.1569 11.8000 -6.7666 20 1 0.2237 9.4659 -6.2303 21 6 3.6411 5.7778 -2.4042 22 6 4.1895 6.6706 -3.5192 23 6 4.1866 5.1500 -3.6884 24 6 2.0564 -0.7591 -1.1966 25 6 2.4653 -1.9506 -0.8549 26 6 2.2795 -2.1858 0.6261 27 6 2.0687 -0.7756 1.2245 28 1 -0.3633 0.4770 0.9103 29 1 -0.3633 0.5499 -0.8682 30 1 -0.3634 -1.0267 -0.0421 31 1 1.1160 1.9641 -1.6959 32 1 1.8971 4.1415 -0.0754 33 1 3.3065 3.6168 -1.0276 34 1 1.9937 3.8749 -3.1148 35 1 0.5838 4.3996 -2.1633 36 1 1.9105 6.3433 -4.2036 37 1 0.4370 6.3538 -3.2051 38 1 0.6196 8.7123 -4.4638 39 1 0.5657 13.2245 -4.5413 40 1 4.2411 5.6758 -1.4999 41 1 3.4703 7.2432 -4.1050 42 1 5.1502 7.1562 -3.3486 43 1 5.1455 4.6352 -3.6291 44 1 3.4657 4.7221 -4.3851 45 1 2.0900 -0.3667 -2.2022 46 1 2.8818 -2.6736 -1.5407 47 1 3.1694 -2.6497 1.0516 48 1 1.4032 -2.8089 0.8046 49 1 1.3327 -0.7977 2.0284 50 1 3.0115 -0.3529 1.5716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481182496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:28 Heat of formation + Delta-G solvation = -6.856092 kcal Electronic energy + Delta-G solvation = -28940.457359 eV Core-core repulsion = 24969.539417 eV Total energy + Delta-G solvation = -3970.917942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.81858 -39.68674 -38.14369 -37.43331 -35.33396 -33.91682 -33.31257 -31.77168 -31.60501 -29.69180 -29.08530 -26.65229 -25.76915 -24.10444 -23.48684 -22.04695 -21.82640 -20.34763 -19.98625 -19.23491 -18.99552 -18.11278 -17.50441 -17.00667 -16.28832 -15.91662 -15.82805 -15.30714 -15.27102 -14.82673 -14.48069 -14.06915 -13.90017 -13.63578 -13.62879 -13.25202 -13.24337 -12.87812 -12.70623 -12.51452 -12.39195 -12.21335 -12.05710 -11.91433 -11.69118 -11.62623 -11.57731 -11.31369 -11.20873 -11.12607 -11.03964 -10.60321 -10.50353 -10.06941 -9.97023 -9.93515 -9.52104 -9.34223 -9.20437 -8.60595 -8.15395 -8.00498 -6.28959 -3.80187 1.73403 2.51023 2.88867 3.01540 3.06420 3.14850 3.72966 3.88884 4.01358 4.03852 4.11061 4.17712 4.53897 4.56697 4.64739 4.78831 4.84112 4.90829 4.98426 5.05380 5.09412 5.13007 5.14238 5.20155 5.23263 5.26591 5.35289 5.46143 5.48328 5.50249 5.64270 5.66244 5.72302 5.75149 5.83930 5.89125 5.91324 5.96238 6.01755 6.13905 6.23941 6.25354 6.39157 6.39967 7.00239 7.16179 7.29497 7.60178 8.04800 8.16447 8.62785 8.98198 9.44556 9.86772 10.84344 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023658 B = 0.002067 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.232457 B =13546.220464 C =13805.421287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 C 0.527 3.473 4 O -0.535 6.535 5 N -0.727 5.727 6 C 0.124 3.876 7 C 0.047 3.953 8 N -0.480 5.480 9 C 0.036 3.964 10 C 0.456 3.544 11 O -0.547 6.547 12 N -0.596 5.596 13 C -0.301 4.301 14 H 0.120 0.880 15 C 0.040 3.960 16 N -0.883 5.883 17 Si 0.879 3.121 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.271 1.271 21 C 0.042 3.958 22 C -0.166 4.166 23 C -0.227 4.227 24 C -0.160 4.160 25 C -0.150 4.150 26 C -0.104 4.104 27 C -0.108 4.108 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.398 0.602 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.368 0.632 39 H 0.273 0.727 40 H 0.124 0.876 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.411 -30.375 0.699 30.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.062 4.062 3 C 0.312 3.688 4 O -0.411 6.411 5 N -0.378 5.378 6 C 0.000 4.000 7 C -0.081 4.081 8 N -0.202 5.202 9 C -0.096 4.096 10 C 0.241 3.759 11 O -0.427 6.427 12 N -0.237 5.237 13 C -0.430 4.430 14 H 0.137 0.863 15 C -0.162 4.162 16 N -0.523 5.523 17 Si 0.705 3.295 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.196 1.196 21 C -0.067 4.067 22 C -0.204 4.204 23 C -0.266 4.266 24 C -0.179 4.179 25 C -0.168 4.168 26 C -0.141 4.141 27 C -0.145 4.145 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.201 0.799 39 H 0.083 0.917 40 H 0.141 0.859 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.093 0.907 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.560 -29.400 2.442 29.506 hybrid contribution -1.029 -0.570 -2.664 2.912 sum -1.589 -29.970 -0.222 30.013 Atomic orbital electron populations 1.21764 0.91574 1.02970 1.02696 1.20703 0.97193 0.92105 0.96157 1.20367 0.80445 0.86723 0.81239 1.90708 1.36235 1.77726 1.36425 1.45914 1.51377 1.12734 1.27807 1.21260 0.99352 0.80205 0.99160 1.22252 1.00061 0.89069 0.96707 1.61438 1.02438 1.08383 1.47930 1.22044 0.99415 0.94336 0.93769 1.19496 0.84817 0.85904 0.85692 1.90589 1.40923 1.81620 1.29603 1.42208 1.47422 1.06822 1.27204 1.19405 1.30827 0.78716 1.14026 0.86274 1.25022 0.98012 0.95054 0.98162 1.69617 1.44257 0.99334 1.39109 0.86692 0.81231 0.78558 0.82978 1.19679 1.20261 1.19644 1.22636 0.87969 1.03628 0.92497 1.23250 1.03420 0.91955 1.01726 1.23467 1.03128 0.97147 1.02903 1.23040 1.00967 0.96109 0.97748 1.23341 0.98816 0.97339 0.97259 1.21429 1.02085 0.97593 0.92970 1.22513 1.02896 0.93617 0.95505 0.91616 0.91971 0.91284 0.76853 0.90260 0.91098 0.94129 0.90214 0.92681 0.89318 0.79916 0.91685 0.85885 0.88012 0.88401 0.88821 0.89530 0.85430 0.85402 0.90739 0.90419 0.90393 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.80 8.39 37.16 0.31 -0.49 16 2 C -0.06 -0.46 0.74 -155.72 -0.12 -0.58 16 3 C 0.53 5.84 6.55 -10.99 -0.07 5.77 16 4 O -0.53 -8.23 15.48 5.55 0.09 -8.15 16 5 N -0.73 -6.72 5.42 -60.30 -0.33 -7.05 16 6 C 0.12 1.43 5.67 -4.05 -0.02 1.40 16 7 C 0.05 0.52 4.96 -3.83 -0.02 0.50 16 8 N -0.48 -7.29 4.34 -228.09 -0.99 -8.29 16 9 C 0.04 0.58 5.00 -4.98 -0.02 0.55 16 10 C 0.46 10.08 5.84 -10.99 -0.06 10.02 16 11 O -0.55 -14.41 14.79 5.54 0.08 -14.33 16 12 N -0.60 -13.93 5.09 -10.97 -0.06 -13.98 16 13 C -0.30 -8.43 10.16 -14.94 -0.15 -8.58 16 14 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 15 C 0.04 1.09 5.50 -17.47 -0.10 1.00 16 16 N -0.88 -25.77 13.96 55.50 0.77 -25.00 16 17 Si 0.88 19.23 27.74 -169.99 -4.71 14.51 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 21 C 0.04 0.63 4.55 -67.72 -0.31 0.32 16 22 C -0.17 -2.64 8.48 -26.73 -0.23 -2.87 16 23 C -0.23 -2.83 9.26 -26.74 -0.25 -3.08 16 24 C -0.16 -1.09 9.37 -35.66 -0.33 -1.43 16 25 C -0.15 -0.93 10.77 -35.69 -0.38 -1.32 16 26 C -0.10 -0.63 6.81 -26.82 -0.18 -0.82 16 27 C -0.11 -0.87 6.01 -25.01 -0.15 -1.02 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.31 7.45 -51.93 -0.39 -0.08 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.40 2.52 7.79 -40.82 -0.32 2.20 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.91 7.30 -51.93 -0.38 0.53 16 34 H 0.04 0.39 6.87 -51.93 -0.36 0.03 16 35 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 36 H 0.06 0.80 5.99 -51.93 -0.31 0.48 16 37 H 0.09 1.22 7.78 -51.92 -0.40 0.82 16 38 H 0.37 7.56 5.76 -40.82 -0.24 7.32 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.12 1.89 8.03 -51.93 -0.42 1.47 16 41 H 0.10 1.81 4.92 -51.93 -0.26 1.56 16 42 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.09 1.00 7.15 -51.93 -0.37 0.63 16 45 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 47 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 48 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.08 0.56 7.90 -51.93 -0.41 0.15 16 50 H 0.09 0.93 6.99 -51.93 -0.36 0.57 16 LS Contribution 396.19 15.07 5.97 5.97 Total: -1.00 -34.53 396.19 -9.24 -43.77 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -7.97 Total: 13.15 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.09 Total: -0.62 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.60 Total: -54.31 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: 0.17 Total: -22.47 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.53 -9.24 -43.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481182496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.909 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds