Wall clock time and date at job start Tue Mar 31 2020 18:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 110.43833 * 2 1 4 4 O 1.21288 * 119.99766 * 122.34702 * 3 2 1 5 5 N 1.34773 * 120.00385 * 302.34989 * 3 2 1 6 6 C 1.46494 * 120.00566 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47371 * 179.97438 * 6 5 3 8 8 N 1.46900 * 109.47391 * 180.02562 * 7 6 5 9 9 C 1.46900 * 111.00363 * 190.00035 * 8 7 6 10 10 C 1.50701 * 109.47375 * 162.31450 * 9 8 7 11 11 O 1.21300 * 119.99765 * 1.34218 * 10 9 8 12 12 N 1.34767 * 120.00169 * 181.34579 * 10 9 8 13 13 C 1.37097 * 120.00368 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99722 * 359.97438 * 13 12 10 15 15 C 1.38944 * 120.00532 * 179.97438 * 13 12 10 16 16 N 1.31406 * 120.00421 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99698 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47104 * 89.99926 * 17 15 13 19 19 H 1.48508 * 109.47134 * 209.99838 * 17 15 13 20 20 H 1.48497 * 109.47383 * 329.99709 * 17 15 13 21 21 C 1.46897 * 111.00084 * 66.04296 * 8 7 6 22 22 C 1.53001 * 117.50023 * 127.70734 * 21 8 7 23 23 C 1.52995 * 117.49986 * 59.08588 * 21 8 7 24 24 C 1.51171 * 110.38011 * 237.60795 * 2 1 3 25 25 C 1.30523 * 111.12039 * 257.59757 * 24 2 1 26 26 C 1.51104 * 111.10615 * 0.02991 * 25 24 2 27 27 C 1.54637 * 110.38709 * 122.34935 * 2 1 3 28 28 H 1.09000 * 109.46957 * 297.65410 * 1 2 3 29 29 H 1.09003 * 109.47083 * 57.64904 * 1 2 3 30 30 H 1.08997 * 109.47659 * 177.65221 * 1 2 3 31 31 H 0.97005 * 119.99534 * 359.97438 * 5 3 2 32 32 H 1.09003 * 109.47456 * 300.00395 * 6 5 3 33 33 H 1.09002 * 109.46648 * 59.99966 * 6 5 3 34 34 H 1.09001 * 109.47156 * 299.99843 * 7 6 5 35 35 H 1.09002 * 109.47195 * 60.00384 * 7 6 5 36 36 H 1.08997 * 109.47280 * 282.32046 * 9 8 7 37 37 H 1.09009 * 109.46864 * 42.31650 * 9 8 7 38 38 H 0.97002 * 120.00108 * 359.97438 * 12 10 9 39 39 H 0.97001 * 120.00272 * 180.02562 * 16 15 13 40 40 H 1.09001 * 115.55441 * 273.40974 * 21 8 7 41 41 H 1.09001 * 117.49706 * 359.97438 * 22 21 8 42 42 H 1.08994 * 117.50347 * 145.01742 * 22 21 8 43 43 H 1.09001 * 117.50453 * 214.97896 * 23 21 8 44 44 H 1.08999 * 117.49876 * 359.97438 * 23 21 8 45 45 H 1.07998 * 124.42717 * 77.61628 * 24 2 1 46 46 H 1.08002 * 124.44930 * 180.02562 * 25 24 2 47 47 H 1.09008 * 110.38790 * 224.75675 * 26 25 24 48 48 H 1.08991 * 110.39040 * 102.37707 * 26 25 24 49 49 H 1.09006 * 111.03595 * 336.14600 * 27 2 1 50 50 H 1.08997 * 111.03733 * 212.24769 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4121 0.0000 4 8 2.7946 1.7841 0.8874 5 7 1.7063 2.2617 -0.9860 6 6 2.2174 3.6346 -0.9857 7 6 1.6729 4.3818 -2.2047 8 7 2.1859 5.7583 -2.2048 9 6 1.5045 6.5741 -3.2188 10 6 1.7199 8.0346 -2.9163 11 8 2.3966 8.3636 -1.9649 12 7 1.1605 8.9753 -3.7028 13 6 1.3568 10.3040 -3.4279 14 1 1.9594 10.5969 -2.5809 15 6 0.7806 11.2739 -4.2390 16 7 0.9683 12.5474 -3.9753 17 14 -0.2611 10.7672 -5.7046 18 1 -1.6784 10.6332 -5.2818 19 1 -0.1569 11.8000 -6.7666 20 1 0.2237 9.4659 -6.2303 21 6 3.6411 5.7778 -2.4042 22 6 4.1895 6.6706 -3.5192 23 6 4.1866 5.1500 -3.6884 24 6 2.0564 -0.7591 -1.1966 25 6 2.4653 -1.9506 -0.8549 26 6 2.2795 -2.1858 0.6261 27 6 2.0687 -0.7756 1.2245 28 1 -0.3633 0.4770 0.9103 29 1 -0.3633 0.5499 -0.8682 30 1 -0.3634 -1.0267 -0.0421 31 1 1.1160 1.9641 -1.6959 32 1 1.8971 4.1415 -0.0754 33 1 3.3065 3.6168 -1.0276 34 1 1.9937 3.8749 -3.1148 35 1 0.5838 4.3996 -2.1633 36 1 1.9105 6.3433 -4.2036 37 1 0.4370 6.3538 -3.2051 38 1 0.6196 8.7123 -4.4638 39 1 0.5657 13.2245 -4.5413 40 1 4.2411 5.6758 -1.4999 41 1 3.4703 7.2432 -4.1050 42 1 5.1502 7.1562 -3.3486 43 1 5.1455 4.6352 -3.6291 44 1 3.4657 4.7221 -4.3851 45 1 2.0900 -0.3667 -2.2022 46 1 2.8818 -2.6736 -1.5407 47 1 3.1694 -2.6497 1.0516 48 1 1.4032 -2.8089 0.8046 49 1 1.3327 -0.7977 2.0284 50 1 3.0115 -0.3529 1.5716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481182496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:27 Heat of formation + Delta-G solvation = -33.175616 kcal Electronic energy + Delta-G solvation = -28941.598659 eV Core-core repulsion = 24969.539417 eV Total energy + Delta-G solvation = -3972.059242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.57724 -41.02959 -39.20200 -38.70385 -36.31373 -35.89426 -34.40271 -33.69418 -32.36051 -30.64121 -29.77734 -27.98647 -26.41212 -25.81587 -24.41937 -23.11022 -22.71038 -21.54066 -21.00185 -20.69703 -19.94417 -19.66190 -18.21649 -18.08324 -17.63312 -17.19818 -16.76168 -16.63005 -16.15675 -16.02676 -15.52175 -15.34367 -15.11715 -14.94209 -14.79933 -14.43151 -14.29814 -13.97466 -13.78938 -13.59318 -13.42372 -13.20454 -13.07185 -12.94175 -12.74257 -12.59645 -12.39471 -12.30591 -12.21135 -12.18391 -12.10883 -11.96574 -11.73510 -11.61632 -11.47273 -11.09262 -10.86040 -10.36872 -10.19551 -10.11173 -9.85943 -9.19131 -8.37854 -5.98096 1.24051 1.30275 1.37034 1.45205 1.68988 2.00327 2.04899 2.25130 2.73132 2.87284 3.15794 3.23961 3.47188 3.62197 3.72459 3.90801 3.94684 3.97234 4.02512 4.06574 4.13260 4.20762 4.32744 4.35806 4.40408 4.43265 4.52726 4.62990 4.71080 4.79251 4.80909 4.90207 4.95423 4.96387 4.99084 5.02501 5.14159 5.15561 5.19837 5.21457 5.32075 5.41623 5.55904 5.56116 5.88221 5.94965 6.01536 6.10516 6.54918 6.64067 6.93834 7.25570 7.44984 8.04591 8.80115 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023658 B = 0.002067 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.232457 B =13546.220464 C =13805.421287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.054 4.054 3 C 0.521 3.479 4 O -0.588 6.588 5 N -0.709 5.709 6 C 0.132 3.868 7 C 0.056 3.944 8 N -0.507 5.507 9 C 0.049 3.951 10 C 0.457 3.543 11 O -0.599 6.599 12 N -0.597 5.597 13 C -0.321 4.321 14 H 0.053 0.947 15 C -0.020 4.020 16 N -0.938 5.938 17 Si 0.965 3.035 18 H -0.257 1.257 19 H -0.278 1.278 20 H -0.230 1.230 21 C 0.027 3.973 22 C -0.196 4.196 23 C -0.181 4.181 24 C -0.171 4.171 25 C -0.148 4.148 26 C -0.102 4.102 27 C -0.115 4.115 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.416 0.584 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.125 0.875 38 H 0.388 0.612 39 H 0.277 0.723 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.077 0.923 48 H 0.095 0.905 49 H 0.081 0.919 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.819 -34.680 -2.846 35.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.057 4.057 3 C 0.308 3.692 4 O -0.468 6.468 5 N -0.361 5.361 6 C 0.008 3.992 7 C -0.071 4.071 8 N -0.230 5.230 9 C -0.082 4.082 10 C 0.244 3.756 11 O -0.481 6.481 12 N -0.240 5.240 13 C -0.450 4.450 14 H 0.071 0.929 15 C -0.217 4.217 16 N -0.580 5.580 17 Si 0.785 3.215 18 H -0.182 1.182 19 H -0.203 1.203 20 H -0.153 1.153 21 C -0.081 4.081 22 C -0.234 4.234 23 C -0.220 4.220 24 C -0.189 4.189 25 C -0.165 4.165 26 C -0.139 4.139 27 C -0.153 4.153 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.254 0.746 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.102 0.898 37 H 0.143 0.857 38 H 0.223 0.777 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.161 0.839 46 H 0.165 0.835 47 H 0.095 0.905 48 H 0.113 0.887 49 H 0.100 0.900 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.991 -33.758 -1.133 33.910 hybrid contribution -0.154 0.789 -1.364 1.583 sum -3.144 -32.970 -2.498 33.213 Atomic orbital electron populations 1.21786 0.89848 1.04151 1.02977 1.20727 0.98443 0.89762 0.96762 1.21062 0.79558 0.88037 0.80521 1.90689 1.38689 1.78882 1.38505 1.45722 1.51000 1.11515 1.27905 1.20998 0.98470 0.81259 0.98521 1.22268 1.01108 0.86640 0.97112 1.61255 1.02391 1.10921 1.48408 1.21923 1.01832 0.89304 0.95091 1.20778 0.82384 0.88475 0.83961 1.90572 1.42657 1.83155 1.31765 1.42018 1.48427 1.05159 1.28372 1.18945 1.31326 0.81656 1.13112 0.92934 1.26120 0.99206 0.94439 1.01980 1.69814 1.45873 1.01176 1.41107 0.85363 0.78970 0.79897 0.77249 1.18163 1.20311 1.15288 1.22566 0.88321 1.04447 0.92807 1.23171 1.02618 0.94380 1.03207 1.23506 1.04040 0.93945 1.00474 1.23136 1.01734 0.96179 0.97836 1.23572 0.98007 0.97624 0.97327 1.21449 1.03021 0.96332 0.93059 1.22525 1.01566 0.95079 0.96148 0.92537 0.90407 0.89765 0.74628 0.93277 0.92741 0.91194 0.88006 0.89819 0.85700 0.77671 0.91326 0.87506 0.89895 0.89819 0.87137 0.87052 0.83853 0.83516 0.90471 0.88709 0.89998 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 8.39 71.98 0.60 -0.63 16 2 C -0.05 -0.77 0.74 -52.97 -0.04 -0.81 16 3 C 0.52 11.23 6.55 87.66 0.57 11.80 16 4 O -0.59 -18.85 15.48 -3.05 -0.05 -18.90 16 5 N -0.71 -11.66 5.42 -463.08 -2.51 -14.17 16 6 C 0.13 2.90 5.67 86.38 0.49 3.39 16 7 C 0.06 1.02 4.96 86.30 0.43 1.45 16 8 N -0.51 -14.46 4.34 -875.53 -3.80 -18.26 16 9 C 0.05 1.44 5.00 85.56 0.43 1.86 16 10 C 0.46 20.22 5.84 87.66 0.51 20.73 16 11 O -0.60 -33.12 14.79 -3.09 -0.05 -33.17 16 12 N -0.60 -27.73 5.09 -306.99 -1.56 -29.29 16 13 C -0.32 -18.80 10.16 84.04 0.85 -17.94 16 14 H 0.05 3.70 7.39 -2.91 -0.02 3.67 16 15 C -0.02 -1.09 5.50 84.93 0.47 -0.62 16 16 N -0.94 -57.08 13.96 21.66 0.30 -56.78 16 17 Si 0.97 38.55 27.74 68.60 1.90 40.45 16 18 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 19 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.23 -7.58 6.52 99.48 0.65 -6.93 16 21 C 0.03 0.81 4.55 44.91 0.20 1.02 16 22 C -0.20 -6.20 8.48 30.59 0.26 -5.94 16 23 C -0.18 -3.94 9.26 30.59 0.28 -3.66 16 24 C -0.17 -1.84 9.37 26.29 0.25 -1.59 16 25 C -0.15 -1.42 10.77 26.27 0.28 -1.14 16 26 C -0.10 -1.05 6.81 30.53 0.21 -0.84 16 27 C -0.12 -1.82 6.01 31.71 0.19 -1.63 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.49 7.45 -2.39 -0.02 0.47 16 30 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.42 3.69 7.79 -92.70 -0.72 2.97 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.05 1.39 7.30 -2.39 -0.02 1.37 16 34 H 0.07 0.93 6.87 -2.39 -0.02 0.91 16 35 H 0.10 1.47 7.85 -2.39 -0.02 1.45 16 36 H 0.08 2.02 5.99 -2.39 -0.01 2.01 16 37 H 0.13 2.78 7.78 -2.38 -0.02 2.77 16 38 H 0.39 14.78 5.76 -92.71 -0.53 14.25 16 39 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.11 3.42 8.03 -2.39 -0.02 3.40 16 41 H 0.08 2.92 4.92 -2.39 -0.01 2.91 16 42 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.11 1.93 7.15 -2.39 -0.02 1.91 16 45 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 46 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 47 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 48 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.08 1.16 7.90 -2.38 -0.02 1.14 16 50 H 0.06 1.31 6.99 -2.39 -0.02 1.30 16 Total: -1.00 -85.09 396.19 -0.12 -85.21 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: -0.35 Total: 39.46 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 5.99 Total: 5.45 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -7.57 Total: -118.51 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -0.09 Total: -52.07 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 1.90 Total: 40.45 kcal Total: -85.09 -0.12 -85.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481182496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.033 kcal (2) G-P(sol) polarization free energy of solvation -85.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds