Wall clock time and date at job start Tue Mar 31 2020 18:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.64058 * 2 1 4 4 O 1.21279 * 120.00017 * 121.56034 * 3 2 1 5 5 N 1.34776 * 119.99656 * 301.56465 * 3 2 1 6 6 C 1.46502 * 119.99737 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.47058 * 174.99402 * 6 5 3 8 8 N 1.46890 * 115.55082 * 80.18974 * 7 6 5 9 9 C 1.46901 * 110.99982 * 65.12162 * 8 7 6 10 10 C 1.50703 * 109.47126 * 180.02562 * 9 8 7 11 11 O 1.21298 * 119.99706 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00243 * 179.97438 * 10 9 8 13 13 C 1.37101 * 120.00098 * 179.97438 * 12 10 9 14 14 H 1.07994 * 119.99709 * 0.02562 * 13 12 10 15 15 C 1.38952 * 119.99899 * 179.97438 * 13 12 10 16 16 N 1.31412 * 119.99586 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99782 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47291 * 89.99986 * 17 15 13 19 19 H 1.48504 * 109.46819 * 209.99640 * 17 15 13 20 20 H 1.48496 * 109.47159 * 329.99340 * 17 15 13 21 21 C 1.53005 * 117.49596 * 225.86017 * 7 6 5 22 22 C 1.53002 * 117.49507 * 294.51712 * 7 6 5 23 23 C 1.53022 * 109.64144 * 120.41828 * 2 1 3 24 24 C 1.50551 * 109.88760 * 169.16124 * 23 2 1 25 25 C 1.29439 * 124.16092 * 343.00176 * 24 23 2 26 26 C 1.50077 * 124.07621 * 0.41088 * 25 24 23 27 27 C 1.53028 * 110.14182 * 342.86929 * 26 25 24 28 28 H 1.08999 * 109.47458 * 59.99792 * 1 2 3 29 29 H 1.09001 * 109.47499 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47197 * 300.00074 * 1 2 3 31 31 H 0.96998 * 120.00382 * 359.97438 * 5 3 2 32 32 H 1.09006 * 109.47250 * 54.99371 * 6 5 3 33 33 H 1.08995 * 109.47419 * 294.99169 * 6 5 3 34 34 H 1.00907 * 111.00287 * 189.07556 * 8 7 6 35 35 H 1.08995 * 109.47074 * 300.03619 * 9 8 7 36 36 H 1.08996 * 109.47405 * 60.04515 * 9 8 7 37 37 H 0.96998 * 119.99908 * 0.02562 * 12 10 9 38 38 H 0.97002 * 119.99415 * 180.02562 * 16 15 13 39 39 H 1.08994 * 117.49641 * 215.00237 * 21 7 6 40 40 H 1.09003 * 117.49901 * 0.02562 * 21 7 6 41 41 H 1.08996 * 117.50231 * 359.97438 * 22 7 6 42 42 H 1.08998 * 117.49409 * 144.97397 * 22 7 6 43 43 H 1.08996 * 109.35956 * 289.53539 * 23 2 1 44 44 H 1.09000 * 109.36096 * 49.12868 * 23 2 1 45 45 H 1.08003 * 117.87836 * 162.91544 * 24 23 2 46 46 H 1.08000 * 117.96748 * 180.43402 * 25 24 23 47 47 H 1.08998 * 109.35582 * 222.66299 * 26 25 24 48 48 H 1.08996 * 109.24640 * 103.00406 * 26 25 24 49 49 H 1.08991 * 109.64354 * 289.74676 * 27 26 25 50 50 H 1.09005 * 109.81397 * 169.22357 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0365 1.4194 0.0000 4 8 2.7581 1.8057 0.8950 5 7 1.6875 2.2593 -0.9945 6 6 2.1795 3.6393 -0.9943 7 6 1.7435 4.3364 -2.2846 8 7 0.3595 4.8280 -2.3027 9 6 0.1672 5.8962 -1.3127 10 6 -1.2613 6.3738 -1.3600 11 8 -2.0426 5.8732 -2.1413 12 7 -1.6711 7.3564 -0.5336 13 6 -2.9706 7.7912 -0.5770 14 1 -3.6659 7.3461 -1.2732 15 6 -3.3932 8.8039 0.2754 16 7 -4.6389 9.2203 0.2341 17 14 -2.1905 9.5733 1.4800 18 1 -1.5205 10.7327 0.8381 19 1 -2.9240 10.0315 2.6872 20 1 -1.1711 8.5673 1.8723 21 6 2.7949 5.1578 -3.0337 22 6 2.3255 3.8154 -3.6003 23 6 2.0443 -0.7297 1.2428 24 6 3.5260 -0.9668 1.1209 25 6 4.1844 -0.8955 0.0088 26 6 3.5643 -0.5574 -1.3154 27 6 2.0455 -0.7315 -1.2457 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.1107 1.9503 -1.7105 32 1 3.2678 3.6371 -0.9323 33 1 1.7678 4.1716 -0.1369 34 1 0.0984 5.1397 -3.2263 35 1 0.3896 5.5129 -0.3169 36 1 0.8354 6.7268 -1.5400 37 1 -1.0465 7.7564 0.0914 38 1 -4.9338 9.9276 0.8289 39 1 2.4595 6.0629 -3.5398 40 1 3.7972 5.2012 -2.6074 41 1 3.0192 2.9764 -3.5465 42 1 1.6812 3.8371 -4.4791 43 1 1.8419 -0.1248 2.1266 44 1 1.5320 -1.6871 1.3376 45 1 4.0740 -1.2106 2.0191 46 1 5.2461 -1.0919 0.0353 47 1 3.9688 -1.2173 -2.0828 48 1 3.7982 0.4767 -1.5681 49 1 1.8010 -1.7913 -1.1758 50 1 1.5837 -0.3070 -2.1372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483737136.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:15 Heat of formation + Delta-G solvation = -34.242602 kcal Electronic energy + Delta-G solvation = -29585.379537 eV Core-core repulsion = 25613.274027 eV Total energy + Delta-G solvation = -3972.105510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.88206 -39.21267 -38.07961 -37.26282 -34.39621 -34.06224 -33.05348 -32.72698 -31.65303 -31.00384 -27.44743 -26.81743 -26.73234 -23.92530 -23.41301 -23.15857 -22.47791 -20.10420 -19.77335 -19.40749 -18.38176 -18.27666 -16.59064 -16.50927 -16.26756 -15.94294 -15.45913 -15.25775 -15.05369 -14.85049 -14.31457 -14.07619 -14.02474 -13.87804 -13.73378 -13.11862 -13.08418 -12.89073 -12.68160 -12.62645 -12.40538 -12.29183 -12.21818 -12.16960 -12.11970 -11.76369 -11.72649 -11.70245 -11.23408 -10.94463 -10.66717 -10.60272 -10.41128 -10.37998 -9.99256 -9.67582 -9.59309 -9.16967 -8.99262 -8.59370 -8.23178 -8.17718 -6.33140 -3.84683 2.20120 2.65906 2.97819 3.02768 3.06211 3.14730 3.59368 3.70314 3.99000 4.09149 4.28148 4.40236 4.40557 4.43109 4.58785 4.74738 4.80400 4.86043 4.92205 5.04893 5.10756 5.19628 5.21193 5.39020 5.40215 5.45240 5.47761 5.49934 5.51040 5.57432 5.60788 5.62535 5.67717 5.70344 5.79725 5.83921 5.88458 5.89591 5.91329 5.93618 5.98630 6.39938 6.47903 6.81935 6.97939 7.41921 7.52336 7.55656 8.11789 8.23158 8.57036 8.92429 9.40081 9.79333 10.79847 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.002651 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.758585 B =10558.379391 C =11265.632496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C 0.526 3.474 4 O -0.539 6.539 5 N -0.716 5.716 6 C 0.168 3.832 7 C 0.037 3.963 8 N -0.626 5.626 9 C 0.047 3.953 10 C 0.450 3.550 11 O -0.566 6.566 12 N -0.589 5.589 13 C -0.305 4.305 14 H 0.120 0.880 15 C 0.042 3.958 16 N -0.880 5.880 17 Si 0.879 3.121 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.269 1.269 21 C -0.207 4.207 22 C -0.163 4.163 23 C -0.068 4.068 24 C -0.133 4.133 25 C -0.166 4.166 26 C -0.092 4.092 27 C -0.106 4.106 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.405 0.595 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.356 0.644 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.371 0.629 38 H 0.274 0.726 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.076 0.924 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.893 -18.685 -2.996 26.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 C 0.312 3.688 4 O -0.415 6.415 5 N -0.368 5.368 6 C 0.044 3.956 7 C -0.057 4.057 8 N -0.257 5.257 9 C -0.085 4.085 10 C 0.235 3.765 11 O -0.448 6.448 12 N -0.228 5.228 13 C -0.434 4.434 14 H 0.137 0.863 15 C -0.161 4.161 16 N -0.520 5.520 17 Si 0.705 3.295 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.194 1.194 21 C -0.247 4.247 22 C -0.201 4.201 23 C -0.106 4.106 24 C -0.151 4.151 25 C -0.184 4.184 26 C -0.129 4.129 27 C -0.144 4.144 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.240 0.760 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.176 0.824 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.095 0.905 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 18.431 -19.067 -2.366 26.624 hybrid contribution 1.074 1.516 0.307 1.883 sum 19.505 -17.550 -2.059 26.319 Atomic orbital electron populations 1.21876 0.91997 1.02948 1.03280 1.20906 0.97114 0.92405 0.97900 1.20356 0.80086 0.87016 0.81349 1.90686 1.36972 1.77673 1.36195 1.45864 1.52226 1.11481 1.27238 1.20669 0.98238 0.81484 0.95208 1.21874 0.88135 1.02382 0.93261 1.59854 1.16768 1.37986 1.11103 1.21719 0.96080 0.93101 0.97605 1.19651 0.89024 0.83048 0.84731 1.90566 1.55359 1.58232 1.40666 1.42199 1.11750 1.34020 1.34829 1.19424 0.85477 1.17444 1.21070 0.86268 1.25040 0.96199 0.97051 0.97812 1.69623 1.15124 1.28734 1.38539 0.86681 0.81102 0.80080 0.81626 1.19622 1.20109 1.19410 1.23651 1.00358 0.95555 1.05176 1.23138 1.02994 0.97699 0.96265 1.20437 0.93370 0.99749 0.96998 1.21974 0.95918 0.99644 0.97565 1.21869 0.99353 1.02631 0.94566 1.20459 0.94808 1.01708 0.95964 1.21679 0.95548 1.00971 0.96177 0.91513 0.91354 0.91727 0.76008 0.90976 0.90943 0.82371 0.89345 0.93351 0.79655 0.91580 0.88401 0.88461 0.88181 0.88125 0.90042 0.90263 0.88092 0.88290 0.90905 0.91139 0.90535 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.37 37.15 0.31 -0.91 16 2 C -0.08 -0.74 0.64 -155.45 -0.10 -0.84 16 3 C 0.53 6.31 4.76 -10.98 -0.05 6.26 16 4 O -0.54 -8.38 15.15 5.56 0.08 -8.30 16 5 N -0.72 -7.73 5.33 -60.29 -0.32 -8.05 16 6 C 0.17 1.93 5.68 -4.04 -0.02 1.91 16 7 C 0.04 0.40 1.80 -131.60 -0.24 0.16 16 8 N -0.63 -8.93 6.29 -101.22 -0.64 -9.57 16 9 C 0.05 0.76 6.00 -4.97 -0.03 0.73 16 10 C 0.45 10.03 7.82 -10.98 -0.09 9.94 16 11 O -0.57 -14.85 15.78 5.54 0.09 -14.76 16 12 N -0.59 -13.96 5.09 -10.96 -0.06 -14.01 16 13 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 14 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 15 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 16 N -0.88 -25.69 13.96 55.50 0.77 -24.91 16 17 Si 0.88 19.44 27.74 -169.99 -4.71 14.72 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.27 -5.46 6.52 56.52 0.37 -5.10 16 21 C -0.21 -1.93 10.07 -26.69 -0.27 -2.20 16 22 C -0.16 -1.42 9.97 -26.69 -0.27 -1.68 16 23 C -0.07 -0.64 4.58 -27.94 -0.13 -0.77 16 24 C -0.13 -1.30 8.91 -35.67 -0.32 -1.62 16 25 C -0.17 -1.55 9.58 -35.89 -0.34 -1.90 16 26 C -0.09 -0.75 5.60 -28.17 -0.16 -0.91 16 27 C -0.11 -0.78 4.85 -26.52 -0.13 -0.91 16 28 H 0.07 0.56 7.49 -51.93 -0.39 0.18 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.40 3.91 7.57 -40.82 -0.31 3.60 16 32 H 0.07 0.81 7.94 -51.93 -0.41 0.39 16 33 H 0.07 0.97 6.52 -51.93 -0.34 0.63 16 34 H 0.36 5.25 8.31 -39.29 -0.33 4.93 16 35 H 0.09 1.36 6.63 -51.93 -0.34 1.02 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.08 0.88 7.79 -51.93 -0.40 0.48 16 44 H 0.08 0.60 8.11 -51.93 -0.42 0.17 16 45 H 0.10 0.92 8.06 -52.48 -0.42 0.49 16 46 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.65 7.41 -51.93 -0.38 0.26 16 49 H 0.08 0.50 8.13 -51.93 -0.42 0.08 16 50 H 0.07 0.46 7.94 -51.93 -0.41 0.05 16 LS Contribution 400.80 15.07 6.04 6.04 Total: -1.00 -33.58 400.80 -9.00 -42.57 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -8.18 Total: 16.71 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.07 Total: -0.45 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.24 Total: -56.54 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.17 Total: -23.06 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.58 -9.00 -42.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483737136.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.330 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds