Wall clock time and date at job start Tue Mar 31 2020 18:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.64058 * 2 1 4 4 O 1.21279 * 120.00017 * 121.56034 * 3 2 1 5 5 N 1.34776 * 119.99656 * 301.56465 * 3 2 1 6 6 C 1.46502 * 119.99737 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.47058 * 174.99402 * 6 5 3 8 8 N 1.46890 * 115.55082 * 80.18974 * 7 6 5 9 9 C 1.46901 * 110.99982 * 65.12162 * 8 7 6 10 10 C 1.50703 * 109.47126 * 180.02562 * 9 8 7 11 11 O 1.21298 * 119.99706 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00243 * 179.97438 * 10 9 8 13 13 C 1.37101 * 120.00098 * 179.97438 * 12 10 9 14 14 H 1.07994 * 119.99709 * 0.02562 * 13 12 10 15 15 C 1.38952 * 119.99899 * 179.97438 * 13 12 10 16 16 N 1.31412 * 119.99586 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99782 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47291 * 89.99986 * 17 15 13 19 19 H 1.48504 * 109.46819 * 209.99640 * 17 15 13 20 20 H 1.48496 * 109.47159 * 329.99340 * 17 15 13 21 21 C 1.53005 * 117.49596 * 225.86017 * 7 6 5 22 22 C 1.53002 * 117.49507 * 294.51712 * 7 6 5 23 23 C 1.53022 * 109.64144 * 120.41828 * 2 1 3 24 24 C 1.50551 * 109.88760 * 169.16124 * 23 2 1 25 25 C 1.29439 * 124.16092 * 343.00176 * 24 23 2 26 26 C 1.50077 * 124.07621 * 0.41088 * 25 24 23 27 27 C 1.53028 * 110.14182 * 342.86929 * 26 25 24 28 28 H 1.08999 * 109.47458 * 59.99792 * 1 2 3 29 29 H 1.09001 * 109.47499 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47197 * 300.00074 * 1 2 3 31 31 H 0.96998 * 120.00382 * 359.97438 * 5 3 2 32 32 H 1.09006 * 109.47250 * 54.99371 * 6 5 3 33 33 H 1.08995 * 109.47419 * 294.99169 * 6 5 3 34 34 H 1.00907 * 111.00287 * 189.07556 * 8 7 6 35 35 H 1.08995 * 109.47074 * 300.03619 * 9 8 7 36 36 H 1.08996 * 109.47405 * 60.04515 * 9 8 7 37 37 H 0.96998 * 119.99908 * 0.02562 * 12 10 9 38 38 H 0.97002 * 119.99415 * 180.02562 * 16 15 13 39 39 H 1.08994 * 117.49641 * 215.00237 * 21 7 6 40 40 H 1.09003 * 117.49901 * 0.02562 * 21 7 6 41 41 H 1.08996 * 117.50231 * 359.97438 * 22 7 6 42 42 H 1.08998 * 117.49409 * 144.97397 * 22 7 6 43 43 H 1.08996 * 109.35956 * 289.53539 * 23 2 1 44 44 H 1.09000 * 109.36096 * 49.12868 * 23 2 1 45 45 H 1.08003 * 117.87836 * 162.91544 * 24 23 2 46 46 H 1.08000 * 117.96748 * 180.43402 * 25 24 23 47 47 H 1.08998 * 109.35582 * 222.66299 * 26 25 24 48 48 H 1.08996 * 109.24640 * 103.00406 * 26 25 24 49 49 H 1.08991 * 109.64354 * 289.74676 * 27 26 25 50 50 H 1.09005 * 109.81397 * 169.22357 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0365 1.4194 0.0000 4 8 2.7581 1.8057 0.8950 5 7 1.6875 2.2593 -0.9945 6 6 2.1795 3.6393 -0.9943 7 6 1.7435 4.3364 -2.2846 8 7 0.3595 4.8280 -2.3027 9 6 0.1672 5.8962 -1.3127 10 6 -1.2613 6.3738 -1.3600 11 8 -2.0426 5.8732 -2.1413 12 7 -1.6711 7.3564 -0.5336 13 6 -2.9706 7.7912 -0.5770 14 1 -3.6659 7.3461 -1.2732 15 6 -3.3932 8.8039 0.2754 16 7 -4.6389 9.2203 0.2341 17 14 -2.1905 9.5733 1.4800 18 1 -1.5205 10.7327 0.8381 19 1 -2.9240 10.0315 2.6872 20 1 -1.1711 8.5673 1.8723 21 6 2.7949 5.1578 -3.0337 22 6 2.3255 3.8154 -3.6003 23 6 2.0443 -0.7297 1.2428 24 6 3.5260 -0.9668 1.1209 25 6 4.1844 -0.8955 0.0088 26 6 3.5643 -0.5574 -1.3154 27 6 2.0455 -0.7315 -1.2457 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.1107 1.9503 -1.7105 32 1 3.2678 3.6371 -0.9323 33 1 1.7678 4.1716 -0.1369 34 1 0.0984 5.1397 -3.2263 35 1 0.3896 5.5129 -0.3169 36 1 0.8354 6.7268 -1.5400 37 1 -1.0465 7.7564 0.0914 38 1 -4.9338 9.9276 0.8289 39 1 2.4595 6.0629 -3.5398 40 1 3.7972 5.2012 -2.6074 41 1 3.0192 2.9764 -3.5465 42 1 1.6812 3.8371 -4.4791 43 1 1.8419 -0.1248 2.1266 44 1 1.5320 -1.6871 1.3376 45 1 4.0740 -1.2106 2.0191 46 1 5.2461 -1.0919 0.0353 47 1 3.9688 -1.2173 -2.0828 48 1 3.7982 0.4767 -1.5681 49 1 1.8010 -1.7913 -1.1758 50 1 1.5837 -0.3070 -2.1372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483737136.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:13 Heat of formation + Delta-G solvation = -59.370532 kcal Electronic energy + Delta-G solvation = -29586.469166 eV Core-core repulsion = 25613.274027 eV Total energy + Delta-G solvation = -3973.195139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.71430 -40.51787 -39.47497 -38.12984 -36.07742 -35.29428 -34.04537 -33.75755 -33.62949 -31.65585 -28.49525 -28.19892 -27.48414 -25.68882 -24.06893 -23.94006 -23.22737 -21.32455 -20.99193 -20.59244 -20.29116 -19.08752 -17.93614 -17.29470 -17.19284 -17.04560 -16.80856 -16.58316 -16.15504 -15.87775 -15.72340 -15.31243 -14.94464 -14.79243 -14.71982 -14.50222 -14.26193 -14.13132 -13.91154 -13.66556 -13.56042 -13.31220 -13.12752 -12.97935 -12.94574 -12.91013 -12.80476 -12.44147 -12.40616 -12.39056 -12.01125 -11.86078 -11.53335 -11.33716 -11.22140 -11.06446 -10.61478 -10.42318 -10.26910 -10.02098 -9.77491 -9.28230 -8.43373 -6.03922 1.29067 1.32675 1.41942 1.49204 1.74881 1.92033 2.14553 2.20519 2.54874 2.96219 3.13244 3.30682 3.58532 3.60779 3.68014 3.75453 3.79403 3.99668 4.11391 4.15813 4.24700 4.38039 4.40410 4.44913 4.46378 4.56876 4.60932 4.67996 4.73488 4.76704 4.78962 4.82965 4.88185 4.93147 4.99995 5.02694 5.13038 5.21742 5.25326 5.27935 5.31757 5.49761 5.51548 5.78516 5.86573 5.98468 6.12234 6.31231 6.56781 6.65226 6.85477 7.33962 7.37026 7.92288 8.74075 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.002651 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.758585 B =10558.379391 C =11265.632496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.077 4.077 3 C 0.522 3.478 4 O -0.579 6.579 5 N -0.709 5.709 6 C 0.171 3.829 7 C 0.024 3.976 8 N -0.638 5.638 9 C 0.063 3.937 10 C 0.451 3.549 11 O -0.610 6.610 12 N -0.591 5.591 13 C -0.327 4.327 14 H 0.058 0.942 15 C -0.013 4.013 16 N -0.932 5.932 17 Si 0.961 3.039 18 H -0.255 1.255 19 H -0.275 1.275 20 H -0.236 1.236 21 C -0.197 4.197 22 C -0.145 4.145 23 C -0.069 4.069 24 C -0.150 4.150 25 C -0.171 4.171 26 C -0.093 4.093 27 C -0.102 4.102 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.411 0.589 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.352 0.648 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.388 0.612 38 H 0.279 0.721 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.059 0.941 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.092 0.908 48 H 0.060 0.940 49 H 0.091 0.909 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.854 -19.423 -3.162 29.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 C 0.310 3.690 4 O -0.459 6.459 5 N -0.360 5.360 6 C 0.047 3.953 7 C -0.068 4.068 8 N -0.269 5.269 9 C -0.069 4.069 10 C 0.239 3.761 11 O -0.495 6.495 12 N -0.233 5.233 13 C -0.457 4.457 14 H 0.076 0.924 15 C -0.212 4.212 16 N -0.573 5.573 17 Si 0.781 3.219 18 H -0.179 1.179 19 H -0.200 1.200 20 H -0.160 1.160 21 C -0.238 4.238 22 C -0.182 4.182 23 C -0.106 4.106 24 C -0.168 4.168 25 C -0.189 4.189 26 C -0.130 4.130 27 C -0.139 4.139 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.248 0.752 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.172 0.828 35 H 0.119 0.881 36 H 0.095 0.905 37 H 0.224 0.776 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.135 0.865 42 H 0.122 0.878 43 H 0.078 0.922 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.122 0.878 47 H 0.110 0.890 48 H 0.078 0.922 49 H 0.110 0.890 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 21.411 -19.825 -2.562 29.292 hybrid contribution 0.115 1.668 0.259 1.692 sum 21.526 -18.157 -2.304 28.255 Atomic orbital electron populations 1.21878 0.91454 1.04135 1.02430 1.20924 0.97382 0.90791 0.98918 1.20880 0.79345 0.88080 0.80715 1.90663 1.38929 1.78593 1.37696 1.45848 1.51832 1.11214 1.27089 1.20597 0.98374 0.81579 0.94768 1.21759 0.86825 1.04041 0.94185 1.59800 1.19519 1.37221 1.10383 1.21562 0.91487 0.94714 0.99123 1.20852 0.91238 0.81358 0.82690 1.90543 1.57510 1.59283 1.42126 1.42049 1.10393 1.34851 1.35987 1.19008 0.86896 1.18604 1.21147 0.92373 1.26065 0.98475 0.96937 0.99691 1.69796 1.17885 1.29645 1.39959 0.85416 0.78690 0.79775 0.77999 1.17934 1.19983 1.15957 1.23691 1.00151 0.95781 1.04139 1.23225 1.02327 0.97969 0.94725 1.20447 0.93570 1.00329 0.96276 1.22096 0.96272 1.00473 0.97929 1.22096 0.99743 1.01927 0.95105 1.20499 0.95310 1.01463 0.95698 1.21711 0.95035 1.01675 0.95521 0.91396 0.89192 0.93513 0.75229 0.90447 0.92994 0.82783 0.88053 0.90468 0.77637 0.91116 0.88491 0.87167 0.86546 0.87772 0.92199 0.88273 0.88183 0.87823 0.88982 0.92167 0.89007 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.37 71.98 0.60 -1.62 16 2 C -0.08 -1.32 0.64 -52.79 -0.03 -1.35 16 3 C 0.52 12.11 4.76 87.66 0.42 12.52 16 4 O -0.58 -18.00 15.15 -3.03 -0.05 -18.05 16 5 N -0.71 -14.27 5.33 -463.04 -2.47 -16.74 16 6 C 0.17 3.64 5.68 86.38 0.49 4.13 16 7 C 0.02 0.47 1.80 3.53 0.01 0.48 16 8 N -0.64 -17.24 6.29 -474.15 -2.98 -20.23 16 9 C 0.06 1.93 6.00 85.56 0.51 2.44 16 10 C 0.45 20.14 7.82 87.66 0.69 20.83 16 11 O -0.61 -33.05 15.78 -3.09 -0.05 -33.09 16 12 N -0.59 -28.01 5.09 -306.98 -1.56 -29.57 16 13 C -0.33 -19.18 10.16 84.04 0.85 -18.32 16 14 H 0.06 4.04 7.39 -2.91 -0.02 4.01 16 15 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 16 N -0.93 -56.25 13.96 21.66 0.30 -55.95 16 17 Si 0.96 39.29 27.74 68.60 1.90 41.20 16 18 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 20 H -0.24 -8.33 6.52 99.48 0.65 -7.68 16 21 C -0.20 -3.05 10.07 30.62 0.31 -2.74 16 22 C -0.14 -2.06 9.97 30.62 0.31 -1.75 16 23 C -0.07 -1.25 4.58 29.81 0.14 -1.12 16 24 C -0.15 -2.83 8.91 27.19 0.24 -2.59 16 25 C -0.17 -2.95 9.58 27.04 0.26 -2.69 16 26 C -0.09 -1.29 5.60 29.66 0.17 -1.12 16 27 C -0.10 -1.24 4.85 30.73 0.15 -1.09 16 28 H 0.07 1.04 7.49 -2.39 -0.02 1.02 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.41 7.17 7.57 -92.71 -0.70 6.46 16 32 H 0.08 1.58 7.94 -2.38 -0.02 1.56 16 33 H 0.05 1.33 6.52 -2.39 -0.02 1.31 16 34 H 0.35 9.99 8.31 -89.69 -0.75 9.25 16 35 H 0.10 2.90 6.63 -2.39 -0.02 2.89 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.39 15.47 5.76 -92.71 -0.53 14.94 16 38 H 0.28 15.41 8.31 -92.71 -0.77 14.63 16 39 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.11 1.46 8.08 -2.39 -0.02 1.44 16 41 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.06 1.33 7.79 -2.39 -0.02 1.31 16 44 H 0.10 1.34 8.11 -2.39 -0.02 1.32 16 45 H 0.10 1.82 8.06 -2.91 -0.02 1.79 16 46 H 0.10 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.06 0.98 7.41 -2.39 -0.02 0.96 16 49 H 0.09 0.88 8.13 -2.39 -0.02 0.86 16 50 H 0.09 0.82 7.94 -2.38 -0.02 0.80 16 Total: -1.00 -78.32 400.80 -0.41 -78.73 By element: Atomic # 1 Polarization: 49.02 SS G_CDS: -1.08 Total: 47.94 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 5.57 Total: 5.76 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -6.71 Total: -122.49 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -0.09 Total: -51.14 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.90 Total: 41.20 kcal Total: -78.32 -0.41 -78.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483737136.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.359 kcal (2) G-P(sol) polarization free energy of solvation -78.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds