Wall clock time and date at job start Tue Mar 31 2020 19:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 110.29091 * 2 1 4 4 C 1.34783 * 120.00116 * 299.32641 * 3 2 1 5 5 O 1.21281 * 119.99546 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00122 * 180.02562 * 4 3 2 7 7 C 1.53004 * 109.47194 * 180.02562 * 6 4 3 8 8 H 1.09004 * 110.34146 * 304.16754 * 7 6 4 9 9 C 1.51097 * 110.38708 * 66.45144 * 7 6 4 10 10 C 1.30526 * 111.10652 * 135.24949 * 9 7 6 11 11 C 1.51107 * 111.09947 * 0.02562 * 10 9 7 12 12 C 1.54631 * 110.38593 * 181.75701 * 7 6 4 13 13 C 1.54256 * 110.32255 * 237.86790 * 2 1 3 14 14 C 1.54374 * 105.06323 * 241.00563 * 13 2 1 15 15 N 1.48554 * 104.59837 * 336.14760 * 14 13 2 16 16 C 1.46899 * 111.00494 * 159.04218 * 15 14 13 17 17 C 1.50698 * 109.46987 * 69.87153 * 16 15 14 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99773 * 179.72591 * 19 17 16 21 21 H 1.08002 * 119.99671 * 0.27660 * 20 19 17 22 22 C 1.38950 * 120.00030 * 180.27703 * 20 19 17 23 23 N 1.31414 * 119.99926 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99969 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47425 * 90.00231 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00087 * 24 22 20 27 27 H 1.48505 * 109.47256 * 330.00093 * 24 22 20 28 28 C 1.48559 * 104.22099 * 39.48104 * 15 14 13 29 29 H 1.09003 * 109.47787 * 180.67734 * 1 2 3 30 30 H 1.09001 * 109.46952 * 300.67473 * 1 2 3 31 31 H 1.09004 * 109.47288 * 60.66962 * 1 2 3 32 32 H 0.96999 * 120.00347 * 119.32919 * 3 2 1 33 33 H 1.09002 * 109.47244 * 300.00389 * 6 4 3 34 34 H 1.09001 * 109.47019 * 60.00012 * 6 4 3 35 35 H 1.08009 * 124.45101 * 315.27376 * 9 7 6 36 36 H 1.07995 * 124.44957 * 180.02562 * 10 9 7 37 37 H 1.09002 * 110.38430 * 102.37780 * 11 10 9 38 38 H 1.09006 * 110.38329 * 224.74870 * 11 10 9 39 39 H 1.08999 * 111.04352 * 334.58431 * 12 7 6 40 40 H 1.09005 * 111.03544 * 98.52435 * 12 7 6 41 41 H 1.09000 * 110.32317 * 122.10600 * 13 2 1 42 42 H 1.09008 * 110.41050 * 359.94657 * 13 2 1 43 43 H 1.09005 * 110.41164 * 217.36663 * 14 13 2 44 44 H 1.09002 * 110.51152 * 94.97823 * 14 13 2 45 45 H 1.09003 * 109.46477 * 309.87643 * 16 15 14 46 46 H 1.08993 * 109.47002 * 189.87969 * 16 15 14 47 47 H 0.97001 * 120.00485 * 0.02562 * 19 17 16 48 48 H 0.96999 * 119.99863 * 180.02562 * 23 22 20 49 49 H 1.09002 * 110.41155 * 79.29636 * 28 15 14 50 50 H 1.08996 * 110.41389 * 201.73838 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0380 1.3740 0.0000 4 6 1.7355 2.2044 -1.0177 5 8 1.0423 1.8141 -1.9331 6 6 2.2585 3.6176 -1.0179 7 6 1.7721 4.3413 -2.2752 8 1 2.0669 3.7896 -3.1679 9 6 0.2717 4.5148 -2.2354 10 6 -0.0715 5.7222 -2.5934 11 6 1.1430 6.5549 -2.9324 12 6 2.3334 5.7814 -2.3190 13 6 2.0657 -0.7694 -1.2250 14 6 2.8826 -1.9401 -0.6376 15 7 3.2720 -1.4808 0.7205 16 6 3.6118 -2.6194 1.5842 17 6 4.9065 -3.2342 1.1186 18 8 5.4891 -2.7692 0.1617 19 7 5.4176 -4.3000 1.7661 20 6 6.5926 -4.8629 1.3391 21 1 7.1109 -4.4493 0.4866 22 6 7.1165 -5.9653 2.0032 23 7 6.4855 -6.4687 3.0402 24 14 8.7178 -6.7316 1.4219 25 1 9.8582 -6.0828 2.1172 26 1 8.7119 -8.1843 1.7301 27 1 8.8562 -6.5371 -0.0438 28 6 2.0684 -0.7707 1.2246 29 1 -0.3635 -1.0276 0.0121 30 1 -0.3633 0.5243 0.8839 31 1 -0.3634 0.5034 -0.8959 32 1 2.5921 1.6863 0.7323 33 1 1.8933 4.1405 -0.1340 34 1 3.3484 3.6017 -1.0062 35 1 -0.4255 3.7415 -1.9479 36 1 -1.0897 6.0791 -2.6411 37 1 1.2582 6.6358 -4.0133 38 1 1.0620 7.5448 -2.4832 39 1 2.5608 6.1435 -1.3164 40 1 3.2111 5.8399 -2.9628 41 1 2.7066 -0.1246 -1.8263 42 1 1.2397 -1.1485 -1.8268 43 1 3.7688 -2.1274 -1.2441 44 1 2.2698 -2.8393 -0.5736 45 1 2.8172 -3.3638 1.5333 46 1 3.7220 -2.2753 2.6125 47 1 4.9519 -4.6717 2.5316 48 1 6.8514 -7.2380 3.5040 49 1 1.3263 -1.4856 1.5801 50 1 2.3413 -0.0775 2.0202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484030380.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:59 Heat of formation + Delta-G solvation = -50.837405 kcal Electronic energy + Delta-G solvation = -28969.525009 eV Core-core repulsion = 24996.699894 eV Total energy + Delta-G solvation = -3972.825115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.59617 -39.28242 -38.33597 -37.41727 -34.56859 -33.78105 -32.33451 -31.28860 -30.87406 -29.48111 -29.15351 -27.60897 -25.87061 -25.16053 -23.83959 -21.52302 -21.19563 -20.56260 -19.58520 -19.03410 -18.88650 -17.84786 -17.11040 -16.50298 -16.14696 -15.94257 -15.54427 -15.24433 -14.98677 -14.59275 -14.39164 -14.09064 -13.79708 -13.74902 -13.23055 -13.20662 -12.90294 -12.45803 -12.38340 -12.23784 -12.10820 -12.07582 -12.00272 -11.88684 -11.54327 -11.51109 -11.46058 -11.33884 -11.10273 -11.02957 -10.92503 -10.90269 -10.61034 -10.39361 -10.21702 -9.62773 -9.49088 -9.11442 -9.05806 -8.51128 -8.03808 -7.94449 -6.41537 -3.82215 2.10160 2.63513 3.11161 3.17824 3.26408 3.32266 3.90687 4.01740 4.25828 4.30814 4.36713 4.42317 4.60672 4.78388 4.81743 4.97253 5.02342 5.11380 5.15215 5.19921 5.25308 5.29692 5.37811 5.41225 5.42118 5.52409 5.54333 5.57100 5.63844 5.68863 5.70022 5.76559 5.81056 5.84044 5.91678 6.02155 6.03761 6.14607 6.25417 6.29940 6.36868 6.48102 6.59406 6.70926 7.09616 7.17886 7.51668 7.55381 8.06484 8.23692 8.62226 9.18597 9.54810 10.06875 10.76282 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025025 B = 0.001977 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.599592 B =14161.496565 C =14799.195276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.174 3.826 3 N -0.715 5.715 4 C 0.514 3.486 5 O -0.536 6.536 6 C -0.134 4.134 7 C -0.053 4.053 8 H 0.090 0.910 9 C -0.137 4.137 10 C -0.186 4.186 11 C -0.099 4.099 12 C -0.123 4.123 13 C -0.117 4.117 14 C 0.036 3.964 15 N -0.483 5.483 16 C 0.034 3.966 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.028 3.972 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.401 0.599 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.038 0.962 45 H 0.050 0.950 46 H 0.089 0.911 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.057 0.943 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.983 20.987 -3.967 25.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.087 3.913 3 N -0.367 5.367 4 C 0.301 3.699 5 O -0.413 6.413 6 C -0.174 4.174 7 C -0.072 4.072 8 H 0.108 0.892 9 C -0.155 4.155 10 C -0.204 4.204 11 C -0.136 4.136 12 C -0.161 4.161 13 C -0.156 4.156 14 C -0.092 4.092 15 N -0.206 5.206 16 C -0.098 4.098 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.101 4.101 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.236 0.764 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.118 0.882 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.537 21.176 -5.156 25.656 hybrid contribution 0.055 -1.253 0.867 1.524 sum -13.482 19.923 -4.289 24.436 Atomic orbital electron populations 1.22186 0.93786 1.02352 1.03132 1.20969 0.93375 0.81320 0.95591 1.46164 1.53556 1.12044 1.24892 1.20604 0.80203 0.87329 0.81756 1.90665 1.37988 1.77259 1.35377 1.21731 1.02533 0.92881 1.00270 1.20808 0.93294 0.95450 0.97598 0.89194 1.23320 0.96440 0.96800 0.98973 1.23243 0.98626 0.96249 1.02261 1.21335 0.92889 0.98641 1.00731 1.22569 0.97791 0.94296 1.01398 1.22659 0.99449 0.96889 0.96600 1.23213 0.99654 0.95289 0.91044 1.65169 1.30569 1.22895 1.02001 1.22068 0.97342 0.92542 0.97848 1.19679 0.87487 0.83324 0.86466 1.90509 1.62425 1.63623 1.29509 1.41858 1.22437 1.26743 1.29201 1.19693 0.98894 1.10301 1.13840 0.87949 1.25255 0.99701 0.97036 0.96003 1.69613 1.39873 1.24721 1.20196 0.85860 0.81332 0.77903 0.79208 1.20418 1.20957 1.19448 1.23435 0.92563 0.97830 0.96292 0.91855 0.92733 0.90280 0.76437 0.88989 0.88653 0.85695 0.86221 0.90942 0.91460 0.90902 0.90807 0.90652 0.90897 0.88218 0.94355 0.93173 0.89302 0.77532 0.91913 0.92520 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 8.17 37.16 0.30 -1.35 16 2 C 0.17 2.03 1.01 -130.44 -0.13 1.90 16 3 N -0.71 -7.37 5.10 -46.33 -0.24 -7.61 16 4 C 0.51 5.59 6.76 -10.99 -0.07 5.52 16 5 O -0.54 -7.37 11.97 5.56 0.07 -7.31 16 6 C -0.13 -1.07 5.12 -27.88 -0.14 -1.21 16 7 C -0.05 -0.46 2.54 -90.72 -0.23 -0.69 16 8 H 0.09 0.93 8.01 -51.93 -0.42 0.52 16 9 C -0.14 -1.30 9.19 -35.70 -0.33 -1.63 16 10 C -0.19 -1.53 10.78 -35.69 -0.38 -1.92 16 11 C -0.10 -0.69 6.81 -26.82 -0.18 -0.88 16 12 C -0.12 -0.85 6.71 -25.01 -0.17 -1.02 16 13 C -0.12 -1.64 5.48 -25.35 -0.14 -1.78 16 14 C 0.04 0.59 5.80 -2.19 -0.01 0.57 16 15 N -0.48 -7.83 5.06 -231.41 -1.17 -9.00 16 16 C 0.03 0.59 5.30 -4.98 -0.03 0.57 16 17 C 0.45 10.46 7.58 -10.99 -0.08 10.37 16 18 O -0.58 -15.55 14.42 5.55 0.08 -15.47 16 19 N -0.57 -14.28 5.29 -10.96 -0.06 -14.33 16 20 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 24 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 C 0.03 0.33 5.69 -2.18 -0.01 0.32 16 29 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.96 6.31 -51.93 -0.33 0.63 16 32 H 0.40 3.40 8.27 -40.82 -0.34 3.07 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.13 1.33 7.31 -52.48 -0.38 0.94 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.44 7.91 -51.93 -0.41 0.03 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 1.17 7.31 -51.93 -0.38 0.79 16 42 H 0.07 0.98 7.72 -51.92 -0.40 0.58 16 43 H 0.10 1.96 6.91 -51.93 -0.36 1.60 16 44 H 0.04 0.60 7.82 -51.93 -0.41 0.20 16 45 H 0.05 0.81 7.88 -51.93 -0.41 0.40 16 46 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 47 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.06 0.63 7.71 -51.93 -0.40 0.23 16 50 H 0.08 0.88 7.75 -51.93 -0.40 0.48 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -32.31 395.30 -9.78 -42.10 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -8.27 Total: 12.57 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -1.85 Total: 0.82 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.74 Total: -54.72 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.15 Total: -22.78 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.31 -9.78 -42.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484030380.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.742 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds