Wall clock time and date at job start Tue Mar 31 2020 19:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 110.29091 * 2 1 4 4 C 1.34783 * 120.00116 * 299.32641 * 3 2 1 5 5 O 1.21281 * 119.99546 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00122 * 180.02562 * 4 3 2 7 7 C 1.53004 * 109.47194 * 180.02562 * 6 4 3 8 8 H 1.09004 * 110.34146 * 304.16754 * 7 6 4 9 9 C 1.51097 * 110.38708 * 66.45144 * 7 6 4 10 10 C 1.30526 * 111.10652 * 135.24949 * 9 7 6 11 11 C 1.51107 * 111.09947 * 0.02562 * 10 9 7 12 12 C 1.54631 * 110.38593 * 181.75701 * 7 6 4 13 13 C 1.54256 * 110.32255 * 237.86790 * 2 1 3 14 14 C 1.54374 * 105.06323 * 241.00563 * 13 2 1 15 15 N 1.48554 * 104.59837 * 336.14760 * 14 13 2 16 16 C 1.46899 * 111.00494 * 159.04218 * 15 14 13 17 17 C 1.50698 * 109.46987 * 69.87153 * 16 15 14 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99773 * 179.72591 * 19 17 16 21 21 H 1.08002 * 119.99671 * 0.27660 * 20 19 17 22 22 C 1.38950 * 120.00030 * 180.27703 * 20 19 17 23 23 N 1.31414 * 119.99926 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99969 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47425 * 90.00231 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00087 * 24 22 20 27 27 H 1.48505 * 109.47256 * 330.00093 * 24 22 20 28 28 C 1.48559 * 104.22099 * 39.48104 * 15 14 13 29 29 H 1.09003 * 109.47787 * 180.67734 * 1 2 3 30 30 H 1.09001 * 109.46952 * 300.67473 * 1 2 3 31 31 H 1.09004 * 109.47288 * 60.66962 * 1 2 3 32 32 H 0.96999 * 120.00347 * 119.32919 * 3 2 1 33 33 H 1.09002 * 109.47244 * 300.00389 * 6 4 3 34 34 H 1.09001 * 109.47019 * 60.00012 * 6 4 3 35 35 H 1.08009 * 124.45101 * 315.27376 * 9 7 6 36 36 H 1.07995 * 124.44957 * 180.02562 * 10 9 7 37 37 H 1.09002 * 110.38430 * 102.37780 * 11 10 9 38 38 H 1.09006 * 110.38329 * 224.74870 * 11 10 9 39 39 H 1.08999 * 111.04352 * 334.58431 * 12 7 6 40 40 H 1.09005 * 111.03544 * 98.52435 * 12 7 6 41 41 H 1.09000 * 110.32317 * 122.10600 * 13 2 1 42 42 H 1.09008 * 110.41050 * 359.94657 * 13 2 1 43 43 H 1.09005 * 110.41164 * 217.36663 * 14 13 2 44 44 H 1.09002 * 110.51152 * 94.97823 * 14 13 2 45 45 H 1.09003 * 109.46477 * 309.87643 * 16 15 14 46 46 H 1.08993 * 109.47002 * 189.87969 * 16 15 14 47 47 H 0.97001 * 120.00485 * 0.02562 * 19 17 16 48 48 H 0.96999 * 119.99863 * 180.02562 * 23 22 20 49 49 H 1.09002 * 110.41155 * 79.29636 * 28 15 14 50 50 H 1.08996 * 110.41389 * 201.73838 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0380 1.3740 0.0000 4 6 1.7355 2.2044 -1.0177 5 8 1.0423 1.8141 -1.9331 6 6 2.2585 3.6176 -1.0179 7 6 1.7721 4.3413 -2.2752 8 1 2.0669 3.7896 -3.1679 9 6 0.2717 4.5148 -2.2354 10 6 -0.0715 5.7222 -2.5934 11 6 1.1430 6.5549 -2.9324 12 6 2.3334 5.7814 -2.3190 13 6 2.0657 -0.7694 -1.2250 14 6 2.8826 -1.9401 -0.6376 15 7 3.2720 -1.4808 0.7205 16 6 3.6118 -2.6194 1.5842 17 6 4.9065 -3.2342 1.1186 18 8 5.4891 -2.7692 0.1617 19 7 5.4176 -4.3000 1.7661 20 6 6.5926 -4.8629 1.3391 21 1 7.1109 -4.4493 0.4866 22 6 7.1165 -5.9653 2.0032 23 7 6.4855 -6.4687 3.0402 24 14 8.7178 -6.7316 1.4219 25 1 9.8582 -6.0828 2.1172 26 1 8.7119 -8.1843 1.7301 27 1 8.8562 -6.5371 -0.0438 28 6 2.0684 -0.7707 1.2246 29 1 -0.3635 -1.0276 0.0121 30 1 -0.3633 0.5243 0.8839 31 1 -0.3634 0.5034 -0.8959 32 1 2.5921 1.6863 0.7323 33 1 1.8933 4.1405 -0.1340 34 1 3.3484 3.6017 -1.0062 35 1 -0.4255 3.7415 -1.9479 36 1 -1.0897 6.0791 -2.6411 37 1 1.2582 6.6358 -4.0133 38 1 1.0620 7.5448 -2.4832 39 1 2.5608 6.1435 -1.3164 40 1 3.2111 5.8399 -2.9628 41 1 2.7066 -0.1246 -1.8263 42 1 1.2397 -1.1485 -1.8268 43 1 3.7688 -2.1274 -1.2441 44 1 2.2698 -2.8393 -0.5736 45 1 2.8172 -3.3638 1.5333 46 1 3.7220 -2.2753 2.6125 47 1 4.9519 -4.6717 2.5316 48 1 6.8514 -7.2380 3.5040 49 1 1.3263 -1.4856 1.5801 50 1 2.3413 -0.0775 2.0202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484030380.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:58 Heat of formation + Delta-G solvation = -73.692164 kcal Electronic energy + Delta-G solvation = -28970.516065 eV Core-core repulsion = 24996.699894 eV Total energy + Delta-G solvation = -3973.816172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.54262 -40.42340 -39.59887 -38.61048 -36.06028 -35.40084 -33.36372 -33.11469 -31.84174 -30.55499 -29.75093 -28.95792 -26.97223 -26.36656 -25.27187 -22.73907 -22.07434 -21.21708 -21.03924 -20.36455 -19.83227 -19.57359 -17.98926 -17.68913 -17.46072 -16.82232 -16.68430 -16.35897 -16.25870 -16.03597 -15.67287 -15.47596 -15.36053 -14.78560 -14.51506 -14.15430 -14.03644 -13.75421 -13.52141 -13.32021 -13.20331 -13.02064 -12.92731 -12.86563 -12.73008 -12.67441 -12.64530 -12.41743 -12.20548 -12.12989 -12.06805 -12.01134 -11.90189 -11.80707 -11.62987 -11.47226 -10.53166 -10.31110 -10.00793 -9.96129 -9.75773 -9.38560 -8.46323 -5.94594 1.37490 1.41165 1.42806 1.53593 1.79931 2.06824 2.27651 2.30629 2.80256 3.20295 3.33489 3.46400 3.69410 3.75248 3.78131 4.00666 4.02456 4.09214 4.19411 4.28593 4.39886 4.42181 4.45562 4.53353 4.53654 4.60206 4.64566 4.68685 4.70126 4.79040 4.82284 4.82593 4.88653 5.00220 5.03503 5.11055 5.13616 5.14879 5.29680 5.31681 5.41156 5.44217 5.65117 5.72901 5.83099 5.89658 6.03936 6.07754 6.61655 6.71795 7.13993 7.42205 7.57642 8.14136 8.71056 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025025 B = 0.001977 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.599592 B =14161.496565 C =14799.195276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.178 3.822 3 N -0.710 5.710 4 C 0.509 3.491 5 O -0.569 6.569 6 C -0.127 4.127 7 C -0.054 4.054 8 H 0.065 0.935 9 C -0.159 4.159 10 C -0.179 4.179 11 C -0.101 4.101 12 C -0.118 4.118 13 C -0.108 4.108 14 C 0.039 3.961 15 N -0.502 5.502 16 C 0.047 3.953 17 C 0.441 3.559 18 O -0.618 6.618 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.275 1.275 28 C 0.033 3.967 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.412 0.588 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.117 0.883 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.076 0.924 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.608 22.294 -2.315 26.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.091 3.909 3 N -0.363 5.363 4 C 0.297 3.703 5 O -0.448 6.448 6 C -0.167 4.167 7 C -0.073 4.073 8 H 0.083 0.917 9 C -0.177 4.177 10 C -0.196 4.196 11 C -0.138 4.138 12 C -0.155 4.155 13 C -0.148 4.148 14 C -0.089 4.089 15 N -0.226 5.226 16 C -0.085 4.085 17 C 0.228 3.772 18 O -0.503 6.503 19 N -0.212 5.212 20 C -0.461 4.461 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.200 1.200 28 C -0.095 4.095 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.249 0.751 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.147 0.853 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.089 0.911 46 H 0.135 0.865 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.094 0.906 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.175 22.496 -3.465 26.815 hybrid contribution 0.203 -1.619 0.295 1.658 sum -13.973 20.877 -3.170 25.321 Atomic orbital electron populations 1.22100 0.92555 1.02903 1.03072 1.20892 0.94155 0.81746 0.94108 1.46130 1.53522 1.11415 1.25211 1.21149 0.79568 0.88375 0.81158 1.90656 1.39512 1.78052 1.36612 1.21748 1.03164 0.90909 1.00839 1.20784 0.93048 0.96527 0.96909 0.91722 1.23261 0.96707 0.96967 1.00791 1.23502 0.99674 0.95960 1.00504 1.21396 0.92202 0.99145 1.01032 1.22577 0.97854 0.92694 1.02414 1.22545 0.98736 0.96011 0.97468 1.23042 0.98095 0.96535 0.91230 1.65092 1.33346 1.22451 1.01699 1.21944 0.94199 0.93366 0.98978 1.20789 0.88870 0.82235 0.85258 1.90490 1.64131 1.64537 1.31178 1.41921 1.22145 1.27496 1.29686 1.19626 1.00543 1.11764 1.14183 0.90541 1.26004 1.02550 0.96827 0.95880 1.69667 1.40943 1.24955 1.20512 0.84952 0.77607 0.77588 0.78337 1.19601 1.19520 1.20005 1.23533 0.91226 0.98080 0.96645 0.91060 0.90950 0.92085 0.75133 0.86752 0.87332 0.87499 0.85297 0.90746 0.89880 0.89445 0.90182 0.92862 0.90648 0.92580 0.93840 0.91069 0.86545 0.76983 0.91337 0.90584 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.17 71.98 0.59 -2.27 16 2 C 0.18 3.88 1.01 4.50 0.00 3.88 16 3 N -0.71 -13.61 5.10 -418.89 -2.13 -15.75 16 4 C 0.51 10.81 6.76 87.65 0.59 11.41 16 5 O -0.57 -16.04 11.97 -3.03 -0.04 -16.07 16 6 C -0.13 -1.86 5.12 29.85 0.15 -1.70 16 7 C -0.05 -0.92 2.54 -10.86 -0.03 -0.95 16 8 H 0.06 1.40 8.01 -2.39 -0.02 1.38 16 9 C -0.16 -2.99 9.19 26.26 0.24 -2.74 16 10 C -0.18 -2.75 10.78 26.26 0.28 -2.47 16 11 C -0.10 -1.23 6.81 30.54 0.21 -1.02 16 12 C -0.12 -1.41 6.71 31.71 0.21 -1.20 16 13 C -0.11 -3.07 5.48 31.49 0.17 -2.90 16 14 C 0.04 1.30 5.80 86.45 0.50 1.81 16 15 N -0.50 -15.68 5.06 -886.06 -4.48 -20.16 16 16 C 0.05 1.56 5.30 85.56 0.45 2.01 16 17 C 0.44 20.96 7.58 87.66 0.66 21.62 16 18 O -0.62 -34.47 14.42 -3.07 -0.04 -34.52 16 19 N -0.57 -29.42 5.29 -306.98 -1.62 -31.05 16 20 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 23 N -0.92 -49.48 13.05 21.66 0.28 -49.20 16 24 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 28 C 0.03 0.69 5.69 86.45 0.49 1.18 16 29 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.44 6.31 -2.38 -0.02 1.43 16 32 H 0.41 6.02 8.27 -92.71 -0.77 5.26 16 33 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.11 2.37 7.31 -2.91 -0.02 2.34 16 36 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.09 0.81 7.91 -2.39 -0.02 0.79 16 40 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.05 1.73 7.31 -2.39 -0.02 1.71 16 42 H 0.07 2.06 7.72 -2.38 -0.02 2.04 16 43 H 0.06 2.35 6.91 -2.38 -0.02 2.33 16 44 H 0.04 1.37 7.82 -2.39 -0.02 1.35 16 45 H 0.07 2.11 7.88 -2.39 -0.02 2.10 16 46 H 0.12 3.29 8.13 -2.39 -0.02 3.27 16 47 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 48 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 49 H 0.08 1.38 7.71 -2.39 -0.02 1.36 16 50 H 0.11 1.81 7.75 -2.39 -0.02 1.79 16 Total: -1.00 -72.65 395.30 -0.74 -73.39 By element: Atomic # 1 Polarization: 40.37 SS G_CDS: -0.55 Total: 39.82 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 5.82 Total: 8.34 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -7.96 Total: -116.15 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -0.08 Total: -50.59 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -72.65 -0.74 -73.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484030380.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.299 kcal (2) G-P(sol) polarization free energy of solvation -72.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds