Wall clock time and date at job start Tue Mar 31 2020 19:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 110.37060 * 2 1 4 4 C 1.34773 * 120.00009 * 60.72475 * 3 2 1 5 5 O 1.21278 * 120.00298 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99920 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47541 * 180.02562 * 6 4 3 8 8 H 1.08997 * 110.34352 * 54.29380 * 7 6 4 9 9 C 1.51104 * 110.38418 * 292.01294 * 7 6 4 10 10 C 1.30530 * 111.10519 * 224.74560 * 9 7 6 11 11 C 1.51104 * 111.10057 * 0.02562 * 10 9 7 12 12 C 1.54629 * 110.39100 * 176.58761 * 7 6 4 13 13 C 1.54261 * 110.32457 * 122.18074 * 2 1 3 14 14 C 1.54381 * 105.06236 * 118.89140 * 13 2 1 15 15 N 1.48561 * 104.59057 * 23.85921 * 14 13 2 16 16 C 1.46904 * 110.99492 * 200.95914 * 15 14 13 17 17 C 1.50707 * 109.47039 * 176.46911 * 16 15 14 18 18 O 1.21292 * 119.99571 * 6.03338 * 17 16 15 19 19 N 1.34777 * 119.99963 * 186.03577 * 17 16 15 20 20 C 1.37091 * 120.00019 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00013 * 359.72020 * 20 19 17 22 22 C 1.38954 * 120.00102 * 179.97438 * 20 19 17 23 23 N 1.31401 * 120.00024 * 359.72385 * 22 20 19 24 24 Si 1.86802 * 120.00015 * 179.72429 * 22 20 19 25 25 H 1.48504 * 109.47127 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47182 * 119.99983 * 24 22 20 27 27 H 1.48499 * 109.47190 * 240.00237 * 24 22 20 28 28 C 1.48564 * 104.21931 * 320.50982 * 15 14 13 29 29 H 1.09001 * 109.46909 * 299.27243 * 1 2 3 30 30 H 1.08999 * 109.47034 * 59.27369 * 1 2 3 31 31 H 1.09005 * 109.47275 * 179.27612 * 1 2 3 32 32 H 0.97006 * 119.99632 * 240.73450 * 3 2 1 33 33 H 1.09002 * 109.47242 * 300.00169 * 6 4 3 34 34 H 1.09007 * 109.47417 * 59.99968 * 6 4 3 35 35 H 1.07997 * 124.44841 * 44.76489 * 9 7 6 36 36 H 1.08000 * 124.45089 * 180.02562 * 10 9 7 37 37 H 1.09002 * 110.38996 * 135.24725 * 11 10 9 38 38 H 1.09004 * 110.38021 * 257.62325 * 11 10 9 39 39 H 1.09002 * 111.03583 * 261.47788 * 12 7 6 40 40 H 1.09003 * 111.03882 * 25.41017 * 12 7 6 41 41 H 1.09002 * 110.32138 * 359.97438 * 13 2 1 42 42 H 1.08994 * 110.32297 * 237.79423 * 13 2 1 43 43 H 1.08994 * 110.41503 * 265.07477 * 14 13 2 44 44 H 1.09002 * 110.40903 * 142.63115 * 14 13 2 45 45 H 1.09000 * 109.47318 * 56.47190 * 16 15 14 46 46 H 1.08998 * 109.47353 * 296.46559 * 16 15 14 47 47 H 0.96994 * 119.99831 * 359.97438 * 19 17 16 48 48 H 0.97000 * 120.00128 * 180.02562 * 23 22 20 49 49 H 1.09004 * 110.40573 * 158.26542 * 28 15 14 50 50 H 1.09005 * 110.41104 * 280.70781 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0399 1.3733 0.0000 4 6 1.7394 2.2037 1.0181 5 8 1.0473 1.8140 1.9345 6 6 2.2635 3.6167 1.0178 7 6 1.7805 4.3402 2.2764 8 1 2.0532 3.7742 3.1671 9 6 0.2848 4.5483 2.2225 10 6 -0.0346 5.7600 2.5879 11 6 1.1949 6.5622 2.9458 12 6 2.3762 5.7657 2.3405 13 6 2.0658 -0.7704 1.2243 14 6 2.8806 -1.9423 0.6359 15 7 3.2693 -1.4829 -0.7224 16 6 3.6067 -2.6218 -1.5867 17 6 3.9111 -2.1249 -2.9765 18 8 3.9602 -0.9332 -3.1972 19 7 4.1288 -3.0046 -3.9741 20 6 4.4062 -2.5525 -5.2383 21 1 4.4459 -1.4915 -5.4358 22 6 4.6312 -3.4595 -6.2667 23 7 4.5833 -4.7505 -6.0264 24 14 5.0016 -2.8435 -7.9909 25 1 4.9977 -1.3585 -7.9975 26 1 6.3356 -3.3374 -8.4171 27 1 3.9652 -3.3448 -8.9290 28 6 2.0661 -0.7711 -1.2252 29 1 -0.3633 0.5025 0.8965 30 1 -0.3633 0.5251 -0.8834 31 1 -0.3634 -1.0276 -0.0130 32 1 2.5938 1.6850 -0.7329 33 1 3.3534 3.6000 1.0045 34 1 1.8974 4.1399 0.1344 35 1 -0.4265 3.7935 1.9216 36 1 -1.0449 6.1394 2.6291 37 1 1.1407 7.5574 2.5046 38 1 1.3014 6.6311 4.0284 39 1 3.2476 5.7965 2.9947 40 1 2.6241 6.1314 1.3440 41 1 1.2387 -1.1482 1.8255 42 1 2.7081 -0.1267 1.8252 43 1 2.2647 -2.8393 0.5721 44 1 3.7670 -2.1309 1.2415 45 1 2.7638 -3.3118 -1.6241 46 1 4.4799 -3.1363 -1.1855 47 1 4.0899 -3.9575 -3.7975 48 1 4.7407 -5.3836 -6.7442 49 1 2.3394 -0.0780 -2.0209 50 1 1.3228 -1.4850 -1.5803 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484030382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:07 Heat of formation + Delta-G solvation = -51.726058 kcal Electronic energy + Delta-G solvation = -29204.221033 eV Core-core repulsion = 25231.357383 eV Total energy + Delta-G solvation = -3972.863650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.52308 -39.26605 -38.32478 -37.37799 -34.51254 -33.85860 -32.26180 -31.30016 -30.84304 -29.47859 -29.10857 -27.40733 -25.83381 -25.25065 -23.90028 -21.40850 -21.17575 -20.50982 -19.34888 -19.18238 -18.82917 -17.88557 -17.04602 -16.54665 -16.06005 -15.70266 -15.52875 -15.23563 -14.97130 -14.83766 -14.48259 -13.97125 -13.79969 -13.58993 -13.18035 -13.14545 -12.86714 -12.38884 -12.35327 -12.15220 -12.06999 -12.02760 -11.98615 -11.89758 -11.57858 -11.47912 -11.43130 -11.26785 -11.21888 -10.98376 -10.91807 -10.79391 -10.69459 -10.37379 -10.26225 -9.54960 -9.52989 -9.06818 -8.96574 -8.49456 -8.08787 -7.97747 -6.45419 -3.86293 2.14376 2.71275 3.13310 3.23464 3.24278 3.30902 3.86234 4.03001 4.24544 4.37184 4.40842 4.53854 4.66926 4.74357 4.88047 5.03248 5.04873 5.18866 5.20828 5.23805 5.26985 5.29983 5.33914 5.45868 5.47029 5.58158 5.64136 5.70281 5.71988 5.74017 5.75849 5.81028 5.83714 5.95721 5.96289 6.01756 6.07587 6.14151 6.22993 6.24316 6.38571 6.41186 6.69926 6.75079 7.07866 7.18783 7.51642 7.64816 8.02295 8.32694 8.57351 9.14116 9.50331 10.01427 10.72297 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.002205 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.117739 B =12695.856538 C =13599.120786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 N -0.712 5.712 4 C 0.514 3.486 5 O -0.541 6.541 6 C -0.135 4.135 7 C -0.052 4.052 8 H 0.089 0.911 9 C -0.137 4.137 10 C -0.186 4.186 11 C -0.099 4.099 12 C -0.123 4.123 13 C -0.116 4.116 14 C 0.026 3.974 15 N -0.484 5.484 16 C 0.033 3.967 17 C 0.443 3.557 18 O -0.581 6.581 19 N -0.563 5.563 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.035 3.965 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.405 0.595 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.080 0.920 45 H 0.049 0.951 46 H 0.092 0.908 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.109 0.891 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.818 13.526 16.296 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.084 3.916 3 N -0.364 5.364 4 C 0.301 3.699 5 O -0.419 6.419 6 C -0.175 4.175 7 C -0.070 4.070 8 H 0.107 0.893 9 C -0.155 4.155 10 C -0.204 4.204 11 C -0.136 4.136 12 C -0.161 4.161 13 C -0.154 4.154 14 C -0.102 4.102 15 N -0.208 5.208 16 C -0.098 4.098 17 C 0.228 3.772 18 O -0.465 6.465 19 N -0.199 5.199 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.093 4.093 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.241 0.759 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.061 0.939 44 H 0.098 0.902 45 H 0.067 0.933 46 H 0.110 0.890 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.127 0.873 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.752 14.214 16.655 22.914 hybrid contribution -0.245 -1.061 -1.281 1.681 sum -6.997 13.154 15.374 21.408 Atomic orbital electron populations 1.22178 0.93922 1.02252 1.03138 1.21016 0.93404 0.81545 0.95589 1.46217 1.53305 1.12064 1.24775 1.20601 0.80194 0.87317 0.81824 1.90646 1.38286 1.77345 1.35627 1.21739 1.02490 0.93014 1.00284 1.20798 0.93183 0.95522 0.97547 0.89279 1.23311 0.96571 0.96720 0.98888 1.23236 0.98591 0.96311 1.02256 1.21354 0.92836 0.98741 1.00638 1.22599 0.97661 0.94377 1.01458 1.22611 0.99446 0.96534 0.96855 1.23233 0.98941 0.96509 0.91497 1.65204 1.32891 1.21804 1.00896 1.22093 1.01274 0.92560 0.93899 1.19697 0.84728 0.87167 0.85578 1.90469 1.56791 1.15840 1.83435 1.41876 1.61569 1.08447 1.08049 1.19734 1.44537 0.94592 0.83929 0.87849 1.25274 0.97453 0.94950 1.00321 1.69614 1.49743 1.00830 1.34008 0.85803 0.77914 0.79109 0.81530 1.19221 1.20727 1.20775 1.23473 0.91039 0.98312 0.96440 0.90435 0.92549 0.91989 0.75922 0.88713 0.88874 0.85744 0.86214 0.91439 0.91022 0.90851 0.90852 0.90803 0.90712 0.93916 0.90151 0.93344 0.89027 0.77479 0.91892 0.87299 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 8.17 37.16 0.30 -1.62 16 2 C 0.17 2.25 1.01 -130.44 -0.13 2.12 16 3 N -0.71 -8.66 5.10 -46.34 -0.24 -8.90 16 4 C 0.51 6.08 6.77 -10.99 -0.07 6.00 16 5 O -0.54 -7.68 12.09 5.56 0.07 -7.61 16 6 C -0.14 -1.22 5.10 -27.88 -0.14 -1.36 16 7 C -0.05 -0.48 2.53 -90.72 -0.23 -0.71 16 8 H 0.09 0.94 7.96 -51.93 -0.41 0.53 16 9 C -0.14 -1.38 9.23 -35.70 -0.33 -1.71 16 10 C -0.19 -1.64 10.78 -35.70 -0.38 -2.02 16 11 C -0.10 -0.74 6.81 -26.74 -0.18 -0.92 16 12 C -0.12 -0.91 6.72 -24.93 -0.17 -1.08 16 13 C -0.12 -1.49 5.49 -25.35 -0.14 -1.63 16 14 C 0.03 0.35 6.49 -2.18 -0.01 0.34 16 15 N -0.48 -7.87 5.19 -231.40 -1.20 -9.07 16 16 C 0.03 0.59 5.39 -4.97 -0.03 0.56 16 17 C 0.44 10.11 7.43 -10.98 -0.08 10.03 16 18 O -0.58 -14.86 14.00 5.55 0.08 -14.79 16 19 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 20 C -0.30 -8.13 9.68 -14.93 -0.14 -8.28 16 21 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 24 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 C 0.04 0.55 4.78 -2.18 -0.01 0.54 16 29 H 0.08 1.02 6.32 -51.93 -0.33 0.69 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 32 H 0.41 4.73 8.27 -40.82 -0.34 4.39 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.12 1.41 7.44 -52.49 -0.39 1.02 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.50 7.91 -51.93 -0.41 0.09 16 41 H 0.07 0.91 7.71 -51.93 -0.40 0.50 16 42 H 0.07 1.03 7.31 -51.93 -0.38 0.65 16 43 H 0.04 0.52 7.92 -51.93 -0.41 0.11 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.05 0.78 7.98 -51.93 -0.41 0.36 16 46 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 47 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 48 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 49 H 0.11 1.97 6.14 -51.93 -0.32 1.65 16 50 H 0.05 0.81 7.66 -51.93 -0.40 0.41 16 LS Contribution 394.75 15.07 5.95 5.95 Total: -1.00 -30.78 394.75 -9.81 -40.59 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -8.26 Total: 14.87 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.85 Total: 0.74 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.77 Total: -55.44 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.14 Total: -22.40 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.78 -9.81 -40.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484030382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.137 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds