Wall clock time and date at job start Tue Mar 31 2020 19:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 110.37060 * 2 1 4 4 C 1.34773 * 120.00009 * 60.72475 * 3 2 1 5 5 O 1.21278 * 120.00298 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99920 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47541 * 180.02562 * 6 4 3 8 8 H 1.08997 * 110.34352 * 54.29380 * 7 6 4 9 9 C 1.51104 * 110.38418 * 292.01294 * 7 6 4 10 10 C 1.30530 * 111.10519 * 224.74560 * 9 7 6 11 11 C 1.51104 * 111.10057 * 0.02562 * 10 9 7 12 12 C 1.54629 * 110.39100 * 176.58761 * 7 6 4 13 13 C 1.54261 * 110.32457 * 122.18074 * 2 1 3 14 14 C 1.54381 * 105.06236 * 118.89140 * 13 2 1 15 15 N 1.48561 * 104.59057 * 23.85921 * 14 13 2 16 16 C 1.46904 * 110.99492 * 200.95914 * 15 14 13 17 17 C 1.50707 * 109.47039 * 176.46911 * 16 15 14 18 18 O 1.21292 * 119.99571 * 6.03338 * 17 16 15 19 19 N 1.34777 * 119.99963 * 186.03577 * 17 16 15 20 20 C 1.37091 * 120.00019 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00013 * 359.72020 * 20 19 17 22 22 C 1.38954 * 120.00102 * 179.97438 * 20 19 17 23 23 N 1.31401 * 120.00024 * 359.72385 * 22 20 19 24 24 Si 1.86802 * 120.00015 * 179.72429 * 22 20 19 25 25 H 1.48504 * 109.47127 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47182 * 119.99983 * 24 22 20 27 27 H 1.48499 * 109.47190 * 240.00237 * 24 22 20 28 28 C 1.48564 * 104.21931 * 320.50982 * 15 14 13 29 29 H 1.09001 * 109.46909 * 299.27243 * 1 2 3 30 30 H 1.08999 * 109.47034 * 59.27369 * 1 2 3 31 31 H 1.09005 * 109.47275 * 179.27612 * 1 2 3 32 32 H 0.97006 * 119.99632 * 240.73450 * 3 2 1 33 33 H 1.09002 * 109.47242 * 300.00169 * 6 4 3 34 34 H 1.09007 * 109.47417 * 59.99968 * 6 4 3 35 35 H 1.07997 * 124.44841 * 44.76489 * 9 7 6 36 36 H 1.08000 * 124.45089 * 180.02562 * 10 9 7 37 37 H 1.09002 * 110.38996 * 135.24725 * 11 10 9 38 38 H 1.09004 * 110.38021 * 257.62325 * 11 10 9 39 39 H 1.09002 * 111.03583 * 261.47788 * 12 7 6 40 40 H 1.09003 * 111.03882 * 25.41017 * 12 7 6 41 41 H 1.09002 * 110.32138 * 359.97438 * 13 2 1 42 42 H 1.08994 * 110.32297 * 237.79423 * 13 2 1 43 43 H 1.08994 * 110.41503 * 265.07477 * 14 13 2 44 44 H 1.09002 * 110.40903 * 142.63115 * 14 13 2 45 45 H 1.09000 * 109.47318 * 56.47190 * 16 15 14 46 46 H 1.08998 * 109.47353 * 296.46559 * 16 15 14 47 47 H 0.96994 * 119.99831 * 359.97438 * 19 17 16 48 48 H 0.97000 * 120.00128 * 180.02562 * 23 22 20 49 49 H 1.09004 * 110.40573 * 158.26542 * 28 15 14 50 50 H 1.09005 * 110.41104 * 280.70781 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0399 1.3733 0.0000 4 6 1.7394 2.2037 1.0181 5 8 1.0473 1.8140 1.9345 6 6 2.2635 3.6167 1.0178 7 6 1.7805 4.3402 2.2764 8 1 2.0532 3.7742 3.1671 9 6 0.2848 4.5483 2.2225 10 6 -0.0346 5.7600 2.5879 11 6 1.1949 6.5622 2.9458 12 6 2.3762 5.7657 2.3405 13 6 2.0658 -0.7704 1.2243 14 6 2.8806 -1.9423 0.6359 15 7 3.2693 -1.4829 -0.7224 16 6 3.6067 -2.6218 -1.5867 17 6 3.9111 -2.1249 -2.9765 18 8 3.9602 -0.9332 -3.1972 19 7 4.1288 -3.0046 -3.9741 20 6 4.4062 -2.5525 -5.2383 21 1 4.4459 -1.4915 -5.4358 22 6 4.6312 -3.4595 -6.2667 23 7 4.5833 -4.7505 -6.0264 24 14 5.0016 -2.8435 -7.9909 25 1 4.9977 -1.3585 -7.9975 26 1 6.3356 -3.3374 -8.4171 27 1 3.9652 -3.3448 -8.9290 28 6 2.0661 -0.7711 -1.2252 29 1 -0.3633 0.5025 0.8965 30 1 -0.3633 0.5251 -0.8834 31 1 -0.3634 -1.0276 -0.0130 32 1 2.5938 1.6850 -0.7329 33 1 3.3534 3.6000 1.0045 34 1 1.8974 4.1399 0.1344 35 1 -0.4265 3.7935 1.9216 36 1 -1.0449 6.1394 2.6291 37 1 1.1407 7.5574 2.5046 38 1 1.3014 6.6311 4.0284 39 1 3.2476 5.7965 2.9947 40 1 2.6241 6.1314 1.3440 41 1 1.2387 -1.1482 1.8255 42 1 2.7081 -0.1267 1.8252 43 1 2.2647 -2.8393 0.5721 44 1 3.7670 -2.1309 1.2415 45 1 2.7638 -3.3118 -1.6241 46 1 4.4799 -3.1363 -1.1855 47 1 4.0899 -3.9575 -3.7975 48 1 4.7407 -5.3836 -6.7442 49 1 2.3394 -0.0780 -2.0209 50 1 1.3228 -1.4850 -1.5803 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484030382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:05 Heat of formation + Delta-G solvation = -72.674934 kcal Electronic energy + Delta-G solvation = -29205.129444 eV Core-core repulsion = 25231.357383 eV Total energy + Delta-G solvation = -3973.772061 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.55970 -40.44887 -39.56811 -38.59799 -36.03416 -35.44600 -33.34300 -33.11775 -31.83528 -30.57304 -29.75223 -28.81619 -27.07297 -26.37781 -25.38197 -22.53276 -22.15902 -21.22595 -20.96994 -20.36943 -19.85372 -19.57170 -17.97081 -17.85372 -17.20177 -16.83722 -16.67545 -16.46299 -16.26936 -16.12511 -15.73402 -15.45522 -15.19923 -14.82430 -14.55402 -14.12704 -13.94638 -13.79073 -13.53910 -13.30881 -13.25676 -13.01166 -12.99540 -12.90142 -12.73529 -12.65841 -12.58664 -12.39201 -12.29953 -12.10734 -12.07003 -11.98985 -11.87293 -11.80706 -11.63726 -11.45865 -10.52918 -10.27236 -10.00079 -9.98219 -9.76112 -9.39760 -8.46006 -5.94125 1.36768 1.42038 1.42393 1.56075 1.77874 2.05459 2.28601 2.29260 2.81899 3.21181 3.32005 3.42199 3.68674 3.75616 3.80824 4.00907 4.07113 4.07486 4.22852 4.30555 4.31292 4.39239 4.45356 4.50754 4.56861 4.60021 4.67253 4.69465 4.73041 4.74959 4.78407 4.80225 4.95173 4.99819 5.01832 5.05415 5.12504 5.18218 5.24695 5.31170 5.42262 5.44143 5.63893 5.72019 5.81145 5.90302 6.02762 6.07858 6.60873 6.68429 7.13769 7.37526 7.57224 8.12084 8.71640 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.002205 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.117739 B =12695.856538 C =13599.120786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.174 3.826 3 N -0.713 5.713 4 C 0.512 3.488 5 O -0.566 6.566 6 C -0.129 4.129 7 C -0.050 4.050 8 H 0.072 0.928 9 C -0.162 4.162 10 C -0.178 4.178 11 C -0.100 4.100 12 C -0.119 4.119 13 C -0.108 4.108 14 C 0.031 3.969 15 N -0.501 5.501 16 C 0.045 3.955 17 C 0.442 3.558 18 O -0.611 6.611 19 N -0.574 5.574 20 C -0.328 4.328 21 H 0.081 0.919 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.272 1.272 28 C 0.040 3.960 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.407 0.593 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.129 0.871 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.092 0.908 45 H 0.069 0.931 46 H 0.111 0.889 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.080 0.920 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.632 14.047 16.852 22.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.087 3.913 3 N -0.365 5.365 4 C 0.301 3.699 5 O -0.445 6.445 6 C -0.169 4.169 7 C -0.069 4.069 8 H 0.090 0.910 9 C -0.180 4.180 10 C -0.196 4.196 11 C -0.137 4.137 12 C -0.156 4.156 13 C -0.147 4.147 14 C -0.097 4.097 15 N -0.225 5.225 16 C -0.087 4.087 17 C 0.229 3.771 18 O -0.497 6.497 19 N -0.212 5.212 20 C -0.457 4.457 21 H 0.099 0.901 22 C -0.215 4.215 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.198 1.198 27 H -0.198 1.198 28 C -0.088 4.088 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.243 0.757 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.147 0.853 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.110 0.890 45 H 0.087 0.913 46 H 0.129 0.871 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.098 0.902 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.567 14.727 17.229 23.597 hybrid contribution -0.346 -1.184 -1.385 1.855 sum -6.913 13.543 15.843 21.959 Atomic orbital electron populations 1.22113 0.93266 1.02811 1.02602 1.20951 0.93807 0.81939 0.94574 1.46245 1.53346 1.11855 1.25043 1.21084 0.79583 0.88184 0.81082 1.90633 1.39393 1.77990 1.36497 1.21766 1.03310 0.91018 1.00818 1.20768 0.92805 0.96556 0.96762 0.90987 1.23263 0.96918 0.96981 1.00807 1.23505 0.99708 0.95964 1.00422 1.21415 0.91980 0.99128 1.01164 1.22611 0.97920 0.92779 1.02303 1.22549 0.99460 0.96238 0.96477 1.23284 0.99772 0.97044 0.89576 1.65178 1.33603 1.21707 1.02029 1.21977 1.02878 0.93173 0.90636 1.20650 0.82667 0.86573 0.87164 1.90454 1.57496 1.17328 1.84435 1.41942 1.62492 1.08817 1.07936 1.19680 1.46500 0.93871 0.85692 0.90123 1.26035 0.96803 0.95079 1.03556 1.69676 1.49848 1.01501 1.35225 0.84881 0.78156 0.78256 0.77121 1.19644 1.19778 1.19783 1.23326 0.90853 0.97953 0.96648 0.91241 0.92695 0.90919 0.75732 0.87138 0.87671 0.87719 0.85346 0.90034 0.90383 0.89733 0.89940 0.89912 0.91683 0.92257 0.89009 0.91308 0.87136 0.77116 0.91396 0.90201 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 8.17 71.98 0.59 -3.03 16 2 C 0.17 4.50 1.01 4.50 0.00 4.51 16 3 N -0.71 -17.30 5.10 -418.90 -2.13 -19.44 16 4 C 0.51 12.05 6.77 87.66 0.59 12.65 16 5 O -0.57 -16.17 12.09 -3.02 -0.04 -16.21 16 6 C -0.13 -2.22 5.10 29.85 0.15 -2.07 16 7 C -0.05 -0.90 2.53 -10.86 -0.03 -0.92 16 8 H 0.07 1.51 7.96 -2.39 -0.02 1.50 16 9 C -0.16 -3.24 9.23 26.26 0.24 -3.00 16 10 C -0.18 -2.95 10.78 26.26 0.28 -2.67 16 11 C -0.10 -1.30 6.81 30.59 0.21 -1.09 16 12 C -0.12 -1.53 6.72 31.76 0.21 -1.32 16 13 C -0.11 -2.66 5.49 31.49 0.17 -2.48 16 14 C 0.03 0.75 6.49 86.45 0.56 1.31 16 15 N -0.50 -15.74 5.19 -886.01 -4.59 -20.33 16 16 C 0.04 1.51 5.39 85.56 0.46 1.97 16 17 C 0.44 20.31 7.43 87.66 0.65 20.96 16 18 O -0.61 -31.95 14.00 -3.07 -0.04 -32.00 16 19 N -0.57 -28.79 5.29 -306.98 -1.62 -30.42 16 20 C -0.33 -18.20 9.68 84.04 0.81 -17.39 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 22 C -0.02 -0.80 5.50 84.93 0.47 -0.33 16 23 N -0.92 -49.21 13.05 21.66 0.28 -48.93 16 24 Si 0.99 42.35 29.55 68.60 2.03 44.38 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 C 0.04 1.26 4.78 86.45 0.41 1.67 16 29 H 0.07 1.82 6.32 -2.39 -0.02 1.80 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.58 8.12 -2.38 -0.02 1.56 16 32 H 0.41 9.59 8.27 -92.70 -0.77 8.82 16 33 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.10 2.48 7.44 -2.91 -0.02 2.46 16 36 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 0.92 7.91 -2.39 -0.02 0.91 16 41 H 0.08 1.89 7.71 -2.39 -0.02 1.87 16 42 H 0.06 1.74 7.31 -2.39 -0.02 1.72 16 43 H 0.06 1.27 7.92 -2.39 -0.02 1.25 16 44 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.07 2.07 7.98 -2.39 -0.02 2.05 16 46 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 47 H 0.40 18.95 7.90 -92.71 -0.73 18.22 16 48 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 49 H 0.08 2.96 6.14 -2.38 -0.01 2.95 16 50 H 0.05 1.53 7.66 -2.38 -0.02 1.51 16 Total: -1.00 -66.63 394.75 -0.87 -67.50 By element: Atomic # 1 Polarization: 47.22 SS G_CDS: -0.55 Total: 46.67 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 5.80 Total: 8.77 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -8.07 Total: -119.12 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -0.08 Total: -48.20 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -66.63 -0.87 -67.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484030382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.178 kcal (2) G-P(sol) polarization free energy of solvation -66.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds