Wall clock time and date at job start Tue Mar 31 2020 19:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 110.27699 * 2 1 4 4 C 1.34777 * 120.00199 * 302.09555 * 3 2 1 5 5 O 1.21283 * 119.99750 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99928 * 180.27479 * 4 3 2 7 7 H 1.08995 * 115.54871 * 34.13521 * 6 4 3 8 8 C 1.52999 * 117.49844 * 248.46973 * 6 4 3 9 9 C 1.52996 * 117.49546 * 179.81078 * 6 4 3 10 10 H 1.08995 * 117.50529 * 359.97438 * 9 6 4 11 11 C 1.53008 * 117.49622 * 215.00101 * 9 6 4 12 12 C 1.52997 * 117.50115 * 128.74767 * 11 9 6 13 13 C 1.52994 * 117.49877 * 60.08581 * 11 9 6 14 14 C 1.54601 * 110.38927 * 237.85670 * 2 1 3 15 15 C 1.54937 * 102.92142 * 219.08204 * 14 2 1 16 16 N 1.48531 * 103.22427 * 37.41826 * 15 14 2 17 17 C 1.46905 * 111.00204 * 200.27581 * 16 15 14 18 18 C 1.50700 * 109.46886 * 287.40084 * 17 16 15 19 19 O 1.21290 * 120.00415 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99670 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99962 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99625 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99895 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00265 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99871 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47336 * 59.99813 * 25 23 21 27 27 H 1.48496 * 109.47367 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47399 * 299.99811 * 25 23 21 29 29 C 1.47905 * 105.82386 * 320.78870 * 16 15 14 30 30 H 1.08997 * 109.47324 * 59.29256 * 1 2 3 31 31 H 1.08995 * 109.47495 * 179.29723 * 1 2 3 32 32 H 1.09007 * 109.46919 * 299.29477 * 1 2 3 33 33 H 0.97000 * 119.99484 * 122.08652 * 3 2 1 34 34 H 1.09007 * 117.49732 * 359.97438 * 8 6 4 35 35 H 1.08998 * 117.49972 * 145.01907 * 8 6 4 36 36 H 1.09000 * 115.54411 * 274.41847 * 11 9 6 37 37 H 1.09005 * 117.49623 * 0.02562 * 12 11 9 38 38 H 1.08993 * 117.50047 * 145.01973 * 12 11 9 39 39 H 1.09002 * 117.50094 * 214.98308 * 13 11 9 40 40 H 1.09001 * 117.50254 * 359.97438 * 13 11 9 41 41 H 1.09004 * 110.72565 * 337.44335 * 14 2 1 42 42 H 1.09005 * 110.72185 * 100.72377 * 14 2 1 43 43 H 1.08993 * 110.67215 * 278.98441 * 15 14 2 44 44 H 1.09000 * 110.80569 * 155.91353 * 15 14 2 45 45 H 1.09004 * 109.46573 * 47.39345 * 17 16 15 46 46 H 1.08994 * 109.47447 * 167.39055 * 17 16 15 47 47 H 0.97003 * 120.00307 * 359.97438 * 20 18 17 48 48 H 0.96999 * 120.00283 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.91681 * 265.98279 * 29 16 15 50 50 H 1.08998 * 110.08061 * 144.77530 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0377 1.3742 0.0000 4 6 1.6895 2.2213 -0.9888 5 8 0.9563 1.8457 -1.8788 6 6 2.2168 3.6330 -0.9921 7 1 3.2255 3.7590 -0.5989 8 6 1.2149 4.7619 -0.7416 9 6 1.7885 4.5443 -2.1440 10 1 1.1258 4.1228 -2.8997 11 6 2.8091 5.5629 -2.6559 12 6 3.0777 5.5982 -4.1617 13 6 4.1292 5.0229 -3.2097 14 6 2.0686 -0.7710 -1.2270 15 6 3.2881 -1.5326 -0.6497 16 7 2.8333 -1.9217 0.7097 17 6 3.9767 -2.2226 1.5815 18 6 4.5875 -3.5382 1.1726 19 8 4.1164 -4.1639 0.2464 20 7 5.6574 -4.0196 1.8360 21 6 6.2128 -5.2167 1.4644 22 1 5.7927 -5.7741 0.6403 23 6 7.3161 -5.7127 2.1481 24 7 7.8275 -5.0342 3.1506 25 14 8.0732 -7.3434 1.6413 26 1 8.5328 -7.2590 0.2317 27 1 9.2302 -7.6467 2.5213 28 1 7.0589 -8.4207 1.7675 29 6 2.0645 -0.7673 1.2235 30 1 -0.3634 0.5248 -0.8835 31 1 -0.3634 -1.0275 -0.0126 32 1 -0.3633 0.5029 0.8963 33 1 2.6244 1.6744 0.7118 34 1 0.1743 4.4835 -0.5748 35 1 1.5647 5.6307 -0.1840 36 1 2.8392 6.5098 -2.1169 37 1 2.5269 4.8961 -4.7878 38 1 3.2848 6.5683 -4.6134 39 1 5.0278 5.6148 -3.0354 40 1 4.2709 3.9422 -3.2089 41 1 1.3205 -1.4690 -1.6029 42 1 2.3808 -0.0800 -2.0101 43 1 4.1580 -0.8785 -0.5917 44 1 3.5116 -2.4159 -1.2480 45 1 4.7216 -1.4321 1.4895 46 1 3.6387 -2.2847 2.6158 47 1 6.0344 -3.5191 2.5765 48 1 8.5974 -5.3806 3.6281 49 1 2.7149 -0.1205 1.8124 50 1 1.2327 -1.1146 1.8364 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484066326.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:52 Heat of formation + Delta-G solvation = -12.647646 kcal Electronic energy + Delta-G solvation = -28919.140454 eV Core-core repulsion = 24947.971371 eV Total energy + Delta-G solvation = -3971.169083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.75351 -39.29454 -38.23087 -37.42936 -35.25629 -34.57424 -33.78093 -31.64282 -31.13961 -29.63306 -27.53256 -25.73097 -25.02178 -23.90651 -23.62365 -22.72100 -21.62791 -20.79696 -19.91645 -19.66133 -19.14040 -17.87634 -17.57257 -16.44538 -16.14086 -15.89219 -15.41667 -15.15031 -14.87847 -14.68170 -14.53056 -14.30288 -13.99716 -13.58886 -13.39799 -13.29871 -13.09791 -12.69137 -12.53639 -12.34660 -12.11593 -11.98969 -11.77079 -11.75703 -11.48689 -11.34708 -11.29031 -11.23262 -11.17044 -10.99765 -10.87621 -10.73042 -10.43516 -10.40616 -10.20392 -10.06795 -9.73265 -9.47528 -9.17682 -8.49163 -8.00665 -7.93220 -6.40609 -3.81264 2.29480 2.84854 3.20890 3.26280 3.29602 3.30991 3.62211 3.91844 4.03969 4.16234 4.27653 4.35221 4.40711 4.46358 4.65329 4.69855 4.74100 4.86971 4.89660 4.90803 5.07627 5.14192 5.24645 5.30314 5.32198 5.32550 5.44771 5.49905 5.54631 5.57830 5.67106 5.71635 5.75522 5.79579 5.79898 5.82260 5.92433 5.92850 6.02023 6.19982 6.23725 6.28809 6.43304 6.49051 7.12949 7.17997 7.36703 7.56111 8.07320 8.08673 8.63358 9.19543 9.55751 10.08083 10.77214 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016842 B = 0.002129 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.070236 B =13147.738398 C =13995.197607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.165 3.835 3 N -0.717 5.717 4 C 0.545 3.455 5 O -0.534 6.534 6 C -0.187 4.187 7 H 0.123 0.877 8 C -0.144 4.144 9 C -0.088 4.088 10 H 0.120 0.880 11 C -0.130 4.130 12 C -0.174 4.174 13 C -0.177 4.177 14 C -0.120 4.120 15 C 0.040 3.960 16 N -0.487 5.487 17 C 0.037 3.963 18 C 0.446 3.554 19 O -0.575 6.575 20 N -0.566 5.566 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.904 5.904 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 C 0.035 3.965 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.398 0.602 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.036 0.964 44 H 0.099 0.901 45 H 0.049 0.951 46 H 0.088 0.912 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.047 0.953 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.326 23.493 -4.815 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.079 3.921 3 N -0.368 5.368 4 C 0.331 3.669 5 O -0.411 6.411 6 C -0.209 4.209 7 H 0.141 0.859 8 C -0.182 4.182 9 C -0.107 4.107 10 H 0.138 0.862 11 C -0.148 4.148 12 C -0.211 4.211 13 C -0.213 4.213 14 C -0.158 4.158 15 C -0.087 4.087 16 N -0.211 5.211 17 C -0.095 4.095 18 C 0.231 3.769 19 O -0.459 6.459 20 N -0.203 5.203 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.094 4.094 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.233 0.767 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.054 0.946 44 H 0.118 0.882 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.065 0.935 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.315 22.238 -5.955 25.652 hybrid contribution 1.736 0.364 0.954 2.014 sum -9.580 22.603 -5.001 25.053 Atomic orbital electron populations 1.22165 0.93215 1.03003 1.02890 1.21183 0.94654 0.80294 0.96001 1.46222 1.51344 1.11924 1.27352 1.19600 0.80149 0.85785 0.81360 1.90669 1.36614 1.77521 1.36281 1.22339 1.01164 0.89916 1.07432 0.85925 1.23052 0.98266 0.97967 0.98871 1.21818 0.99715 0.97449 0.91674 0.86250 1.21780 0.96976 0.99294 0.96707 1.23002 1.03232 1.02789 0.92075 1.23000 0.92698 1.01543 1.04105 1.22852 0.98124 0.98420 0.96451 1.23311 0.95228 0.99531 0.90626 1.64525 1.20876 1.33688 1.02039 1.22080 0.92339 0.97328 0.97768 1.19678 0.83252 0.87756 0.86254 1.90513 1.63364 1.60746 1.31251 1.41851 1.26566 1.20814 1.31086 1.19645 1.10348 0.96955 1.15774 0.87989 1.25250 0.97024 0.99747 0.95976 1.69602 1.24501 1.39242 1.21163 0.85922 0.78349 0.81578 0.78395 1.19943 1.21012 1.19885 1.23218 0.98838 0.91793 0.95516 0.90312 0.91096 0.92892 0.76698 0.88140 0.87777 0.87431 0.88521 0.88719 0.88728 0.88531 0.89810 0.90618 0.94559 0.88244 0.93312 0.89346 0.77565 0.91872 0.93504 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.12 37.16 0.30 -1.47 16 2 C 0.16 1.95 0.94 -130.46 -0.12 1.82 16 3 N -0.72 -7.10 5.15 -46.35 -0.24 -7.34 16 4 C 0.54 5.92 6.80 -10.98 -0.07 5.84 16 5 O -0.53 -7.53 13.16 5.55 0.07 -7.46 16 6 C -0.19 -1.51 5.83 -91.77 -0.54 -2.05 16 7 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 8 C -0.14 -0.97 9.96 -26.69 -0.27 -1.23 16 9 C -0.09 -0.70 5.38 -90.58 -0.49 -1.19 16 10 H 0.12 1.17 7.67 -51.93 -0.40 0.77 16 11 C -0.13 -0.88 5.87 -90.62 -0.53 -1.42 16 12 C -0.17 -1.19 10.25 -26.70 -0.27 -1.46 16 13 C -0.18 -1.25 10.18 -26.70 -0.27 -1.53 16 14 C -0.12 -1.68 5.85 -24.87 -0.15 -1.83 16 15 C 0.04 0.66 5.94 -1.90 -0.01 0.65 16 16 N -0.49 -8.07 4.91 -231.89 -1.14 -9.21 16 17 C 0.04 0.65 5.19 -4.97 -0.03 0.62 16 18 C 0.45 10.54 7.61 -10.99 -0.08 10.46 16 19 O -0.58 -15.65 14.64 5.55 0.08 -15.57 16 20 N -0.57 -14.35 5.29 -10.96 -0.06 -14.41 16 21 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 25 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 C 0.04 0.43 6.12 -2.75 -0.02 0.42 16 30 H 0.08 1.02 6.07 -51.93 -0.32 0.70 16 31 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.40 3.06 8.09 -40.82 -0.33 2.73 16 34 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.23 7.86 -51.93 -0.41 0.82 16 42 H 0.08 1.10 6.81 -51.93 -0.35 0.75 16 43 H 0.04 0.57 7.81 -51.93 -0.41 0.17 16 44 H 0.10 1.93 7.10 -51.93 -0.37 1.56 16 45 H 0.05 0.78 7.83 -51.93 -0.41 0.37 16 46 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 47 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.05 0.49 7.09 -51.93 -0.37 0.13 16 50 H 0.09 1.07 7.68 -51.93 -0.40 0.67 16 LS Contribution 403.18 15.07 6.08 6.08 Total: -1.00 -32.49 403.18 -10.52 -43.01 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -8.23 Total: 12.97 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.79 Total: -0.34 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.71 Total: -54.81 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.15 Total: -23.03 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.49 -10.52 -43.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484066326.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.365 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds