Wall clock time and date at job start Tue Mar 31 2020 19:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 110.27699 * 2 1 4 4 C 1.34777 * 120.00199 * 302.09555 * 3 2 1 5 5 O 1.21283 * 119.99750 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99928 * 180.27479 * 4 3 2 7 7 H 1.08995 * 115.54871 * 34.13521 * 6 4 3 8 8 C 1.52999 * 117.49844 * 248.46973 * 6 4 3 9 9 C 1.52996 * 117.49546 * 179.81078 * 6 4 3 10 10 H 1.08995 * 117.50529 * 359.97438 * 9 6 4 11 11 C 1.53008 * 117.49622 * 215.00101 * 9 6 4 12 12 C 1.52997 * 117.50115 * 128.74767 * 11 9 6 13 13 C 1.52994 * 117.49877 * 60.08581 * 11 9 6 14 14 C 1.54601 * 110.38927 * 237.85670 * 2 1 3 15 15 C 1.54937 * 102.92142 * 219.08204 * 14 2 1 16 16 N 1.48531 * 103.22427 * 37.41826 * 15 14 2 17 17 C 1.46905 * 111.00204 * 200.27581 * 16 15 14 18 18 C 1.50700 * 109.46886 * 287.40084 * 17 16 15 19 19 O 1.21290 * 120.00415 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99670 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99962 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99625 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99895 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00265 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99871 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47336 * 59.99813 * 25 23 21 27 27 H 1.48496 * 109.47367 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47399 * 299.99811 * 25 23 21 29 29 C 1.47905 * 105.82386 * 320.78870 * 16 15 14 30 30 H 1.08997 * 109.47324 * 59.29256 * 1 2 3 31 31 H 1.08995 * 109.47495 * 179.29723 * 1 2 3 32 32 H 1.09007 * 109.46919 * 299.29477 * 1 2 3 33 33 H 0.97000 * 119.99484 * 122.08652 * 3 2 1 34 34 H 1.09007 * 117.49732 * 359.97438 * 8 6 4 35 35 H 1.08998 * 117.49972 * 145.01907 * 8 6 4 36 36 H 1.09000 * 115.54411 * 274.41847 * 11 9 6 37 37 H 1.09005 * 117.49623 * 0.02562 * 12 11 9 38 38 H 1.08993 * 117.50047 * 145.01973 * 12 11 9 39 39 H 1.09002 * 117.50094 * 214.98308 * 13 11 9 40 40 H 1.09001 * 117.50254 * 359.97438 * 13 11 9 41 41 H 1.09004 * 110.72565 * 337.44335 * 14 2 1 42 42 H 1.09005 * 110.72185 * 100.72377 * 14 2 1 43 43 H 1.08993 * 110.67215 * 278.98441 * 15 14 2 44 44 H 1.09000 * 110.80569 * 155.91353 * 15 14 2 45 45 H 1.09004 * 109.46573 * 47.39345 * 17 16 15 46 46 H 1.08994 * 109.47447 * 167.39055 * 17 16 15 47 47 H 0.97003 * 120.00307 * 359.97438 * 20 18 17 48 48 H 0.96999 * 120.00283 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.91681 * 265.98279 * 29 16 15 50 50 H 1.08998 * 110.08061 * 144.77530 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0377 1.3742 0.0000 4 6 1.6895 2.2213 -0.9888 5 8 0.9563 1.8457 -1.8788 6 6 2.2168 3.6330 -0.9921 7 1 3.2255 3.7590 -0.5989 8 6 1.2149 4.7619 -0.7416 9 6 1.7885 4.5443 -2.1440 10 1 1.1258 4.1228 -2.8997 11 6 2.8091 5.5629 -2.6559 12 6 3.0777 5.5982 -4.1617 13 6 4.1292 5.0229 -3.2097 14 6 2.0686 -0.7710 -1.2270 15 6 3.2881 -1.5326 -0.6497 16 7 2.8333 -1.9217 0.7097 17 6 3.9767 -2.2226 1.5815 18 6 4.5875 -3.5382 1.1726 19 8 4.1164 -4.1639 0.2464 20 7 5.6574 -4.0196 1.8360 21 6 6.2128 -5.2167 1.4644 22 1 5.7927 -5.7741 0.6403 23 6 7.3161 -5.7127 2.1481 24 7 7.8275 -5.0342 3.1506 25 14 8.0732 -7.3434 1.6413 26 1 8.5328 -7.2590 0.2317 27 1 9.2302 -7.6467 2.5213 28 1 7.0589 -8.4207 1.7675 29 6 2.0645 -0.7673 1.2235 30 1 -0.3634 0.5248 -0.8835 31 1 -0.3634 -1.0275 -0.0126 32 1 -0.3633 0.5029 0.8963 33 1 2.6244 1.6744 0.7118 34 1 0.1743 4.4835 -0.5748 35 1 1.5647 5.6307 -0.1840 36 1 2.8392 6.5098 -2.1169 37 1 2.5269 4.8961 -4.7878 38 1 3.2848 6.5683 -4.6134 39 1 5.0278 5.6148 -3.0354 40 1 4.2709 3.9422 -3.2089 41 1 1.3205 -1.4690 -1.6029 42 1 2.3808 -0.0800 -2.0101 43 1 4.1580 -0.8785 -0.5917 44 1 3.5116 -2.4159 -1.2480 45 1 4.7216 -1.4321 1.4895 46 1 3.6387 -2.2847 2.6158 47 1 6.0344 -3.5191 2.5765 48 1 8.5974 -5.3806 3.6281 49 1 2.7149 -0.1205 1.8124 50 1 1.2327 -1.1146 1.8364 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484066326.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:51 Heat of formation + Delta-G solvation = -35.074531 kcal Electronic energy + Delta-G solvation = -28920.112956 eV Core-core repulsion = 24947.971371 eV Total energy + Delta-G solvation = -3972.141585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.68945 -40.46043 -39.54948 -38.50769 -36.12701 -35.81132 -35.42809 -33.30495 -32.59598 -30.79117 -28.91922 -26.97345 -26.18425 -25.22565 -24.28294 -23.26561 -22.82085 -21.62560 -21.06432 -20.59296 -20.49371 -19.87128 -18.40126 -17.85515 -17.32762 -16.73003 -16.53597 -16.30223 -16.15763 -15.97227 -15.89294 -15.60059 -15.24801 -14.86901 -14.70940 -14.25596 -14.14889 -13.97905 -13.64171 -13.43478 -13.32234 -13.19754 -12.96649 -12.92379 -12.54808 -12.44889 -12.40994 -12.39602 -12.31234 -12.12366 -12.02807 -11.90542 -11.86278 -11.78179 -11.47707 -10.97941 -10.73705 -10.51083 -10.31781 -10.09730 -9.99778 -9.34949 -8.46002 -5.94268 1.39446 1.41188 1.49958 1.51845 2.03580 2.07137 2.29198 2.68418 2.82804 3.05816 3.20452 3.29215 3.47169 3.60033 3.69079 3.75919 3.84713 3.90866 4.06376 4.14818 4.19154 4.26639 4.28510 4.29713 4.36236 4.42576 4.49803 4.52758 4.57671 4.74880 4.78343 4.80035 4.82790 4.85802 4.92277 5.00058 5.03519 5.06390 5.08628 5.21713 5.26531 5.29631 5.35587 5.41186 5.53053 5.81546 5.93039 6.08563 6.57909 6.62154 7.14214 7.27909 7.57863 8.14603 8.71185 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016842 B = 0.002129 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.070236 B =13147.738398 C =13995.197607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.172 3.828 3 N -0.706 5.706 4 C 0.540 3.460 5 O -0.572 6.572 6 C -0.189 4.189 7 H 0.142 0.858 8 C -0.124 4.124 9 C -0.099 4.099 10 H 0.094 0.906 11 C -0.122 4.122 12 C -0.181 4.181 13 C -0.181 4.181 14 C -0.112 4.112 15 C 0.046 3.954 16 N -0.511 5.511 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.076 0.924 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.273 1.273 29 C 0.040 3.960 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.413 0.587 34 H 0.094 0.906 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.116 0.884 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.076 0.924 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.951 25.697 -2.925 27.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.086 3.914 3 N -0.359 5.359 4 C 0.329 3.671 5 O -0.452 6.452 6 C -0.210 4.210 7 H 0.160 0.840 8 C -0.162 4.162 9 C -0.118 4.118 10 H 0.112 0.888 11 C -0.140 4.140 12 C -0.218 4.218 13 C -0.218 4.218 14 C -0.151 4.151 15 C -0.082 4.082 16 N -0.235 5.235 17 C -0.082 4.082 18 C 0.228 3.772 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.094 0.906 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.199 1.199 27 H -0.194 1.194 28 H -0.198 1.198 29 C -0.088 4.088 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.251 0.749 34 H 0.113 0.887 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.134 0.866 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.095 0.905 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.929 24.479 -4.024 27.108 hybrid contribution 1.563 -0.320 0.306 1.625 sum -9.366 24.160 -3.718 26.177 Atomic orbital electron populations 1.22091 0.92762 1.02789 1.03022 1.20993 0.94903 0.81048 0.94500 1.46086 1.51261 1.10893 1.27651 1.20115 0.79454 0.86860 0.80717 1.90663 1.38397 1.78396 1.37724 1.22337 1.02344 0.88313 1.07960 0.84042 1.23147 0.97667 0.97807 0.97550 1.21765 1.00165 0.98054 0.91837 0.88813 1.21825 0.96085 0.99503 0.96573 1.23062 1.03163 1.03225 0.92310 1.23006 0.93421 1.00833 1.04497 1.22726 0.96979 0.98074 0.97348 1.23122 0.96399 0.98025 0.90665 1.64418 1.20718 1.36480 1.01920 1.21952 0.93156 0.94071 0.98975 1.20806 0.82179 0.89319 0.84923 1.90492 1.64322 1.62563 1.32935 1.41911 1.27294 1.20447 1.31599 1.19590 1.11803 0.98524 1.16259 0.90556 1.25999 0.96790 1.02757 0.95705 1.69655 1.24695 1.40349 1.21379 0.85022 0.77781 0.77536 0.78202 1.19863 1.19383 1.19805 1.23261 0.99093 0.90791 0.95675 0.92005 0.91466 0.90915 0.74949 0.88704 0.85093 0.85505 0.89780 0.87267 0.87409 0.90125 0.91079 0.91384 0.93876 0.92381 0.90862 0.86648 0.76963 0.91311 0.90541 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.12 71.98 0.58 -2.63 16 2 C 0.17 3.81 0.94 4.48 0.00 3.82 16 3 N -0.71 -12.48 5.15 -418.94 -2.16 -14.64 16 4 C 0.54 11.15 6.80 87.66 0.60 11.75 16 5 O -0.57 -16.34 13.16 -3.04 -0.04 -16.38 16 6 C -0.19 -2.67 5.83 -11.54 -0.07 -2.74 16 7 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 8 C -0.12 -1.36 9.96 30.62 0.30 -1.05 16 9 C -0.10 -1.49 5.38 -10.77 -0.06 -1.54 16 10 H 0.09 1.90 7.67 -2.39 -0.02 1.89 16 11 C -0.12 -1.45 5.87 -10.79 -0.06 -1.51 16 12 C -0.18 -2.32 10.25 30.62 0.31 -2.01 16 13 C -0.18 -2.35 10.18 30.62 0.31 -2.04 16 14 C -0.11 -3.21 5.85 31.80 0.19 -3.03 16 15 C 0.05 1.51 5.94 86.65 0.51 2.03 16 16 N -0.51 -16.34 4.91 -887.57 -4.35 -20.69 16 17 C 0.05 1.67 5.19 85.56 0.44 2.11 16 18 C 0.44 21.05 7.61 87.66 0.67 21.72 16 19 O -0.62 -34.79 14.64 -3.06 -0.04 -34.84 16 20 N -0.57 -29.47 5.29 -306.98 -1.62 -31.09 16 21 C -0.33 -18.98 9.68 84.04 0.81 -18.16 16 22 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 24 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16 25 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 29 C 0.04 0.86 6.12 86.45 0.53 1.39 16 30 H 0.06 1.59 6.07 -2.39 -0.01 1.57 16 31 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 32 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.41 4.92 8.09 -92.71 -0.75 4.17 16 34 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 2.18 7.86 -2.38 -0.02 2.17 16 42 H 0.07 2.04 6.81 -2.38 -0.02 2.03 16 43 H 0.04 1.34 7.81 -2.39 -0.02 1.32 16 44 H 0.06 2.39 7.10 -2.39 -0.02 2.38 16 45 H 0.07 2.13 7.83 -2.38 -0.02 2.11 16 46 H 0.12 3.28 8.08 -2.39 -0.02 3.27 16 47 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 48 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 49 H 0.08 1.26 7.09 -2.39 -0.02 1.24 16 50 H 0.10 2.07 7.68 -2.39 -0.02 2.05 16 Total: -1.00 -73.11 403.18 -0.88 -73.99 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: -0.52 Total: 39.68 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 5.55 Total: 7.88 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -7.85 Total: -115.59 kcal Atomic # 8 Polarization: -51.13 SS G_CDS: -0.08 Total: -51.21 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -73.11 -0.88 -73.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484066326.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.920 kcal (2) G-P(sol) polarization free energy of solvation -73.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds