Wall clock time and date at job start Tue Mar 31 2020 19:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 110.63881 * 2 1 4 4 N 1.46905 * 109.47506 * 56.85696 * 3 2 1 5 5 C 1.46896 * 111.00351 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46828 * 180.02562 * 5 4 3 7 7 O 1.21294 * 120.00269 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99635 * 179.97438 * 6 5 4 9 9 C 1.37099 * 119.99952 * 179.97438 * 8 6 5 10 10 H 1.08001 * 120.00045 * 0.02562 * 9 8 6 11 11 C 1.38947 * 120.00164 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00279 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99987 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47257 * 89.99471 * 13 11 9 15 15 H 1.48497 * 109.47188 * 210.00025 * 13 11 9 16 16 H 1.48500 * 109.46835 * 329.99572 * 13 11 9 17 17 C 1.55448 * 110.70643 * 123.31007 * 2 1 3 18 18 C 1.54905 * 101.45165 * 82.89305 * 17 2 1 19 19 N 1.47419 * 104.92834 * 37.00468 * 18 17 2 20 20 C 1.34780 * 125.65139 * 155.80015 * 19 18 17 21 21 O 1.21279 * 120.00109 * 180.02562 * 20 19 18 22 22 C 1.50704 * 119.99729 * 0.02562 * 20 19 18 23 23 C 1.54635 * 111.03708 * 292.02932 * 22 20 19 24 24 C 1.51102 * 104.72275 * 217.33299 * 23 22 20 25 25 C 1.30526 * 111.10542 * 16.43856 * 24 23 22 26 26 C 1.51106 * 111.10288 * 359.97438 * 25 24 23 27 27 C 1.47026 * 108.70576 * 335.81449 * 19 18 17 28 28 H 1.09005 * 109.46580 * 183.14440 * 1 2 3 29 29 H 1.08996 * 109.47143 * 303.13764 * 1 2 3 30 30 H 1.08996 * 109.47074 * 63.14497 * 1 2 3 31 31 H 1.08995 * 109.47529 * 176.85784 * 3 2 1 32 32 H 1.09000 * 109.47257 * 296.85539 * 3 2 1 33 33 H 1.00897 * 110.99457 * 303.95847 * 4 3 2 34 34 H 1.09001 * 109.47056 * 299.99509 * 5 4 3 35 35 H 1.08997 * 109.47203 * 60.00177 * 5 4 3 36 36 H 0.97002 * 120.00277 * 0.02562 * 8 6 5 37 37 H 0.96996 * 120.00323 * 180.02562 * 12 11 9 38 38 H 1.09002 * 111.11560 * 324.83621 * 17 2 1 39 39 H 1.09004 * 111.00873 * 200.90029 * 17 2 1 40 40 H 1.09002 * 110.36692 * 278.10842 * 18 17 2 41 41 H 1.08995 * 110.36664 * 155.89643 * 18 17 2 42 42 H 1.09001 * 110.91182 * 56.03838 * 22 20 19 43 43 H 1.08998 * 110.38674 * 336.14631 * 23 22 20 44 44 H 1.09003 * 110.38830 * 98.52330 * 23 22 20 45 45 H 1.08000 * 124.44677 * 196.40917 * 24 23 22 46 46 H 1.07994 * 124.44861 * 179.97438 * 25 24 23 47 47 H 1.09003 * 110.38509 * 224.75653 * 26 25 24 48 48 H 1.08998 * 110.48365 * 102.42844 * 26 25 24 49 49 H 1.08998 * 109.88266 * 120.47537 * 27 19 18 50 50 H 1.09000 * 109.88221 * 241.64354 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 7 1.5333 2.1570 1.1597 5 6 2.0304 3.5389 1.1921 6 6 1.4609 4.2494 2.3930 7 8 0.7141 3.6625 3.1473 8 7 1.7816 5.5371 2.6288 9 6 1.2631 6.1837 3.7209 10 1 0.5982 5.6611 4.3925 11 6 1.5941 7.5111 3.9643 12 7 1.0976 8.1307 5.0114 13 14 2.7449 8.4148 2.8031 14 1 1.9528 9.0681 1.7302 15 1 3.5006 9.4462 3.5583 16 1 3.6961 7.4486 2.1976 17 6 2.0796 -0.7985 1.2152 18 6 2.0127 -2.2520 0.6838 19 7 2.3717 -2.1518 -0.7425 20 6 2.8861 -3.1449 -1.4948 21 8 3.1453 -2.9486 -2.6632 22 6 3.1393 -4.4991 -0.8839 23 6 4.2826 -4.4344 0.1553 24 6 5.0347 -5.7331 -0.0199 25 6 4.7327 -6.3017 -1.1553 26 6 3.7282 -5.4772 -1.9264 27 6 2.0761 -0.7891 -1.2086 28 1 -0.3633 -1.0262 0.0564 29 1 -0.3633 0.5618 0.8605 30 1 -0.3633 0.4642 -0.9168 31 1 3.1576 1.4102 0.0563 32 1 1.7629 1.9354 -0.9168 33 1 0.5246 2.1356 1.1647 34 1 3.1184 3.5323 1.2566 35 1 1.7233 4.0570 0.2836 36 1 2.3785 6.0067 2.0253 37 1 1.3283 9.0574 5.1811 38 1 1.4409 -0.6723 2.0894 39 1 3.1070 -0.5113 1.4391 40 1 1.0040 -2.6502 0.7940 41 1 2.7283 -2.8823 1.2117 42 1 2.2288 -4.9021 -0.4403 43 1 4.9357 -3.5865 -0.0511 44 1 3.8754 -4.3645 1.1640 45 1 5.7311 -6.1376 0.6997 46 1 5.1463 -7.2384 -1.4986 47 1 2.9446 -6.1165 -2.3332 48 1 4.2215 -4.9262 -2.7272 49 1 2.9869 -0.3179 -1.5780 50 1 1.3264 -0.8221 -1.9991 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484086677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:30 Heat of formation + Delta-G solvation = -46.620457 kcal Electronic energy + Delta-G solvation = -28681.978800 eV Core-core repulsion = 24709.336545 eV Total energy + Delta-G solvation = -3972.642254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.90063 -39.25124 -38.39680 -37.54804 -35.59963 -33.97474 -32.76159 -31.66265 -30.14440 -29.83331 -28.60400 -27.64866 -27.02315 -25.01737 -23.68213 -22.92743 -21.89974 -19.64483 -19.45649 -19.22284 -19.01510 -18.34322 -17.45446 -16.63974 -16.55417 -15.89847 -15.69610 -15.52900 -15.02205 -14.83598 -14.55049 -14.23992 -13.76474 -13.48116 -13.43192 -13.25569 -13.15304 -12.93261 -12.73147 -12.64476 -12.49388 -12.31366 -12.17408 -12.08874 -12.04180 -11.78358 -11.67197 -11.64013 -11.48769 -11.18562 -11.02189 -10.80719 -10.72315 -10.60879 -10.06706 -9.99130 -9.58936 -9.29871 -8.92146 -8.61038 -8.21802 -8.15938 -6.32790 -3.84309 1.84863 2.32819 2.64905 3.01495 3.05405 3.13975 3.72265 3.88773 4.03937 4.08751 4.12642 4.31351 4.33201 4.48082 4.62634 4.72698 4.83650 4.87980 4.91929 4.95928 5.06290 5.13526 5.18666 5.20627 5.30128 5.35924 5.40080 5.42941 5.46196 5.50944 5.58482 5.61622 5.66632 5.69065 5.76614 5.78903 5.80874 5.90950 5.92262 6.03034 6.05181 6.12288 6.17706 6.45543 7.04263 7.21973 7.53732 7.56732 7.87081 8.12671 8.57947 8.93189 9.40752 9.80744 10.80275 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025903 B = 0.001846 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.705527 B =15160.997593 C =15245.517453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.069 4.069 3 C 0.074 3.926 4 N -0.665 5.665 5 C 0.047 3.953 6 C 0.450 3.550 7 O -0.565 6.565 8 N -0.591 5.591 9 C -0.305 4.305 10 H 0.120 0.880 11 C 0.041 3.959 12 N -0.881 5.881 13 Si 0.880 3.120 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.269 1.269 17 C -0.109 4.109 18 C 0.090 3.910 19 N -0.614 5.614 20 C 0.537 3.463 21 O -0.541 6.541 22 C -0.112 4.112 23 C -0.089 4.089 24 C -0.170 4.170 25 C -0.162 4.162 26 C -0.089 4.089 27 C 0.117 3.883 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.031 0.969 33 H 0.351 0.649 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.370 0.630 37 H 0.273 0.727 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.074 0.926 48 H 0.095 0.905 49 H 0.069 0.931 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.585 -25.050 -13.364 28.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.070 4.070 3 C -0.056 4.056 4 N -0.299 5.299 5 C -0.085 4.085 6 C 0.236 3.764 7 O -0.447 6.447 8 N -0.230 5.230 9 C -0.434 4.434 10 H 0.137 0.863 11 C -0.162 4.162 12 N -0.521 5.521 13 Si 0.706 3.294 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.195 1.195 17 C -0.147 4.147 18 C -0.033 4.033 19 N -0.347 5.347 20 C 0.326 3.674 21 O -0.419 6.419 22 C -0.133 4.133 23 C -0.126 4.126 24 C -0.188 4.188 25 C -0.179 4.179 26 C -0.126 4.126 27 C -0.006 4.006 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.172 0.828 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.122 0.878 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.146 0.854 46 H 0.145 0.855 47 H 0.093 0.907 48 H 0.113 0.887 49 H 0.087 0.913 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.687 -25.420 -12.957 29.093 hybrid contribution 0.449 1.347 -1.456 2.034 sum 6.136 -24.072 -14.414 28.721 Atomic orbital electron populations 1.21878 0.93293 1.02288 1.02618 1.21622 0.96303 0.94637 0.94428 1.21906 0.99906 0.91949 0.91835 1.60098 1.15327 1.13278 1.41208 1.21704 1.00855 0.89128 0.96853 1.19702 0.86005 0.82471 0.88245 1.90559 1.38997 1.65768 1.49374 1.42214 1.44199 1.10801 1.25788 1.19429 1.26810 0.94719 1.02442 0.86275 1.25040 0.97879 0.96422 0.96813 1.69618 1.43796 1.12057 1.26630 0.86673 0.81114 0.80446 0.81164 1.19667 1.20163 1.19477 1.22814 1.02832 0.91420 0.97641 1.22599 1.00707 0.99278 0.80680 1.48452 1.63003 1.11551 1.11736 1.20060 0.76416 0.85140 0.85793 1.90696 1.52020 1.82637 1.16501 1.22128 1.00398 0.92902 0.97915 1.21352 0.95344 0.97315 0.98612 1.23221 1.00809 0.96315 0.98414 1.23313 0.99111 0.99448 0.96070 1.21299 0.97663 0.95815 0.97810 1.22001 1.00501 0.81607 0.96458 0.92350 0.90871 0.92517 0.90744 0.95112 0.82794 0.89505 0.93777 0.79692 0.91606 0.88705 0.90200 0.91199 0.90229 0.87758 0.90210 0.90121 0.85442 0.85512 0.90718 0.88711 0.91265 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.12 37.16 0.30 -0.97 16 2 C -0.07 -0.63 0.71 -152.52 -0.11 -0.74 16 3 C 0.07 0.78 4.58 -3.82 -0.02 0.77 16 4 N -0.67 -9.33 5.90 -115.06 -0.68 -10.01 16 5 C 0.05 0.75 6.17 -4.98 -0.03 0.72 16 6 C 0.45 9.91 7.82 -10.98 -0.09 9.83 16 7 O -0.57 -14.70 15.78 5.55 0.09 -14.61 16 8 N -0.59 -13.82 5.09 -10.96 -0.06 -13.88 16 9 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 10 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 11 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 12 N -0.88 -25.54 13.96 55.50 0.77 -24.76 16 13 Si 0.88 19.19 27.74 -169.99 -4.71 14.47 16 14 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.27 -5.35 6.52 56.52 0.37 -4.99 16 17 C -0.11 -0.95 5.87 -24.43 -0.14 -1.09 16 18 C 0.09 0.66 6.32 -2.53 -0.02 0.64 16 19 N -0.61 -5.76 3.33 -170.53 -0.57 -6.33 16 20 C 0.54 5.77 7.10 -10.98 -0.08 5.69 16 21 O -0.54 -7.80 15.83 5.56 0.09 -7.71 16 22 C -0.11 -0.88 2.88 -90.06 -0.26 -1.14 16 23 C -0.09 -0.61 5.35 -26.83 -0.14 -0.75 16 24 C -0.17 -1.11 10.77 -35.70 -0.38 -1.49 16 25 C -0.16 -1.09 10.78 -35.69 -0.38 -1.48 16 26 C -0.09 -0.71 6.18 -26.84 -0.17 -0.88 16 27 C 0.12 1.13 6.04 -3.06 -0.02 1.11 16 28 H 0.06 0.47 7.41 -51.93 -0.38 0.09 16 29 H 0.07 0.73 6.48 -51.93 -0.34 0.40 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.35 5.13 6.41 -39.29 -0.25 4.87 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.37 7.61 5.76 -40.82 -0.24 7.38 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 39 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 40 H 0.07 0.46 7.69 -51.93 -0.40 0.06 16 41 H 0.08 0.47 5.45 -51.93 -0.28 0.19 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.63 7.88 -51.93 -0.41 0.22 16 44 H 0.08 0.43 6.80 -51.93 -0.35 0.08 16 45 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 46 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.09 0.94 6.95 -51.93 -0.36 0.58 16 49 H 0.07 0.71 7.82 -51.93 -0.41 0.31 16 50 H 0.07 0.69 7.84 -51.93 -0.41 0.29 16 LS Contribution 394.07 15.07 5.94 5.94 Total: -1.00 -33.68 394.07 -8.93 -42.61 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -8.02 Total: 11.73 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -1.78 Total: 2.55 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.53 Total: -54.98 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: 0.18 Total: -22.32 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.47 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.68 -8.93 -42.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484086677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.011 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds