Wall clock time and date at job start Tue Mar 31 2020 19:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 110.63881 * 2 1 4 4 N 1.46905 * 109.47506 * 56.85696 * 3 2 1 5 5 C 1.46896 * 111.00351 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46828 * 180.02562 * 5 4 3 7 7 O 1.21294 * 120.00269 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99635 * 179.97438 * 6 5 4 9 9 C 1.37099 * 119.99952 * 179.97438 * 8 6 5 10 10 H 1.08001 * 120.00045 * 0.02562 * 9 8 6 11 11 C 1.38947 * 120.00164 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00279 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99987 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47257 * 89.99471 * 13 11 9 15 15 H 1.48497 * 109.47188 * 210.00025 * 13 11 9 16 16 H 1.48500 * 109.46835 * 329.99572 * 13 11 9 17 17 C 1.55448 * 110.70643 * 123.31007 * 2 1 3 18 18 C 1.54905 * 101.45165 * 82.89305 * 17 2 1 19 19 N 1.47419 * 104.92834 * 37.00468 * 18 17 2 20 20 C 1.34780 * 125.65139 * 155.80015 * 19 18 17 21 21 O 1.21279 * 120.00109 * 180.02562 * 20 19 18 22 22 C 1.50704 * 119.99729 * 0.02562 * 20 19 18 23 23 C 1.54635 * 111.03708 * 292.02932 * 22 20 19 24 24 C 1.51102 * 104.72275 * 217.33299 * 23 22 20 25 25 C 1.30526 * 111.10542 * 16.43856 * 24 23 22 26 26 C 1.51106 * 111.10288 * 359.97438 * 25 24 23 27 27 C 1.47026 * 108.70576 * 335.81449 * 19 18 17 28 28 H 1.09005 * 109.46580 * 183.14440 * 1 2 3 29 29 H 1.08996 * 109.47143 * 303.13764 * 1 2 3 30 30 H 1.08996 * 109.47074 * 63.14497 * 1 2 3 31 31 H 1.08995 * 109.47529 * 176.85784 * 3 2 1 32 32 H 1.09000 * 109.47257 * 296.85539 * 3 2 1 33 33 H 1.00897 * 110.99457 * 303.95847 * 4 3 2 34 34 H 1.09001 * 109.47056 * 299.99509 * 5 4 3 35 35 H 1.08997 * 109.47203 * 60.00177 * 5 4 3 36 36 H 0.97002 * 120.00277 * 0.02562 * 8 6 5 37 37 H 0.96996 * 120.00323 * 180.02562 * 12 11 9 38 38 H 1.09002 * 111.11560 * 324.83621 * 17 2 1 39 39 H 1.09004 * 111.00873 * 200.90029 * 17 2 1 40 40 H 1.09002 * 110.36692 * 278.10842 * 18 17 2 41 41 H 1.08995 * 110.36664 * 155.89643 * 18 17 2 42 42 H 1.09001 * 110.91182 * 56.03838 * 22 20 19 43 43 H 1.08998 * 110.38674 * 336.14631 * 23 22 20 44 44 H 1.09003 * 110.38830 * 98.52330 * 23 22 20 45 45 H 1.08000 * 124.44677 * 196.40917 * 24 23 22 46 46 H 1.07994 * 124.44861 * 179.97438 * 25 24 23 47 47 H 1.09003 * 110.38509 * 224.75653 * 26 25 24 48 48 H 1.08998 * 110.48365 * 102.42844 * 26 25 24 49 49 H 1.08998 * 109.88266 * 120.47537 * 27 19 18 50 50 H 1.09000 * 109.88221 * 241.64354 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 7 1.5333 2.1570 1.1597 5 6 2.0304 3.5389 1.1921 6 6 1.4609 4.2494 2.3930 7 8 0.7141 3.6625 3.1473 8 7 1.7816 5.5371 2.6288 9 6 1.2631 6.1837 3.7209 10 1 0.5982 5.6611 4.3925 11 6 1.5941 7.5111 3.9643 12 7 1.0976 8.1307 5.0114 13 14 2.7449 8.4148 2.8031 14 1 1.9528 9.0681 1.7302 15 1 3.5006 9.4462 3.5583 16 1 3.6961 7.4486 2.1976 17 6 2.0796 -0.7985 1.2152 18 6 2.0127 -2.2520 0.6838 19 7 2.3717 -2.1518 -0.7425 20 6 2.8861 -3.1449 -1.4948 21 8 3.1453 -2.9486 -2.6632 22 6 3.1393 -4.4991 -0.8839 23 6 4.2826 -4.4344 0.1553 24 6 5.0347 -5.7331 -0.0199 25 6 4.7327 -6.3017 -1.1553 26 6 3.7282 -5.4772 -1.9264 27 6 2.0761 -0.7891 -1.2086 28 1 -0.3633 -1.0262 0.0564 29 1 -0.3633 0.5618 0.8605 30 1 -0.3633 0.4642 -0.9168 31 1 3.1576 1.4102 0.0563 32 1 1.7629 1.9354 -0.9168 33 1 0.5246 2.1356 1.1647 34 1 3.1184 3.5323 1.2566 35 1 1.7233 4.0570 0.2836 36 1 2.3785 6.0067 2.0253 37 1 1.3283 9.0574 5.1811 38 1 1.4409 -0.6723 2.0894 39 1 3.1070 -0.5113 1.4391 40 1 1.0040 -2.6502 0.7940 41 1 2.7283 -2.8823 1.2117 42 1 2.2288 -4.9021 -0.4403 43 1 4.9357 -3.5865 -0.0511 44 1 3.8754 -4.3645 1.1640 45 1 5.7311 -6.1376 0.6997 46 1 5.1463 -7.2384 -1.4986 47 1 2.9446 -6.1165 -2.3332 48 1 4.2215 -4.9262 -2.7272 49 1 2.9869 -0.3179 -1.5780 50 1 1.3264 -0.8221 -1.9991 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484086677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:29 Heat of formation + Delta-G solvation = -70.712229 kcal Electronic energy + Delta-G solvation = -28683.023497 eV Core-core repulsion = 24709.336545 eV Total energy + Delta-G solvation = -3973.686952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.65060 -40.35761 -39.76836 -38.30827 -36.70853 -35.87344 -33.84250 -33.59957 -30.76704 -30.57748 -29.18755 -28.88833 -27.83620 -26.49131 -24.80101 -23.88058 -22.55650 -21.28922 -20.44966 -20.19156 -19.85672 -19.65006 -18.24456 -17.75551 -17.23564 -17.16683 -16.88741 -16.61666 -16.29994 -15.96545 -15.54575 -15.26475 -15.06484 -14.96385 -14.49068 -14.34271 -14.10894 -13.89890 -13.79239 -13.71680 -13.41572 -13.23708 -13.16356 -12.98082 -12.88073 -12.79100 -12.68700 -12.45975 -12.39699 -12.20900 -12.07124 -11.98524 -11.80259 -11.58583 -11.50348 -11.44290 -10.91396 -10.40414 -10.23448 -9.81526 -9.69751 -9.28880 -8.40304 -6.00885 1.31070 1.35187 1.35865 1.44879 1.53315 1.91169 1.97713 2.23537 2.72604 3.16484 3.25882 3.42932 3.55164 3.61438 3.71664 3.75958 3.90426 4.16269 4.16484 4.23451 4.25034 4.34845 4.36935 4.47434 4.54271 4.55096 4.62046 4.62527 4.68900 4.75074 4.75954 4.82003 4.88974 4.93376 4.97642 5.04631 5.08118 5.13617 5.18878 5.31368 5.33518 5.43877 5.53629 5.61689 5.91429 5.97597 6.05010 6.41177 6.47480 6.61009 6.89549 7.07296 7.41516 7.97872 8.77222 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025903 B = 0.001846 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.705527 B =15160.997593 C =15245.517453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C 0.077 3.923 4 N -0.678 5.678 5 C 0.061 3.939 6 C 0.450 3.550 7 O -0.611 6.611 8 N -0.592 5.592 9 C -0.327 4.327 10 H 0.056 0.944 11 C -0.015 4.015 12 N -0.934 5.934 13 Si 0.964 3.036 14 H -0.258 1.258 15 H -0.276 1.276 16 H -0.232 1.232 17 C -0.108 4.108 18 C 0.093 3.907 19 N -0.612 5.612 20 C 0.532 3.468 21 O -0.586 6.586 22 C -0.109 4.109 23 C -0.088 4.088 24 C -0.169 4.169 25 C -0.169 4.169 26 C -0.092 4.092 27 C 0.119 3.881 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.346 0.654 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.389 0.611 37 H 0.279 0.721 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.124 0.876 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.145 0.855 46 H 0.142 0.858 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.062 0.938 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.409 -25.938 -15.054 30.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.062 4.062 3 C -0.052 4.052 4 N -0.311 5.311 5 C -0.072 4.072 6 C 0.238 3.762 7 O -0.496 6.496 8 N -0.234 5.234 9 C -0.457 4.457 10 H 0.075 0.925 11 C -0.214 4.214 12 N -0.575 5.575 13 Si 0.784 3.216 14 H -0.182 1.182 15 H -0.201 1.201 16 H -0.155 1.155 17 C -0.146 4.146 18 C -0.029 4.029 19 N -0.344 5.344 20 C 0.323 3.677 21 O -0.467 6.467 22 C -0.130 4.130 23 C -0.125 4.125 24 C -0.187 4.187 25 C -0.187 4.187 26 C -0.130 4.130 27 C -0.004 4.004 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.166 0.834 34 H 0.130 0.870 35 H 0.093 0.907 36 H 0.225 0.775 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.116 0.884 42 H 0.142 0.858 43 H 0.085 0.915 44 H 0.119 0.881 45 H 0.163 0.837 46 H 0.159 0.841 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.514 -26.332 -14.647 31.054 hybrid contribution -0.218 1.541 -0.866 1.781 sum 7.296 -24.791 -15.513 30.141 Atomic orbital electron populations 1.21833 0.93022 1.02656 1.02176 1.21525 0.96380 0.93913 0.94423 1.21944 1.00113 0.92235 0.90909 1.60090 1.15146 1.12579 1.43318 1.21625 1.01761 0.89530 0.94259 1.20975 0.84297 0.81856 0.89108 1.90540 1.40796 1.66750 1.51485 1.42051 1.44878 1.11442 1.25058 1.19011 1.27427 0.95528 1.03702 0.92539 1.26097 0.99641 0.96829 0.98813 1.69800 1.45711 1.12789 1.29212 0.85381 0.78754 0.79070 0.78418 1.18233 1.20146 1.15484 1.22771 1.02281 0.92322 0.97208 1.22707 1.02060 0.98718 0.79366 1.48524 1.62198 1.11197 1.12508 1.20582 0.75662 0.86170 0.85329 1.90673 1.54006 1.83508 1.18494 1.22171 1.01646 0.91102 0.98061 1.21373 0.94817 0.97127 0.99198 1.23419 1.00738 0.95890 0.98637 1.23421 0.99101 1.00089 0.96072 1.21294 0.98177 0.95973 0.97507 1.21938 1.00067 0.81964 0.96471 0.91505 0.92158 0.92159 0.90141 0.93959 0.83359 0.87004 0.90725 0.77541 0.91197 0.89332 0.90711 0.89808 0.88419 0.85785 0.91455 0.88132 0.83718 0.84063 0.90102 0.91266 0.91925 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.12 71.98 0.58 -1.70 16 2 C -0.06 -1.02 0.71 -50.89 -0.04 -1.05 16 3 C 0.08 1.45 4.58 86.30 0.40 1.84 16 4 N -0.68 -17.77 5.90 -517.94 -3.06 -20.83 16 5 C 0.06 1.74 6.17 85.56 0.53 2.26 16 6 C 0.45 19.59 7.82 87.66 0.69 20.27 16 7 O -0.61 -32.71 15.78 -3.07 -0.05 -32.76 16 8 N -0.59 -27.35 5.09 -306.98 -1.56 -28.92 16 9 C -0.33 -18.95 10.16 84.04 0.85 -18.09 16 10 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 11 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 12 N -0.93 -55.96 13.96 21.66 0.30 -55.66 16 13 Si 0.96 38.41 27.74 68.60 1.90 40.31 16 14 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 15 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 16 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 17 C -0.11 -1.69 5.87 32.09 0.19 -1.50 16 18 C 0.09 1.14 6.32 86.85 0.55 1.69 16 19 N -0.61 -10.60 3.33 -811.81 -2.70 -13.30 16 20 C 0.53 11.02 7.10 87.66 0.62 11.64 16 21 O -0.59 -17.11 15.83 -3.03 -0.05 -17.16 16 22 C -0.11 -1.54 2.88 -10.43 -0.03 -1.57 16 23 C -0.09 -1.01 5.35 30.53 0.16 -0.85 16 24 C -0.17 -1.83 10.77 26.26 0.28 -1.55 16 25 C -0.17 -2.02 10.78 26.26 0.28 -1.73 16 26 C -0.09 -1.41 6.18 30.53 0.19 -1.23 16 27 C 0.12 2.14 6.04 86.73 0.52 2.67 16 28 H 0.07 0.97 7.41 -2.38 -0.02 0.95 16 29 H 0.06 1.17 6.48 -2.39 -0.02 1.15 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.45 8.12 -2.39 -0.02 1.43 16 32 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.35 9.77 6.41 -89.70 -0.57 9.19 16 34 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.39 14.86 5.76 -92.71 -0.53 14.33 16 37 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.09 1.54 8.05 -2.39 -0.02 1.52 16 39 H 0.07 1.27 8.04 -2.38 -0.02 1.25 16 40 H 0.08 0.85 7.69 -2.39 -0.02 0.84 16 41 H 0.10 0.87 5.45 -2.39 -0.01 0.86 16 42 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.07 0.97 7.88 -2.39 -0.02 0.95 16 44 H 0.10 0.75 6.80 -2.39 -0.02 0.73 16 45 H 0.15 1.06 8.06 -2.91 -0.02 1.03 16 46 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 47 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 48 H 0.07 1.43 6.95 -2.39 -0.02 1.41 16 49 H 0.06 1.22 7.82 -2.39 -0.02 1.20 16 50 H 0.06 1.23 7.84 -2.39 -0.02 1.21 16 Total: -1.00 -78.86 394.07 0.83 -78.03 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: -0.21 Total: 39.55 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 6.25 Total: 10.74 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -7.02 Total: -118.70 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -0.10 Total: -49.92 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 1.90 Total: 40.31 kcal Total: -78.86 0.83 -78.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484086677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.316 kcal (2) G-P(sol) polarization free energy of solvation -78.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds