Wall clock time and date at job start Tue Mar 31 2020 19:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 110.88646 * 2 1 4 4 N 1.46897 * 109.47203 * 303.88359 * 3 2 1 5 5 C 1.46909 * 110.99869 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46973 * 179.97438 * 5 4 3 7 7 O 1.21296 * 120.00027 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99719 * 179.97438 * 6 5 4 9 9 C 1.37102 * 119.99835 * 180.02562 * 8 6 5 10 10 H 1.08003 * 119.99742 * 0.02562 * 9 8 6 11 11 C 1.38945 * 120.00324 * 180.02562 * 9 8 6 12 12 N 1.31412 * 119.99798 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00484 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46870 * 90.00090 * 13 11 9 15 15 H 1.48501 * 109.47204 * 210.00114 * 13 11 9 16 16 H 1.48498 * 109.46890 * 330.00376 * 13 11 9 17 17 C 1.55155 * 111.00164 * 236.07850 * 2 1 3 18 18 C 1.54330 * 102.94292 * 277.42636 * 17 2 1 19 19 N 1.47026 * 107.26840 * 337.81024 * 18 17 2 20 20 C 1.34780 * 125.64391 * 178.97562 * 19 18 17 21 21 O 1.21276 * 119.99621 * 179.97438 * 20 19 18 22 22 C 1.50700 * 120.00219 * 359.97438 * 20 19 18 23 23 C 1.54640 * 111.03594 * 295.33157 * 22 20 19 24 24 C 1.51165 * 104.69538 * 217.36038 * 23 22 20 25 25 C 1.30524 * 111.11699 * 16.38501 * 24 23 22 26 26 C 1.51106 * 111.10522 * 0.03017 * 25 24 23 27 27 C 1.47420 * 108.70428 * 358.94103 * 19 18 17 28 28 H 1.08995 * 109.47451 * 296.11814 * 1 2 3 29 29 H 1.08998 * 109.47120 * 56.11818 * 1 2 3 30 30 H 1.08994 * 109.47104 * 176.11838 * 1 2 3 31 31 H 1.09008 * 109.46901 * 63.88145 * 3 2 1 32 32 H 1.09000 * 109.47423 * 183.87787 * 3 2 1 33 33 H 1.00900 * 110.99928 * 303.94775 * 4 3 2 34 34 H 1.08994 * 109.46846 * 299.99751 * 5 4 3 35 35 H 1.09003 * 109.46948 * 60.00073 * 5 4 3 36 36 H 0.96993 * 120.00459 * 0.02562 * 8 6 5 37 37 H 0.97002 * 120.00094 * 180.02562 * 12 11 9 38 38 H 1.08998 * 110.71769 * 159.06757 * 17 2 1 39 39 H 1.08991 * 110.72382 * 35.79154 * 17 2 1 40 40 H 1.08998 * 109.88224 * 218.39343 * 18 17 2 41 41 H 1.08998 * 109.88221 * 97.22736 * 18 17 2 42 42 H 1.08992 * 110.91148 * 59.29799 * 22 20 19 43 43 H 1.09004 * 110.38867 * 336.15152 * 23 22 20 44 44 H 1.09007 * 110.38141 * 98.52072 * 23 22 20 45 45 H 1.07993 * 124.43114 * 196.40511 * 24 23 22 46 46 H 1.07999 * 124.44823 * 180.02562 * 25 24 23 47 47 H 1.09000 * 110.38569 * 224.75092 * 26 25 24 48 48 H 1.09001 * 110.38400 * 102.37783 * 26 25 24 49 49 H 1.08997 * 110.36858 * 142.96748 * 27 19 18 50 50 H 1.08997 * 110.36396 * 265.17736 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 7 1.5287 2.1622 -1.1498 5 6 2.0314 3.5422 -1.1819 6 6 1.4506 4.2607 -2.3725 7 8 0.6922 3.6805 -3.1204 8 7 1.7732 5.5484 -2.6056 9 6 1.2444 6.2023 -3.6885 10 1 0.5691 5.6856 -4.3544 11 6 1.5774 7.5296 -3.9292 12 7 2.3995 8.1581 -3.1193 13 14 0.8575 8.4203 -5.4050 14 1 -0.4198 9.0703 -5.0162 15 1 1.8154 9.4530 -5.8755 16 1 0.6047 7.4456 -6.4965 17 6 2.0861 -0.8083 -1.2020 18 6 2.0285 -2.2649 -0.6952 19 7 2.0139 -2.2156 0.7741 20 6 1.9471 -3.2824 1.5952 21 8 1.9419 -3.1228 2.7974 22 6 1.8787 -4.6734 1.0194 23 6 0.5701 -4.8803 0.2218 24 6 0.1634 -6.3063 0.5155 25 6 0.7944 -6.7696 1.5599 26 6 1.7267 -5.7302 2.1378 27 6 2.0852 -0.8062 1.2006 28 1 -0.3634 0.4524 0.9227 29 1 -0.3633 0.5729 -0.8531 30 1 -0.3633 -1.0253 -0.0696 31 1 1.7823 1.9302 0.9228 32 1 3.1629 1.4034 -0.0695 33 1 1.7320 1.6828 -2.0140 34 1 1.7375 4.0573 -0.2674 35 1 3.1186 3.5311 -1.2595 36 1 2.3794 6.0125 -2.0074 37 1 2.6316 9.0848 -3.2871 38 1 3.1132 -0.5165 -1.4207 39 1 1.4524 -0.6799 -2.0793 40 1 2.9063 -2.8120 -1.0391 41 1 1.1218 -2.7484 -1.0590 42 1 2.7513 -4.8814 0.4003 43 1 -0.1980 -4.1878 0.5661 44 1 0.7509 -4.7483 -0.8451 45 1 -0.5548 -6.8679 -0.0632 46 1 0.6669 -7.7651 1.9588 47 1 2.6932 -6.1759 2.3730 48 1 1.2882 -5.2802 3.0285 49 1 1.4672 -0.6454 2.0839 50 1 3.1179 -0.5235 1.4045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484086678.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:35 Heat of formation + Delta-G solvation = -55.556317 kcal Electronic energy + Delta-G solvation = -28661.442608 eV Core-core repulsion = 24688.412865 eV Total energy + Delta-G solvation = -3973.029742 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.89632 -39.19187 -38.21602 -37.51637 -35.48386 -33.91608 -32.66614 -31.21631 -30.10871 -29.89823 -28.58922 -27.47221 -26.84945 -24.96358 -23.72331 -23.13560 -21.82579 -19.66471 -19.38460 -19.15591 -18.93104 -17.90983 -17.39239 -16.65575 -16.37775 -15.98378 -15.73211 -15.46364 -14.95105 -14.53936 -14.32666 -14.06980 -13.86921 -13.72205 -13.44180 -13.28174 -13.19937 -12.73574 -12.67159 -12.59034 -12.35972 -12.27955 -12.09012 -11.97595 -11.79234 -11.66258 -11.56047 -11.52306 -11.43205 -11.05598 -10.91961 -10.80241 -10.66580 -10.40694 -10.23120 -10.04660 -9.52120 -9.29344 -8.89558 -8.47919 -8.07307 -7.97104 -6.42936 -3.83866 1.85888 2.34332 2.66135 3.16941 3.25658 3.31189 3.89195 3.93069 4.04899 4.12587 4.21904 4.27967 4.34650 4.54636 4.69340 4.76331 4.87175 4.94666 5.00891 5.04532 5.14902 5.16756 5.23545 5.24653 5.30426 5.35456 5.44601 5.46628 5.53917 5.57571 5.61053 5.66604 5.71044 5.77752 5.78640 5.90414 5.94576 5.97017 6.06621 6.10216 6.13747 6.25102 6.44384 6.46492 7.17319 7.23513 7.53923 7.63162 7.88328 8.05036 8.59851 9.16586 9.53132 10.04340 10.74737 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.035471 B = 0.001755 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.190332 B =15947.163124 C =16400.803236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.068 4.068 3 C 0.075 3.925 4 N -0.664 5.664 5 C 0.050 3.950 6 C 0.441 3.559 7 O -0.584 6.584 8 N -0.564 5.564 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.901 5.901 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 C -0.129 4.129 18 C 0.100 3.900 19 N -0.613 5.613 20 C 0.538 3.462 21 O -0.540 6.540 22 C -0.112 4.112 23 C -0.089 4.089 24 C -0.170 4.170 25 C -0.162 4.162 26 C -0.088 4.088 27 C 0.115 3.885 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.030 0.970 33 H 0.348 0.652 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.074 0.926 48 H 0.094 0.906 49 H 0.080 0.920 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 -25.477 8.205 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.069 4.069 3 C -0.056 4.056 4 N -0.296 5.296 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.468 6.468 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C -0.166 4.166 18 C -0.023 4.023 19 N -0.347 5.347 20 C 0.327 3.673 21 O -0.417 6.417 22 C -0.133 4.133 23 C -0.126 4.126 24 C -0.188 4.188 25 C -0.180 4.180 26 C -0.125 4.125 27 C -0.008 4.008 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.168 0.832 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.123 0.877 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.093 0.907 48 H 0.112 0.888 49 H 0.098 0.902 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.629 -25.466 8.699 26.918 hybrid contribution 1.079 0.705 -0.685 1.460 sum 1.709 -24.761 8.014 26.082 Atomic orbital electron populations 1.21638 0.92287 1.00989 1.03507 1.21742 0.97360 0.93972 0.93810 1.21843 0.95948 0.92076 0.95683 1.60036 1.62106 1.01634 1.05832 1.21673 0.97021 0.90183 0.99346 1.19804 0.86313 0.83298 0.87951 1.90518 1.39328 1.66927 1.50034 1.41867 1.42524 1.09609 1.26031 1.19702 1.25468 0.94027 1.03738 0.87917 1.25262 0.96899 0.96771 0.99009 1.69612 1.34615 1.12265 1.37787 0.85855 0.78473 0.78941 0.80999 1.20389 1.20949 1.19444 1.22810 1.02300 0.92814 0.98719 1.22150 1.01811 0.98539 0.79800 1.48417 1.72873 1.06295 1.07110 1.20036 0.75748 0.85490 0.86051 1.90700 1.50330 1.86063 1.14625 1.22131 1.00360 0.92024 0.98828 1.21361 0.95397 0.95628 1.00257 1.23231 1.00722 0.96037 0.98770 1.23318 0.98437 0.99120 0.97103 1.21293 0.99656 0.93321 0.98231 1.22302 1.01079 0.79690 0.97747 0.92701 0.90057 0.93585 0.90646 0.95199 0.83220 0.89568 0.93932 0.77463 0.91873 0.90522 0.88992 0.91409 0.90906 0.87746 0.90216 0.90206 0.85476 0.85525 0.90701 0.88774 0.90152 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 8.46 37.16 0.31 -1.05 16 2 C -0.07 -0.66 0.73 -152.36 -0.11 -0.77 16 3 C 0.07 0.83 4.73 -3.83 -0.02 0.81 16 4 N -0.66 -9.78 5.24 -115.05 -0.60 -10.38 16 5 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 6 C 0.44 10.13 7.82 -10.99 -0.09 10.05 16 7 O -0.58 -15.41 15.78 5.54 0.09 -15.32 16 8 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 9 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 10 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 13 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 17 C -0.13 -1.06 5.18 -24.89 -0.13 -1.19 16 18 C 0.10 0.73 5.78 -3.06 -0.02 0.71 16 19 N -0.61 -5.84 3.31 -170.52 -0.57 -6.40 16 20 C 0.54 5.85 7.12 -10.98 -0.08 5.77 16 21 O -0.54 -7.86 15.79 5.56 0.09 -7.78 16 22 C -0.11 -0.89 2.97 -90.06 -0.27 -1.16 16 23 C -0.09 -0.61 5.13 -26.79 -0.14 -0.75 16 24 C -0.17 -1.12 10.78 -35.66 -0.38 -1.50 16 25 C -0.16 -1.11 10.77 -35.69 -0.38 -1.49 16 26 C -0.09 -0.71 6.16 -26.83 -0.17 -0.88 16 27 C 0.11 1.14 5.83 -2.53 -0.01 1.13 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.03 7.48 -51.93 -0.39 0.64 16 30 H 0.05 0.46 7.80 -51.93 -0.40 0.05 16 31 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 33 H 0.35 5.25 7.71 -39.29 -0.30 4.94 16 34 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 37 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.08 0.61 7.99 -51.93 -0.42 0.20 16 39 H 0.09 0.78 8.03 -51.93 -0.42 0.36 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.47 6.37 -51.93 -0.33 0.14 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.64 7.88 -51.93 -0.41 0.23 16 44 H 0.08 0.43 7.23 -51.92 -0.38 0.06 16 45 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 46 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.09 0.95 7.01 -51.93 -0.36 0.59 16 49 H 0.08 0.90 7.95 -51.93 -0.41 0.48 16 50 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16 LS Contribution 400.21 15.07 6.03 6.03 Total: -1.00 -32.40 400.21 -9.37 -41.77 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -8.30 Total: 11.42 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -1.75 Total: 2.56 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.50 Total: -54.52 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.18 Total: -23.10 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.40 -9.37 -41.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484086678.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.790 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds