Wall clock time and date at job start Tue Mar 31 2020 19:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 110.80128 * 2 1 4 4 N 1.46906 * 109.46955 * 298.15872 * 3 2 1 5 5 C 1.46899 * 110.99945 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.46940 * 180.02562 * 5 4 3 7 7 O 1.21301 * 119.99911 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99883 * 180.02562 * 6 5 4 9 9 C 1.37099 * 119.99902 * 179.97438 * 8 6 5 10 10 H 1.08001 * 119.99902 * 359.97438 * 9 8 6 11 11 C 1.38947 * 120.00416 * 179.97438 * 9 8 6 12 12 N 1.31412 * 119.99644 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00415 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47105 * 59.99948 * 13 11 9 15 15 H 1.48502 * 109.47197 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47038 * 299.99852 * 13 11 9 17 17 C 1.54615 * 110.74535 * 236.70232 * 2 1 3 18 18 C 1.53995 * 105.04736 * 263.51853 * 17 2 1 19 19 N 1.47480 * 107.08597 * 1.29897 * 18 17 2 20 20 C 1.34782 * 127.03668 * 154.51492 * 19 18 17 21 21 O 1.21616 * 119.99521 * 3.45204 * 20 19 18 22 22 C 1.47096 * 120.00122 * 183.44492 * 20 19 18 23 23 C 1.32613 * 124.61913 * 173.35725 * 22 20 19 24 24 C 1.51116 * 110.75721 * 180.02562 * 23 22 20 25 25 C 1.54574 * 104.84393 * 343.40410 * 24 23 22 26 26 C 1.51112 * 124.62263 * 353.40280 * 22 20 19 27 27 C 1.48119 * 105.93257 * 334.78203 * 19 18 17 28 28 H 1.09005 * 109.47201 * 181.83824 * 1 2 3 29 29 H 1.08999 * 109.47531 * 301.84506 * 1 2 3 30 30 H 1.09003 * 109.47250 * 61.84027 * 1 2 3 31 31 H 1.08993 * 109.47170 * 58.15988 * 3 2 1 32 32 H 1.09002 * 109.47441 * 178.16256 * 3 2 1 33 33 H 1.00900 * 110.99821 * 303.95381 * 4 3 2 34 34 H 1.09004 * 109.46788 * 299.99876 * 5 4 3 35 35 H 1.08993 * 109.47497 * 59.99918 * 5 4 3 36 36 H 0.97000 * 119.99997 * 359.97438 * 8 6 5 37 37 H 0.96994 * 120.00548 * 179.97438 * 12 11 9 38 38 H 1.08999 * 110.32973 * 144.62085 * 17 2 1 39 39 H 1.09003 * 110.32191 * 22.40659 * 17 2 1 40 40 H 1.08998 * 109.91475 * 241.94119 * 18 17 2 41 41 H 1.09005 * 109.91714 * 120.66514 * 18 17 2 42 42 H 1.07993 * 124.62700 * 0.05953 * 23 22 20 43 43 H 1.09005 * 110.36781 * 224.56018 * 24 23 22 44 44 H 1.09001 * 110.36434 * 102.24574 * 24 23 22 45 45 H 1.08998 * 110.98717 * 143.12409 * 25 24 23 46 46 H 1.08997 * 110.98415 * 266.92974 * 25 24 23 47 47 H 1.08995 * 110.36759 * 77.71894 * 26 22 20 48 48 H 1.09003 * 110.36163 * 315.40032 * 26 22 20 49 49 H 1.08996 * 110.66125 * 157.50090 * 27 19 18 50 50 H 1.08993 * 110.66209 * 280.62364 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0733 1.4303 0.0000 4 7 1.6361 2.1201 -1.2211 5 6 2.1408 3.4993 -1.2560 6 6 1.6726 4.1736 -2.5197 7 8 0.9864 3.5651 -3.3135 8 7 2.0172 5.4527 -2.7684 9 6 1.5917 6.0660 -3.9183 10 1 0.9807 5.5242 -4.6251 11 6 1.9465 7.3848 -4.1746 12 7 2.6895 8.0443 -3.3144 13 14 1.3673 8.2203 -5.7417 14 1 -0.1173 8.2352 -5.7751 15 1 1.8778 9.6143 -5.7772 16 1 1.8816 7.4753 -6.9189 17 6 2.0776 -0.7938 -1.2085 18 6 2.3762 -2.2015 -0.6601 19 7 1.9870 -2.2038 0.7624 20 6 1.6219 -3.2695 1.5024 21 8 1.6503 -4.3846 1.0179 22 6 1.1892 -3.0838 2.8960 23 6 0.6932 -4.0435 3.6651 24 6 0.3521 -3.5083 5.0365 25 6 1.1064 -2.1626 5.1352 26 6 1.2483 -1.7733 3.6459 27 6 2.0732 -0.7945 1.2099 28 1 -0.3634 -1.0272 0.0330 29 1 -0.3634 0.5422 0.8729 30 1 -0.3634 0.4850 -0.9060 31 1 1.6955 1.9624 0.8730 32 1 3.1625 1.4052 0.0330 33 1 1.9190 1.6109 -2.0450 34 1 1.7638 4.0460 -0.3916 35 1 3.2304 3.4882 -1.2319 36 1 2.5663 5.9392 -2.1338 37 1 2.9375 8.9647 -3.4933 38 1 2.9910 -0.3315 -1.5827 39 1 1.3279 -0.8462 -1.9981 40 1 3.4402 -2.4186 -0.7542 41 1 1.7935 -2.9438 -1.2057 42 1 0.5528 -5.0681 3.3541 43 1 0.6987 -4.1950 5.8088 44 1 -0.7225 -3.3481 5.1246 45 1 0.5166 -1.4234 5.6773 46 1 2.0838 -2.2962 5.5988 47 1 0.4258 -1.1254 3.3430 48 1 2.2047 -1.2799 3.4726 49 1 1.4487 -0.6309 2.0881 50 1 3.1075 -0.5188 1.4153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484088344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:43 Heat of formation + Delta-G solvation = -47.175645 kcal Electronic energy + Delta-G solvation = -28847.541617 eV Core-core repulsion = 24874.875288 eV Total energy + Delta-G solvation = -3972.666329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.79716 -39.00562 -38.20676 -37.73184 -35.40561 -33.89863 -32.47891 -31.21593 -30.84400 -29.61057 -28.42936 -27.49559 -26.92614 -24.96025 -23.85882 -23.15768 -21.58258 -20.90421 -19.39421 -18.98538 -18.71375 -17.89906 -17.06202 -16.55680 -16.20614 -16.05343 -15.60267 -15.41329 -14.77069 -14.52683 -14.30977 -14.25234 -13.92206 -13.77903 -13.54599 -13.39695 -13.14435 -12.87248 -12.66573 -12.44606 -12.34768 -12.22581 -12.04366 -12.01898 -11.77741 -11.66144 -11.54335 -11.45895 -11.33163 -11.02475 -10.82861 -10.72639 -10.60219 -10.45210 -10.22625 -10.11537 -9.51068 -9.38891 -8.84770 -8.47504 -8.07117 -7.97012 -6.42825 -3.83702 1.05912 2.71390 3.02033 3.19333 3.25094 3.29493 3.89526 3.94796 4.03929 4.12049 4.21055 4.35717 4.43950 4.55845 4.64320 4.79310 4.85640 4.99911 5.05281 5.09283 5.11417 5.18638 5.20935 5.24526 5.27482 5.32538 5.39595 5.44078 5.52902 5.58198 5.59912 5.64713 5.70001 5.73717 5.80632 5.85599 5.94150 5.95823 6.04302 6.08515 6.15158 6.16778 6.25015 6.41526 7.17836 7.30418 7.53954 7.63231 7.93763 8.05019 8.60064 9.16720 9.53141 10.04588 10.74814 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026757 B = 0.001899 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.217332 B =14744.177902 C =15336.074548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.069 4.069 3 C 0.074 3.926 4 N -0.665 5.665 5 C 0.051 3.949 6 C 0.440 3.560 7 O -0.583 6.583 8 N -0.564 5.564 9 C -0.300 4.300 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.931 3.069 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.274 1.274 17 C -0.129 4.129 18 C 0.108 3.892 19 N -0.610 5.610 20 C 0.584 3.416 21 O -0.547 6.547 22 C -0.189 4.189 23 C -0.074 4.074 24 C -0.107 4.107 25 C -0.126 4.126 26 C -0.095 4.095 27 C 0.086 3.914 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.349 0.651 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.137 0.863 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.103 0.897 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.237 -18.494 18.218 25.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.056 4.056 4 N -0.297 5.297 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.467 6.467 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.167 4.167 18 C -0.015 4.015 19 N -0.343 5.343 20 C 0.375 3.625 21 O -0.426 6.426 22 C -0.192 4.192 23 C -0.094 4.094 24 C -0.144 4.144 25 C -0.163 4.163 26 C -0.132 4.132 27 C -0.037 4.037 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.169 0.831 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.155 0.845 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.103 0.897 48 H 0.099 0.901 49 H 0.121 0.879 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.761 -19.181 17.711 26.118 hybrid contribution 1.151 0.756 -0.661 1.528 sum 0.390 -18.425 17.050 25.106 Atomic orbital electron populations 1.21666 0.92538 1.00797 1.03401 1.21614 0.97331 0.93988 0.94145 1.21901 0.96638 0.92478 0.94590 1.60042 1.63622 1.01866 1.04217 1.21668 0.97308 0.90401 0.98822 1.19814 0.85826 0.83332 0.88459 1.90525 1.42010 1.64874 1.49339 1.41859 1.46655 1.10367 1.21146 1.19651 1.30075 0.95048 0.98160 0.87981 1.25261 0.96871 0.96599 0.99218 1.69599 1.36839 1.11791 1.36112 0.85915 0.79096 0.77880 0.81309 1.19876 1.20987 1.19933 1.22661 1.02161 0.93696 0.98169 1.22022 1.00111 0.98223 0.81095 1.48553 1.66545 1.07489 1.11721 1.17602 0.76812 0.82976 0.85123 1.90797 1.55122 1.23591 1.73064 1.21731 1.05999 0.97630 0.93850 1.24050 0.92081 0.98699 0.94583 1.21490 1.01250 0.96974 0.94706 1.22487 1.00978 0.96768 0.96069 1.21597 1.02643 0.94940 0.94009 1.23201 1.01691 0.80006 0.98761 0.93521 0.92767 0.90447 0.90687 0.95257 0.83113 0.89600 0.93951 0.77471 0.91824 0.90513 0.89631 0.91634 0.90563 0.84501 0.90180 0.89537 0.90313 0.90764 0.89702 0.90149 0.87890 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 8.30 37.15 0.31 -1.04 16 2 C -0.07 -0.66 0.74 -152.82 -0.11 -0.78 16 3 C 0.07 0.78 4.58 -3.82 -0.02 0.77 16 4 N -0.66 -9.78 5.57 -115.06 -0.64 -10.43 16 5 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 6 C 0.44 10.13 7.82 -10.99 -0.09 10.04 16 7 O -0.58 -15.51 15.78 5.54 0.09 -15.42 16 8 N -0.56 -14.05 5.29 -10.96 -0.06 -14.10 16 9 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 10 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 13 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 C -0.13 -1.26 5.14 -25.36 -0.13 -1.39 16 18 C 0.11 1.11 6.95 -2.99 -0.02 1.09 16 19 N -0.61 -6.43 3.21 -171.38 -0.55 -6.98 16 20 C 0.58 7.16 7.86 -12.66 -0.10 7.06 16 21 O -0.55 -8.65 17.14 5.26 0.09 -8.56 16 22 C -0.19 -1.76 6.05 -102.73 -0.62 -2.38 16 23 C -0.07 -0.60 10.44 -36.01 -0.38 -0.98 16 24 C -0.11 -0.57 6.80 -26.85 -0.18 -0.75 16 25 C -0.13 -0.63 7.16 -25.07 -0.18 -0.81 16 26 C -0.10 -0.62 4.46 -26.85 -0.12 -0.74 16 27 C 0.09 0.71 4.71 -2.31 -0.01 0.70 16 28 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.00 7.80 -51.93 -0.41 0.59 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 33 H 0.35 5.39 7.31 -39.29 -0.29 5.10 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.39 9.32 7.90 -40.82 -0.32 8.99 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.08 0.72 7.66 -51.93 -0.40 0.32 16 39 H 0.09 0.90 7.86 -51.93 -0.41 0.49 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 42 H 0.14 1.13 8.04 -52.49 -0.42 0.71 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.52 7.19 -51.93 -0.37 0.14 16 48 H 0.08 0.48 6.49 -51.93 -0.34 0.15 16 49 H 0.10 0.73 3.72 -51.93 -0.19 0.53 16 50 H 0.07 0.55 8.03 -51.93 -0.42 0.13 16 LS Contribution 398.30 15.07 6.00 6.00 Total: -1.00 -33.13 398.30 -9.43 -42.56 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -8.14 Total: 10.93 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -1.92 Total: 3.67 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.52 Total: -55.07 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: 0.18 Total: -23.98 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.13 -9.43 -42.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484088344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.614 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds