Wall clock time and date at job start Tue Mar 31 2020 19:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 110.80128 * 2 1 4 4 N 1.46906 * 109.46955 * 298.15872 * 3 2 1 5 5 C 1.46899 * 110.99945 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.46940 * 180.02562 * 5 4 3 7 7 O 1.21301 * 119.99911 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99883 * 180.02562 * 6 5 4 9 9 C 1.37099 * 119.99902 * 179.97438 * 8 6 5 10 10 H 1.08001 * 119.99902 * 359.97438 * 9 8 6 11 11 C 1.38947 * 120.00416 * 179.97438 * 9 8 6 12 12 N 1.31412 * 119.99644 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00415 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47105 * 59.99948 * 13 11 9 15 15 H 1.48502 * 109.47197 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47038 * 299.99852 * 13 11 9 17 17 C 1.54615 * 110.74535 * 236.70232 * 2 1 3 18 18 C 1.53995 * 105.04736 * 263.51853 * 17 2 1 19 19 N 1.47480 * 107.08597 * 1.29897 * 18 17 2 20 20 C 1.34782 * 127.03668 * 154.51492 * 19 18 17 21 21 O 1.21616 * 119.99521 * 3.45204 * 20 19 18 22 22 C 1.47096 * 120.00122 * 183.44492 * 20 19 18 23 23 C 1.32613 * 124.61913 * 173.35725 * 22 20 19 24 24 C 1.51116 * 110.75721 * 180.02562 * 23 22 20 25 25 C 1.54574 * 104.84393 * 343.40410 * 24 23 22 26 26 C 1.51112 * 124.62263 * 353.40280 * 22 20 19 27 27 C 1.48119 * 105.93257 * 334.78203 * 19 18 17 28 28 H 1.09005 * 109.47201 * 181.83824 * 1 2 3 29 29 H 1.08999 * 109.47531 * 301.84506 * 1 2 3 30 30 H 1.09003 * 109.47250 * 61.84027 * 1 2 3 31 31 H 1.08993 * 109.47170 * 58.15988 * 3 2 1 32 32 H 1.09002 * 109.47441 * 178.16256 * 3 2 1 33 33 H 1.00900 * 110.99821 * 303.95381 * 4 3 2 34 34 H 1.09004 * 109.46788 * 299.99876 * 5 4 3 35 35 H 1.08993 * 109.47497 * 59.99918 * 5 4 3 36 36 H 0.97000 * 119.99997 * 359.97438 * 8 6 5 37 37 H 0.96994 * 120.00548 * 179.97438 * 12 11 9 38 38 H 1.08999 * 110.32973 * 144.62085 * 17 2 1 39 39 H 1.09003 * 110.32191 * 22.40659 * 17 2 1 40 40 H 1.08998 * 109.91475 * 241.94119 * 18 17 2 41 41 H 1.09005 * 109.91714 * 120.66514 * 18 17 2 42 42 H 1.07993 * 124.62700 * 0.05953 * 23 22 20 43 43 H 1.09005 * 110.36781 * 224.56018 * 24 23 22 44 44 H 1.09001 * 110.36434 * 102.24574 * 24 23 22 45 45 H 1.08998 * 110.98717 * 143.12409 * 25 24 23 46 46 H 1.08997 * 110.98415 * 266.92974 * 25 24 23 47 47 H 1.08995 * 110.36759 * 77.71894 * 26 22 20 48 48 H 1.09003 * 110.36163 * 315.40032 * 26 22 20 49 49 H 1.08996 * 110.66125 * 157.50090 * 27 19 18 50 50 H 1.08993 * 110.66209 * 280.62364 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0733 1.4303 0.0000 4 7 1.6361 2.1201 -1.2211 5 6 2.1408 3.4993 -1.2560 6 6 1.6726 4.1736 -2.5197 7 8 0.9864 3.5651 -3.3135 8 7 2.0172 5.4527 -2.7684 9 6 1.5917 6.0660 -3.9183 10 1 0.9807 5.5242 -4.6251 11 6 1.9465 7.3848 -4.1746 12 7 2.6895 8.0443 -3.3144 13 14 1.3673 8.2203 -5.7417 14 1 -0.1173 8.2352 -5.7751 15 1 1.8778 9.6143 -5.7772 16 1 1.8816 7.4753 -6.9189 17 6 2.0776 -0.7938 -1.2085 18 6 2.3762 -2.2015 -0.6601 19 7 1.9870 -2.2038 0.7624 20 6 1.6219 -3.2695 1.5024 21 8 1.6503 -4.3846 1.0179 22 6 1.1892 -3.0838 2.8960 23 6 0.6932 -4.0435 3.6651 24 6 0.3521 -3.5083 5.0365 25 6 1.1064 -2.1626 5.1352 26 6 1.2483 -1.7733 3.6459 27 6 2.0732 -0.7945 1.2099 28 1 -0.3634 -1.0272 0.0330 29 1 -0.3634 0.5422 0.8729 30 1 -0.3634 0.4850 -0.9060 31 1 1.6955 1.9624 0.8730 32 1 3.1625 1.4052 0.0330 33 1 1.9190 1.6109 -2.0450 34 1 1.7638 4.0460 -0.3916 35 1 3.2304 3.4882 -1.2319 36 1 2.5663 5.9392 -2.1338 37 1 2.9375 8.9647 -3.4933 38 1 2.9910 -0.3315 -1.5827 39 1 1.3279 -0.8462 -1.9981 40 1 3.4402 -2.4186 -0.7542 41 1 1.7935 -2.9438 -1.2057 42 1 0.5528 -5.0681 3.3541 43 1 0.6987 -4.1950 5.8088 44 1 -0.7225 -3.3481 5.1246 45 1 0.5166 -1.4234 5.6773 46 1 2.0838 -2.2962 5.5988 47 1 0.4258 -1.1254 3.3430 48 1 2.2047 -1.2799 3.4726 49 1 1.4487 -0.6309 2.0881 50 1 3.1075 -0.5188 1.4153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484088344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:42 Heat of formation + Delta-G solvation = -69.759683 kcal Electronic energy + Delta-G solvation = -28848.520935 eV Core-core repulsion = 24874.875288 eV Total energy + Delta-G solvation = -3973.645646 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.60448 -40.17524 -39.55711 -38.53791 -36.59868 -35.79884 -33.56733 -33.15925 -31.60781 -30.16972 -29.01134 -28.82823 -27.77636 -26.56310 -24.83746 -24.28719 -22.07091 -21.65025 -21.04341 -20.00083 -19.81133 -19.42917 -17.94252 -17.60814 -17.31583 -16.98127 -16.76329 -16.40711 -16.19111 -15.97556 -15.45358 -15.32944 -15.04726 -14.84028 -14.77641 -14.38976 -14.01363 -13.81785 -13.57786 -13.46692 -13.34750 -13.19892 -13.09826 -12.92798 -12.86206 -12.83910 -12.57017 -12.41584 -12.38278 -12.12606 -12.07364 -12.04917 -11.63731 -11.57405 -11.48045 -11.28879 -11.02970 -10.30393 -10.07090 -9.99027 -9.61751 -9.22107 -8.44830 -5.93153 0.34670 1.40771 1.42710 1.53245 1.90747 2.09220 2.19471 2.30581 2.93970 3.22859 3.33112 3.47249 3.60783 3.63969 3.70516 3.96097 4.05177 4.16238 4.21349 4.27698 4.29006 4.30557 4.37412 4.51602 4.55038 4.63761 4.68201 4.71517 4.75730 4.80114 4.84458 4.86257 4.90100 4.95043 4.99263 5.08382 5.11803 5.20868 5.23893 5.28708 5.37229 5.42594 5.43357 5.50738 5.53747 5.92854 6.15816 6.45027 6.49027 6.63025 7.04672 7.15166 7.59818 8.15465 8.72229 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026757 B = 0.001899 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.217332 B =14744.177902 C =15336.074548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C 0.077 3.923 4 N -0.680 5.680 5 C 0.066 3.934 6 C 0.437 3.563 7 O -0.624 6.624 8 N -0.574 5.574 9 C -0.333 4.333 10 H 0.078 0.922 11 C -0.013 4.013 12 N -0.920 5.920 13 Si 0.991 3.009 14 H -0.273 1.273 15 H -0.271 1.271 16 H -0.273 1.273 17 C -0.124 4.124 18 C 0.107 3.893 19 N -0.610 5.610 20 C 0.574 3.426 21 O -0.597 6.597 22 C -0.211 4.211 23 C -0.071 4.071 24 C -0.104 4.104 25 C -0.121 4.121 26 C -0.093 4.093 27 C 0.091 3.909 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.342 0.658 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.125 0.875 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.121 0.879 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.836 -17.482 20.575 27.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.052 4.052 4 N -0.312 5.312 5 C -0.066 4.066 6 C 0.224 3.776 7 O -0.511 6.511 8 N -0.212 5.212 9 C -0.463 4.463 10 H 0.096 0.904 11 C -0.213 4.213 12 N -0.560 5.560 13 Si 0.815 3.185 14 H -0.198 1.198 15 H -0.195 1.195 16 H -0.198 1.198 17 C -0.162 4.162 18 C -0.016 4.016 19 N -0.341 5.341 20 C 0.367 3.633 21 O -0.480 6.480 22 C -0.214 4.214 23 C -0.091 4.091 24 C -0.141 4.141 25 C -0.158 4.158 26 C -0.129 4.129 27 C -0.031 4.031 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.161 0.839 34 H 0.125 0.875 35 H 0.085 0.915 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.143 0.857 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.097 0.903 47 H 0.110 0.890 48 H 0.106 0.894 49 H 0.139 0.861 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.143 -18.137 20.105 27.077 hybrid contribution 0.934 0.337 -1.393 1.711 sum 0.791 -17.800 18.711 25.838 Atomic orbital electron populations 1.21583 0.93466 1.00147 1.02615 1.21544 0.96472 0.93856 0.94655 1.21977 0.97847 0.92276 0.93053 1.60035 1.64386 1.01233 1.05554 1.21525 0.98604 0.91028 0.95464 1.20991 0.84171 0.82542 0.89856 1.90498 1.43566 1.65648 1.51373 1.41933 1.47224 1.11256 1.20750 1.19609 1.31379 0.95977 0.99351 0.90448 1.26005 0.96621 0.96606 1.02049 1.69656 1.36997 1.12163 1.37234 0.85017 0.78526 0.77307 0.77655 1.19823 1.19509 1.19810 1.22605 1.02146 0.93440 0.98034 1.22019 1.00219 0.98085 0.81272 1.48635 1.65597 1.08241 1.11608 1.18193 0.76245 0.82539 0.86359 1.90758 1.57455 1.25479 1.74341 1.21823 1.07321 0.99717 0.92567 1.24340 0.90605 0.98142 0.96012 1.21555 1.02058 0.97468 0.92989 1.22510 1.01502 0.96709 0.95073 1.21625 1.03274 0.93421 0.94585 1.23346 1.03173 0.78102 0.98462 0.94256 0.91478 0.93063 0.89109 0.93321 0.83881 0.87530 0.91487 0.76929 0.91334 0.89677 0.91025 0.90897 0.92359 0.85672 0.88798 0.88353 0.88605 0.90290 0.89047 0.89395 0.86120 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.30 71.98 0.60 -1.87 16 2 C -0.06 -1.11 0.74 -51.09 -0.04 -1.14 16 3 C 0.08 1.40 4.58 86.30 0.40 1.79 16 4 N -0.68 -18.84 5.57 -517.93 -2.89 -21.72 16 5 C 0.07 2.06 6.17 85.56 0.53 2.58 16 6 C 0.44 20.05 7.82 87.66 0.69 20.73 16 7 O -0.62 -33.86 15.78 -3.09 -0.05 -33.91 16 8 N -0.57 -28.77 5.29 -306.98 -1.62 -30.39 16 9 C -0.33 -18.73 9.68 84.04 0.81 -17.92 16 10 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 11 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 12 N -0.92 -48.94 13.05 21.66 0.28 -48.65 16 13 Si 0.99 42.62 29.55 68.60 2.03 44.64 16 14 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 15 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 C -0.12 -2.36 5.14 31.48 0.16 -2.20 16 18 C 0.11 2.21 6.95 86.53 0.60 2.81 16 19 N -0.61 -12.45 3.21 -814.36 -2.61 -15.06 16 20 C 0.57 14.19 7.86 86.57 0.68 14.87 16 21 O -0.60 -19.85 17.14 -4.08 -0.07 -19.92 16 22 C -0.21 -3.72 6.05 -18.57 -0.11 -3.83 16 23 C -0.07 -1.09 10.44 24.66 0.26 -0.83 16 24 C -0.10 -0.84 6.80 30.52 0.21 -0.64 16 25 C -0.12 -0.81 7.16 31.67 0.23 -0.59 16 26 C -0.09 -0.94 4.46 30.52 0.14 -0.81 16 27 C 0.09 1.27 4.71 86.61 0.41 1.68 16 28 H 0.04 0.84 8.08 -2.38 -0.02 0.82 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.05 1.32 7.80 -2.39 -0.02 1.30 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 0.74 8.12 -2.39 -0.02 0.72 16 33 H 0.34 10.30 7.31 -89.69 -0.66 9.65 16 34 H 0.11 2.93 8.14 -2.38 -0.02 2.91 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.40 18.75 7.90 -92.71 -0.73 18.02 16 37 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 38 H 0.08 1.49 7.66 -2.39 -0.02 1.47 16 39 H 0.07 1.56 7.86 -2.39 -0.02 1.55 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 1.40 8.09 -2.38 -0.02 1.38 16 42 H 0.13 2.14 8.04 -2.91 -0.02 2.11 16 43 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 44 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.09 0.81 7.19 -2.39 -0.02 0.79 16 48 H 0.09 0.76 6.49 -2.39 -0.02 0.74 16 49 H 0.12 1.30 3.72 -2.39 -0.01 1.30 16 50 H 0.09 1.02 8.03 -2.39 -0.02 1.00 16 Total: -1.00 -74.22 398.30 0.65 -73.56 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: -0.43 Total: 37.02 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 6.01 Total: 14.43 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -6.84 Total: -115.82 kcal Atomic # 8 Polarization: -53.71 SS G_CDS: -0.12 Total: -53.83 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -74.22 0.65 -73.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484088344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.803 kcal (2) G-P(sol) polarization free energy of solvation -74.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds