Wall clock time and date at job start Tue Mar 31 2020 18:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36763 * 125.80405 * 2 1 4 4 C 1.47269 * 126.94245 * 0.02562 * 3 2 1 5 5 O 1.21623 * 119.99615 * 0.02562 * 4 3 2 6 6 N 1.34769 * 120.00394 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00237 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.46998 * 180.02562 * 7 6 4 9 9 O 1.42903 * 110.63860 * 66.68903 * 8 7 6 10 10 C 1.55163 * 110.71776 * 190.02094 * 8 7 6 11 11 C 1.54907 * 101.57736 * 153.86275 * 10 8 7 12 12 N 1.47419 * 104.83507 * 322.99305 * 11 10 8 13 13 C 1.36940 * 125.64886 * 204.16172 * 12 11 10 14 14 H 1.07996 * 120.00387 * 179.97438 * 13 12 11 15 15 C 1.38812 * 119.99833 * 359.96123 * 13 12 11 16 16 N 1.31620 * 120.00267 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99903 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47505 * 59.99981 * 17 15 13 19 19 H 1.48506 * 109.47224 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46987 * 299.99715 * 17 15 13 21 21 C 1.47017 * 108.70543 * 24.12815 * 12 11 10 22 22 C 1.46683 * 106.11965 * 180.28594 * 3 2 1 23 23 C 1.34487 * 106.33194 * 359.56823 * 22 3 2 24 24 N 1.34666 * 125.80053 * 180.02562 * 2 1 3 25 25 C 1.46497 * 124.85054 * 359.97438 * 24 2 1 26 26 C 1.52997 * 109.46755 * 120.00278 * 25 24 2 27 27 C 1.52995 * 109.47164 * 240.00417 * 25 24 2 28 28 H 1.08996 * 109.47899 * 89.97543 * 1 2 3 29 29 H 1.09007 * 109.47156 * 209.97524 * 1 2 3 30 30 H 1.09000 * 109.46942 * 329.97291 * 1 2 3 31 31 H 0.97010 * 119.99854 * 0.02562 * 6 4 3 32 32 H 1.08993 * 109.47452 * 60.00368 * 7 6 4 33 33 H 1.09000 * 109.47175 * 300.00158 * 7 6 4 34 34 H 0.96695 * 114.00286 * 300.69612 * 9 8 7 35 35 H 1.08999 * 111.00623 * 271.94003 * 10 8 7 36 36 H 1.09000 * 111.00045 * 35.79396 * 10 8 7 37 37 H 1.09001 * 110.36318 * 204.15216 * 11 10 8 38 38 H 1.09000 * 110.36707 * 81.83205 * 11 10 8 39 39 H 0.97001 * 120.00327 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.88349 * 239.52192 * 21 12 11 41 41 H 1.09008 * 109.88383 * 118.35396 * 21 12 11 42 42 H 1.08007 * 126.83943 * 179.73656 * 22 3 2 43 43 H 1.07999 * 125.57719 * 180.14776 * 23 22 3 44 44 H 1.09000 * 109.47327 * 0.02562 * 25 24 2 45 45 H 1.09006 * 109.47193 * 60.00441 * 26 25 24 46 46 H 1.08998 * 109.47413 * 180.02562 * 26 25 24 47 47 H 1.09005 * 109.47718 * 300.00248 * 26 25 24 48 48 H 1.08992 * 109.47412 * 60.00621 * 27 25 24 49 49 H 1.09006 * 109.46577 * 180.02562 * 27 25 24 50 50 H 1.08998 * 109.47474 * 299.99590 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8702 2.5156 0.0005 5 8 0.6839 2.7839 0.0015 6 7 2.7849 3.5054 0.0010 7 6 2.3503 4.9044 0.0021 8 6 3.5767 5.8194 0.0017 9 8 4.2960 5.6971 -1.2270 10 6 3.1622 7.2929 0.2554 11 6 4.4543 7.8762 0.8799 12 7 4.9926 6.7892 1.7178 13 6 5.8209 6.9485 2.7965 14 1 6.1617 6.0847 3.3479 15 6 6.2228 8.2203 3.1811 16 7 5.8081 9.2731 2.5087 17 14 7.3534 8.4376 4.6522 18 1 8.6286 7.7172 4.4072 19 1 7.6314 9.8824 4.8538 20 1 6.6984 7.8861 5.8655 21 6 4.4921 5.5059 1.2039 22 6 3.6881 0.6151 -0.0070 23 6 3.6095 -0.7275 -0.0009 24 7 2.2947 -1.0922 -0.0005 25 6 1.8093 -2.4744 -0.0006 26 6 2.3205 -3.1943 -1.2501 27 6 2.3212 -3.1948 1.2484 28 1 -0.3635 0.0004 -1.0276 29 1 -0.3634 -0.8903 0.5135 30 1 -0.3633 0.8897 0.5143 31 1 3.7311 3.2914 0.0006 32 1 1.7522 5.0984 0.8923 33 1 1.7516 5.0996 -0.8876 34 1 4.6106 4.8015 -1.4111 35 1 2.9184 7.7968 -0.6799 36 1 2.3295 7.3494 0.9565 37 1 4.2200 8.7469 1.4924 38 1 5.1669 8.1415 0.0989 39 1 6.0893 10.1618 2.7772 40 1 3.9232 4.9927 1.9792 41 1 5.3276 4.8844 0.8815 42 1 4.5890 1.2109 -0.0129 43 1 4.4497 -1.4061 -0.0013 44 1 0.7193 -2.4768 -0.0006 45 1 3.4105 -3.1920 -1.2504 46 1 1.9590 -4.2226 -1.2505 47 1 1.9558 -2.6811 -2.1400 48 1 1.9570 -2.6820 2.1385 49 1 1.9604 -4.2234 1.2480 50 1 3.4112 -3.1926 1.2481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484238467.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:06 Heat of formation + Delta-G solvation = -15.595738 kcal Electronic energy + Delta-G solvation = -29383.743594 eV Core-core repulsion = 25412.446672 eV Total energy + Delta-G solvation = -3971.296921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.68218 -39.46228 -38.16492 -35.61072 -35.03659 -34.01617 -32.04731 -31.76332 -30.33450 -29.41086 -28.07251 -27.87004 -26.52082 -25.56492 -23.78823 -22.69985 -22.16051 -20.40884 -19.80075 -19.56004 -18.88624 -17.61119 -16.87704 -16.81355 -15.79446 -15.59890 -15.51406 -14.94670 -14.83922 -14.67989 -14.04312 -13.97173 -13.84242 -13.63329 -13.48403 -13.16647 -13.07567 -12.96362 -12.88047 -12.79590 -12.54331 -12.48995 -12.10499 -12.01286 -11.75230 -11.66178 -11.56844 -11.51129 -10.99997 -10.83182 -10.69059 -10.27677 -10.14116 -9.99645 -9.65964 -9.61258 -9.32224 -8.94723 -8.70441 -8.61099 -8.25112 -6.81327 -5.62329 -3.04428 1.70692 2.30482 2.49776 3.42436 3.46152 3.47938 3.50114 3.66612 4.05055 4.36134 4.42144 4.49448 4.54312 4.57613 4.73110 4.93384 4.94122 5.03246 5.04496 5.13301 5.14918 5.28182 5.30221 5.40465 5.45136 5.48175 5.53219 5.55015 5.57078 5.71502 5.77860 5.85901 5.99103 6.04649 6.15620 6.30897 6.49068 6.54823 6.57297 6.65124 6.68201 6.74111 6.93159 7.08059 7.60328 7.65345 7.73228 7.88629 8.03376 8.38572 8.48781 9.24279 9.84778 10.49722 11.41360 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.002447 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.587701 B =11438.252304 C =12392.440393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.105 3.895 3 C -0.235 4.235 4 C 0.592 3.408 5 O -0.555 6.555 6 N -0.723 5.723 7 C 0.107 3.893 8 C 0.106 3.894 9 O -0.544 6.544 10 C -0.128 4.128 11 C 0.156 3.844 12 N -0.600 5.600 13 C -0.224 4.224 14 H 0.076 0.924 15 C -0.011 4.011 16 N -0.921 5.921 17 Si 0.915 3.085 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.117 3.883 22 C -0.166 4.166 23 C -0.015 4.015 24 N -0.437 5.437 25 C 0.120 3.880 26 C -0.162 4.162 27 C -0.163 4.163 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.398 0.602 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.365 0.635 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.018 0.982 39 H 0.253 0.747 40 H 0.031 0.969 41 H 0.022 0.978 42 H 0.145 0.855 43 H 0.163 0.837 44 H 0.100 0.900 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.075 0.925 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.595 -25.686 -7.538 28.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.012 4.012 3 C -0.245 4.245 4 C 0.381 3.619 5 O -0.435 6.435 6 N -0.374 5.374 7 C -0.017 4.017 8 C 0.064 3.936 9 O -0.349 6.349 10 C -0.167 4.167 11 C 0.031 3.969 12 N -0.326 5.326 13 C -0.352 4.352 14 H 0.094 0.906 15 C -0.206 4.206 16 N -0.569 5.569 17 Si 0.746 3.254 18 H -0.212 1.212 19 H -0.215 1.215 20 H -0.212 1.212 21 C -0.010 4.010 22 C -0.190 4.190 23 C -0.141 4.141 24 N -0.114 5.114 25 C 0.018 3.982 26 C -0.220 4.220 27 C -0.221 4.221 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.233 0.767 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.211 0.789 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.125 0.875 38 H 0.036 0.964 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.040 0.960 42 H 0.163 0.837 43 H 0.180 0.820 44 H 0.118 0.882 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.543 -24.991 -7.444 27.767 hybrid contribution 1.474 -0.730 0.767 1.815 sum -8.070 -25.721 -6.677 27.772 Atomic orbital electron populations 1.20564 0.87334 1.03973 1.03236 1.20278 0.93648 0.85177 1.02087 1.20108 0.93238 0.91884 1.19230 1.17324 0.85229 0.84018 0.75333 1.90713 1.16687 1.84518 1.51632 1.45768 1.09779 1.06071 1.75802 1.22034 0.97309 0.79451 1.02912 1.22549 0.89702 0.96873 0.84454 1.86606 1.74976 1.33555 1.39735 1.23047 1.01253 0.91714 1.00678 1.21937 0.88745 0.93158 0.93020 1.44406 1.56046 0.99787 1.32348 1.19015 1.20373 0.92694 1.03148 0.90606 1.24794 1.00870 0.95405 0.99553 1.69786 1.48438 0.97655 1.41061 0.86142 0.80380 0.76773 0.82115 1.21244 1.21546 1.21170 1.21915 0.94747 0.90899 0.93457 1.22026 0.95791 0.93568 1.07595 1.21521 0.85616 0.95973 1.10949 1.43831 1.05874 1.05438 1.56270 1.21510 1.00453 0.79285 0.96966 1.22167 1.02401 1.00706 0.96718 1.22176 1.02445 1.00712 0.96775 0.90642 0.92180 0.87961 0.76733 0.90475 0.90884 0.78894 0.91118 0.90609 0.87473 0.96421 0.93632 0.95074 0.95980 0.83718 0.81977 0.88152 0.91561 0.90618 0.91666 0.91605 0.90614 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 9.34 36.00 0.34 -0.58 16 2 C 0.10 1.19 6.89 -81.89 -0.56 0.62 16 3 C -0.23 -3.08 6.29 -103.35 -0.65 -3.73 16 4 C 0.59 9.10 7.81 -12.59 -0.10 9.01 16 5 O -0.56 -9.97 14.81 5.26 0.08 -9.89 16 6 N -0.72 -10.31 5.13 -61.43 -0.32 -10.63 16 7 C 0.11 1.70 4.80 -4.04 -0.02 1.68 16 8 C 0.11 1.90 0.93 -88.78 -0.08 1.82 16 9 O -0.54 -9.50 13.10 -35.23 -0.46 -9.96 16 10 C -0.13 -2.55 6.26 -24.58 -0.15 -2.70 16 11 C 0.16 3.93 5.88 -2.53 -0.01 3.91 16 12 N -0.60 -15.65 3.39 -170.08 -0.58 -16.23 16 13 C -0.22 -6.34 10.27 -15.06 -0.15 -6.49 16 14 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 15 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 16 N -0.92 -27.23 10.09 55.49 0.56 -26.67 16 17 Si 0.92 22.30 29.55 -169.99 -5.02 17.28 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.12 2.43 5.76 -3.07 -0.02 2.41 16 22 C -0.17 -1.79 10.56 -37.50 -0.40 -2.19 16 23 C -0.01 -0.13 10.17 -16.82 -0.17 -0.30 16 24 N -0.44 -3.87 2.57 -105.47 -0.27 -4.14 16 25 C 0.12 0.68 3.45 -67.94 -0.23 0.44 16 26 C -0.16 -0.72 9.22 37.16 0.34 -0.37 16 27 C -0.16 -0.77 9.23 37.16 0.34 -0.42 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.43 6.96 -51.93 -0.36 0.07 16 30 H 0.10 1.24 6.47 -51.93 -0.34 0.90 16 31 H 0.40 4.98 6.59 -40.82 -0.27 4.71 16 32 H 0.08 1.30 8.03 -51.93 -0.42 0.89 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.36 4.87 8.44 45.56 0.38 5.26 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.08 1.43 7.96 -51.93 -0.41 1.02 16 37 H 0.11 2.98 5.87 -51.93 -0.31 2.68 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.03 0.65 7.82 -51.93 -0.41 0.25 16 41 H 0.02 0.45 8.07 -51.92 -0.42 0.03 16 42 H 0.15 1.34 7.70 -52.48 -0.40 0.94 16 43 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.10 0.49 6.47 -51.93 -0.34 0.16 16 45 H 0.07 0.29 7.88 -51.93 -0.41 -0.12 16 46 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 50 H 0.07 0.31 7.88 -51.93 -0.41 -0.09 16 LS Contribution 397.79 15.07 5.99 5.99 Total: -1.00 -34.73 397.79 -9.10 -43.83 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.45 Total: 7.71 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -1.63 Total: 2.70 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.60 Total: -57.66 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.38 Total: -19.85 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.73 -9.10 -43.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484238467.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.232 kcal (2) G-P(sol) polarization free energy of solvation -34.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds